Guide to the Human Genome
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Name: IGSF11 Sequence: fasta or formatted (431aa) NCBI GI: 62865876
Description:

immunoglobulin superfamily, member 11 isoform b

Referenced in:

Additional Genes in Development
Testes and Sperm

Other entries for this name:
alt prot [430aa] immunoglobulin superfamily, member 11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         30           2
 C cysteine            1.9          8           1
 D aspartate           2.8         12           2
 E glutamate           3.9         17           6
 F phenylalanine       2.8         12           2
 G glycine             7.7         33           2
 H histidine           2.8         12           1
 I isoleucine          7.2         31           3
 K lysine              2.1          9           1
 L leucine             8.8         38           4
 M methionine          1.4          6           1
 N asparagine          6.5         28           2
 P proline             7.2         31           2
 Q glutamine           5.1         22           1
 R arginine            4.2         18           1
 S serine             11.4         49           3
 T threonine           7.4         32           2
 V valine              7.0         30           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 11 isoform b [Hom... 
IGSF11                0.962   immunoglobulin superfamily, member 11 isoform a [Hom...
CXADR                 0.183   coxsackie virus and adenovirus receptor precursor [Ho...
VSIG2                 0.143   V-set and immunoglobulin domain containing 2 
VSIG1                 0.131   V-set and immunoglobulin domain containing 1 
ESAM                  0.119   endothelial cell adhesion molecule 
ASAM                  0.118   adipocyte-specific adhesion molecule 
GPA33                 0.117   transmembrane glycoprotein A33 precursor 
VSIG8                 0.074   V-set and immunoglobulin domain containing 8 
F11R                  0.057   F11 receptor precursor 
JAM2                  0.054   junctional adhesion molecule 2 precursor 
JAM3                  0.046   junctional adhesion molecule 3 precursor 
CNTN5                 0.045   contactin 5 isoform long 
CNTN5                 0.045   contactin 5 isoform short 
SIGLEC15              0.044   sialic acid binding Ig-like lectin 15 
HMCN1                 0.043   hemicentin 1 
IGSF10                0.043   immunoglobulin superfamily, member 10 
ROBO1                 0.042   roundabout 1 isoform b 
CD276                 0.042   CD276 antigen isoform a 
ROBO1                 0.042   roundabout 1 isoform a 
ROBO1                 0.042   roundabout 1 isoform d 
ROBO1                 0.042   roundabout 1 isoform c 
CD276                 0.042   CD276 antigen isoform b 
LOC642132             0.042   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.042   PREDICTED: similar to roundabout 1 isoform 2 
HMCN2                 0.040   PREDICTED: hemicentin 2 
HMCN2                 0.040   PREDICTED: hemicentin 2 
HMCN2                 0.039   PREDICTED: hemicentin 2 
ROBO3                 0.039   roundabout, axon guidance receptor, homolog 3 
HSPG2                 0.038   heparan sulfate proteoglycan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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