Guide to the Human Genome
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Name: VSIG2 Sequence: fasta or formatted (327aa) NCBI GI: 21361429
Description:

V-set and immunoglobulin domain containing 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         18           2
 C cysteine            3.1         10           1
 D aspartate           2.4          8           1
 E glutamate           4.6         15           1
 F phenylalanine       3.1         10           1
 G glycine             9.5         31           2
 H histidine           1.2          4           1
 I isoleucine          2.1          7           1
 K lysine              4.3         14           2
 L leucine            12.5         41           3
 M methionine          1.5          5           1
 N asparagine          3.1         10           2
 P proline             8.3         27           2
 Q glutamine           3.1         10           1
 R arginine            3.1         10           1
 S serine             11.9         39           3
 T threonine           9.5         31           3
 V valine              8.3         27           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set and immunoglobulin domain containing 2 
VSIG1                 0.204   V-set and immunoglobulin domain containing 1 
IGSF11                0.190   immunoglobulin superfamily, member 11 isoform b [Hom...
IGSF11                0.188   immunoglobulin superfamily, member 11 isoform a [Hom...
CXADR                 0.149   coxsackie virus and adenovirus receptor precursor [Ho...
GPA33                 0.146   transmembrane glycoprotein A33 precursor 
ESAM                  0.142   endothelial cell adhesion molecule 
ASAM                  0.136   adipocyte-specific adhesion molecule 
JAM3                  0.100   junctional adhesion molecule 3 precursor 
F11R                  0.089   F11 receptor precursor 
VSIG8                 0.079   V-set and immunoglobulin domain containing 8 
ROBO2                 0.071   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.071   roundabout, axon guidance receptor, homolog 2 isofor...
HEPACAM               0.070   hepatocyte cell adhesion molecule 
JAM2                  0.063   junctional adhesion molecule 2 precursor 
CNTN4                 0.062   contactin 4 isoform c precursor 
CNTN4                 0.062   contactin 4 isoform a precursor 
CEACAM5               0.060   carcinoembryonic antigen-related cell adhesion molec...
CD276                 0.059   CD276 antigen isoform b 
HMCN1                 0.057   hemicentin 1 
LOC100292387          0.055   PREDICTED: similar to hemicentin 2 
HMCN2                 0.055   PREDICTED: hemicentin 2 
BTN3A3                0.055   butyrophilin, subfamily 3, member A3 isoform a 
CD276                 0.055   CD276 antigen isoform a 
LOC100289200          0.055   PREDICTED: hypothetical protein XP_002342997 
CEACAM6               0.054   carcinoembryonic antigen-related cell adhesion molec...
FCRL2                 0.051   Fc receptor-like 2 precursor 
PXDN                  0.051   peroxidasin 
IGDCC4                0.051   immunoglobulin superfamily, DCC subclass, member 4 [...
IGSF10                0.051   immunoglobulin superfamily, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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