Guide to the Human Genome
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Name: JAM2 Sequence: fasta or formatted (298aa) NCBI GI: 10864029
Description:

junctional adhesion molecule 2 precursor

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         20           2
 C cysteine            2.7          8           1
 D aspartate           3.7         11           2
 E glutamate           6.0         18           2
 F phenylalanine       3.4         10           1
 G glycine             6.0         18           1
 H histidine           1.0          3           1
 I isoleucine          3.7         11           2
 K lysine              7.0         21           2
 L leucine             8.4         25           6
 M methionine          1.7          5           1
 N asparagine          4.4         13           1
 P proline             3.4         10           1
 Q glutamine           4.7         14           2
 R arginine            6.4         19           2
 S serine             10.1         30           3
 T threonine           6.7         20           2
 V valine              9.1         27           4
 W tryptophan          0.7          2           1
 Y tyrosine            4.4         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   junctional adhesion molecule 2 precursor 
JAM3                  0.283   junctional adhesion molecule 3 precursor 
F11R                  0.248   F11 receptor precursor 
GPA33                 0.106   transmembrane glycoprotein A33 precursor 
ESAM                  0.088   endothelial cell adhesion molecule 
VSIG1                 0.081   V-set and immunoglobulin domain containing 1 
CXADR                 0.079   coxsackie virus and adenovirus receptor precursor [Ho...
IGSF11                0.079   immunoglobulin superfamily, member 11 isoform b [Hom...
IGSF11                0.079   immunoglobulin superfamily, member 11 isoform a [Hom...
HMCN1                 0.074   hemicentin 1 
VSIG2                 0.070   V-set and immunoglobulin domain containing 2 
TTN                   0.065   titin isoform N2-A 
NCAM2                 0.062   neural cell adhesion molecule 2 precursor 
HMCN2                 0.060   PREDICTED: hemicentin 2 
HMCN2                 0.060   PREDICTED: hemicentin 2 
HMCN2                 0.060   PREDICTED: hemicentin 2 
FSTL4                 0.060   follistatin-like 4 
VSIG8                 0.060   V-set and immunoglobulin domain containing 8 
NRG2                  0.058   neuregulin 2 isoform 2 
NRG2                  0.058   neuregulin 2 isoform 4 
NRG2                  0.058   neuregulin 2 isoform 3 
NRG2                  0.058   neuregulin 2 isoform 1 
PXDN                  0.058   peroxidasin 
CEACAM6               0.055   carcinoembryonic antigen-related cell adhesion molec...
LOC100292387          0.053   PREDICTED: similar to hemicentin 2 
LOC100289200          0.053   PREDICTED: hypothetical protein XP_002342997 
ASAM                  0.053   adipocyte-specific adhesion molecule 
ROBO2                 0.053   roundabout, axon guidance receptor, homolog 2 isofo...
FSTL5                 0.053   follistatin-like 5 isoform c 
FSTL5                 0.053   follistatin-like 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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