Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C1QTNF6 Sequence: fasta or formatted (278aa) NCBI GI: 32967300
Description:

C1q and tumor necrosis factor related protein 6

Referenced in:

Complement

Other entries for this name:
alt mRNA [278aa] C1q and tumor necrosis factor related protein 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         21           2
 C cysteine            2.2          6           2
 D aspartate           5.8         16           2
 E glutamate           5.8         16           1
 F phenylalanine       5.4         15           2
 G glycine             9.7         27           1
 H histidine           2.9          8           1
 I isoleucine          4.3         12           1
 K lysine              3.6         10           1
 L leucine             8.3         23           3
 M methionine          4.0         11           1
 N asparagine          2.5          7           1
 P proline             6.5         18           1
 Q glutamine           4.3         12           1
 R arginine            6.1         17           1
 S serine              7.2         20           3
 T threonine           4.0         11           1
 V valine              5.4         15           1
 W tryptophan          1.4          4           1
 Y tyrosine            3.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 6 [Hom... 
C1QTNF6               1.000   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF8               0.398   C1q and tumor necrosis factor related protein 8 [Ho...
C1QTNF1               0.378   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.378   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.367   C1q and tumor necrosis factor related protein 1 [Hom...
C1QTNF3               0.136   C1q and tumor necrosis factor related protein 3 isof...
ADIPOQ                0.134   adiponectin precursor 
C1QTNF3               0.132   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF2               0.114   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF7               0.112   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.112   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.112   C1q and tumor necrosis factor related protein 7 iso...
C1QL3                 0.110   complement component 1, q subcomponent-like 3 
C1QA                  0.108   complement component 1, q subcomponent, A chain precu...
C1QL4                 0.107   complement component 1, q subcomponent-like 4 
C1QL2                 0.107   complement component 1, q subcomponent-like 2 [Homo...
C1QL1                 0.103   complement component 1, q subcomponent-like 1 
C1QTNF9               0.098   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF9B              0.096   C1q and tumor necrosis factor related protein 9B [Ho...
COL10A1               0.090   type X collagen alpha 1 precursor 
C1QTNF4               0.090   C1q and tumor necrosis factor related protein 4 [Ho...
C1QC                  0.090   complement component 1, q subcomponent, C chain prec...
C1QC                  0.090   complement component 1, q subcomponent, C chain pre...
C1QTNF5               0.089   C1q and tumor necrosis factor related protein 5 prec...
OTOL1                 0.083   hypothetical protein LOC131149 
COL8A2                0.078   collagen, type VIII, alpha 2 
EMILIN1               0.078   elastin microfibril interfacer 1 
C1QB                  0.076   complement component 1, q subcomponent, B chain prec...
COL16A1               0.065   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press