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Search of human proteins with 5902102
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 237 1e-63
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 225 7e-60
gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo ... 61 2e-10
gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens] 53 5e-08
gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens] 50 3e-07
gi|110681708 zinc finger protein 579 [Homo sapiens] 49 1e-06
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 47 3e-06
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 47 3e-06
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 45 1e-05
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 45 1e-05
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 45 1e-05
gi|61102725 la related protein isoform 2 [Homo sapiens] 44 3e-05
gi|39725634 la related protein isoform 1 [Homo sapiens] 44 3e-05
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 42 1e-04
gi|15055539 ribosomal protein S2 [Homo sapiens] 40 3e-04
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ... 39 7e-04
gi|47174861 peter pan homolog [Homo sapiens] 39 0.001
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 38 0.002
gi|239755681 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239750150 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239744460 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|28875797 small protein rich in arginine and glycine [Homo sap... 37 0.005
gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens] 36 0.006
gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens] 36 0.006
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 35 0.013
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 34 0.022
gi|169203160 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|169203656 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|169202387 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 33 0.038
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 237 bits (605), Expect = 1e-63
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 225 bits (573), Expect = 7e-60
Identities = 114/119 (95%), Positives = 115/119 (96%)
Query: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
MKLVRFLMKLSHETVTI LKN TQVHGT+TGVDVSMNTHLKAVKMT KNREPVQLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSI 60
Query: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
RGNNIRYFIL DSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
Sbjct: 61 RGNNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo
sapiens]
Length = 126
Score = 60.8 bits (146), Expect = 2e-10
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
+K+ HE VT E G G + + +MN + + +T ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRG-------RGRGRGRGRGRG 113
IR+ ILPD L +L +K+K + + AGRG+ RGRGRG GRG
Sbjct: 67 KIRFLILPDMLKNAPML----KSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRG 119
>gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
Length = 139
Score = 53.1 bits (126), Expect = 5e-08
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 66 RYFILPDSLPLDTLLVDVEPK---------VKSKKREAVAGRGRG--RGRGRGRGRGRGR 114
+Y +PD + +D + +V K K +K + G GRG GRGRG G GR
Sbjct: 67 KYLRIPDEI-IDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGR 125
Query: 115 GGPRR 119
G P +
Sbjct: 126 GQPEK 130
>gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]
Length = 123
Score = 50.4 bits (119), Expect = 3e-07
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 62
L+ L L T++L++ + HG I VD MN L V T + V+L+ L + G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
N+RY +PD + + T ++ + ++ + R G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRN-FGGKGQGR 114
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 48.5 bits (114), Expect = 1e-06
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 81 VDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGG 116
+D +P ++ GRGRGRGRGRGRGRGRGRGG
Sbjct: 1 MDPQPPPPAQGSPPHRGRGRGRGRGRGRGRGRGRGG 36
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/23 (82%), Positives = 19/23 (82%)
Query: 97 GRGRGRGRGRGRGRGRGRGGPRR 119
GRGRGRGRGRGRGRGRG G R
Sbjct: 19 GRGRGRGRGRGRGRGRGGAGAPR 41
Score = 38.9 bits (89), Expect = 0.001
Identities = 17/19 (89%), Positives = 17/19 (89%)
Query: 100 RGRGRGRGRGRGRGRGGPR 118
RGRGRGRGRGRGRGRG R
Sbjct: 16 RGRGRGRGRGRGRGRGRGR 34
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/24 (87%), Positives = 21/24 (87%)
Query: 95 VAGRGRGRGRGRGRGRGRGRGGPR 118
V GRGRGRGRGRGRGRGRGRG R
Sbjct: 73 VCGRGRGRGRGRGRGRGRGRGRGR 96
Score = 47.0 bits (110), Expect = 3e-06
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 97 GRGRGRGRGRGRGRGRGRGGP 117
GRGRGRGRGRGRGRGRGRG P
Sbjct: 77 GRGRGRGRGRGRGRGRGRGRP 97
Score = 39.3 bits (90), Expect = 7e-04
Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 11/43 (25%)
Query: 87 VKSKKREAVAGRGRGRGR-----------GRGRGRGRGRGGPR 118
V +RE G GRGRGR GRGRGRGRGRG R
Sbjct: 46 VSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGR 88
Score = 39.3 bits (90), Expect = 7e-04
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 97 GRGRGRGRGRGRGRGRGRGG 116
GRGRGRGRGRGRGRGR G
Sbjct: 81 GRGRGRGRGRGRGRGRPPSG 100
Score = 32.3 bits (72), Expect = 0.085
Identities = 16/22 (72%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 97 GRGRGRGRGRGR--GRGRGRGG 116
GRGRGRGRGRGR G G GG
Sbjct: 85 GRGRGRGRGRGRPPSGGSGLGG 106
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 97 GRGRGRGRGRGRGRGRGRGG 116
GRGRGRGR G G G G
Sbjct: 89 GRGRGRGRPPSGGSGLGGDG 108
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/24 (87%), Positives = 21/24 (87%)
Query: 95 VAGRGRGRGRGRGRGRGRGRGGPR 118
V GRGRGRGRGRGRGRGRGRG R
Sbjct: 73 VCGRGRGRGRGRGRGRGRGRGRGR 96
Score = 47.0 bits (110), Expect = 3e-06
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 97 GRGRGRGRGRGRGRGRGRGGP 117
GRGRGRGRGRGRGRGRGRG P
Sbjct: 77 GRGRGRGRGRGRGRGRGRGRP 97
Score = 39.3 bits (90), Expect = 7e-04
Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 11/43 (25%)
Query: 87 VKSKKREAVAGRGRGRGR-----------GRGRGRGRGRGGPR 118
V +RE G GRGRGR GRGRGRGRGRG R
Sbjct: 46 VSGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGR 88
Score = 39.3 bits (90), Expect = 7e-04
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 97 GRGRGRGRGRGRGRGRGRGG 116
GRGRGRGRGRGRGRGR G
Sbjct: 81 GRGRGRGRGRGRGRGRPPSG 100
Score = 32.3 bits (72), Expect = 0.085
Identities = 16/22 (72%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 97 GRGRGRGRGRGR--GRGRGRGG 116
GRGRGRGRGRGR G G GG
Sbjct: 85 GRGRGRGRGRGRPPSGGSGLGG 106
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 97 GRGRGRGRGRGRGRGRGRGG 116
GRGRGRGR G G G G
Sbjct: 89 GRGRGRGRPPSGGSGLGGDG 108
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 82 DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
D + V S + E + G RGRGRGRGRGRGRGRG PR
Sbjct: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 82 DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
D + V S + E + G RGRGRGRGRGRGRGRG PR
Sbjct: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 82 DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
D + V S + E + G RGRGRGRGRGRGRGRG PR
Sbjct: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 43.9 bits (102), Expect = 3e-05
Identities = 22/37 (59%), Positives = 22/37 (59%)
Query: 82 DVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
D VKS RGRGRGRGRGRGRGRGG R
Sbjct: 320 DETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTR 356
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 43.9 bits (102), Expect = 3e-05
Identities = 22/37 (59%), Positives = 22/37 (59%)
Query: 82 DVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
D VKS RGRGRGRGRGRGRGRGG R
Sbjct: 243 DETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTR 279
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 89 SKKREAVAGRGRG-RGRGRGRGRGRGRGGPR 118
S+ R GRGRG RGRG+G GRGRGRGG R
Sbjct: 319 SRGRGLSRGRGRGSRGRGKGMGRGRGRGGSR 349
Score = 36.6 bits (83), Expect = 0.005
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 98 RGRGRGRGRGRGRGRGRGG 116
RGRG+G GRGRGRG RGG
Sbjct: 333 RGRGKGMGRGRGRGGSRGG 351
Score = 32.3 bits (72), Expect = 0.085
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 97 GRGRGRGRGRGRGRGRG 113
GRG+G GRGRGRG RG
Sbjct: 334 GRGKGMGRGRGRGGSRG 350
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 86 KVKSKKREAVAGRGRG-RGRG-----RGRGRGRGRGGPRR 119
K S + GRGRG RGRG RGRG GRG G R
Sbjct: 231 KEGSSRGRGSRGRGRGYRGRGSRGGSRGRGMGRGSRGRGR 270
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 86 KVKSKKREAVAGRGRGRG-RGRG-RGRGRGRG 115
+ K RGRGRG RGRG RG RGRG
Sbjct: 229 RAKEGSSRGRGSRGRGRGYRGRGSRGGSRGRG 260
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 89 SKKREAVAGRGRGRGRGRGRGRGRGRGG 116
S+ R GRGRGRG RG G +GG
Sbjct: 332 SRGRGKGMGRGRGRGGSRG---GMNKGG 356
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 40.4 bits (93), Expect = 3e-04
Identities = 19/20 (95%), Positives = 19/20 (95%), Gaps = 1/20 (5%)
Query: 98 RGRGRGRGRGRGRGRG-RGG 116
RGRGRGRGRGRGRGRG RGG
Sbjct: 34 RGRGRGRGRGRGRGRGARGG 53
Score = 33.5 bits (75), Expect = 0.038
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 97 GRGRGRGRGRGRGRGRGR 114
GRGRGRGRGRGRG G+
Sbjct: 37 GRGRGRGRGRGRGARGGK 54
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 99 GRGRG-RGRGRGRGRGRGGPR 118
G G G RGRGRGRGRGRG R
Sbjct: 28 GFGSGIRGRGRGRGRGRGRGR 48
>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
sapiens]
Length = 95
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
M F L + V +ELKN + GT+ VD +N L + +T + P + ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93
IRG+ +RY LP LL D K ++++
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ 95
>gi|47174861 peter pan homolog [Homo sapiens]
Length = 473
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/35 (60%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 85 PKVKSKKREAVAGRG-RGRGRGRGRGRGRGRGGPR 118
PK K K + A A RG RG R GRGRGRGR G R
Sbjct: 437 PKTKDKSQGAQARRGPRGASRDGGRGRGRGRPGKR 471
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 87 VKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
+ S + + RGRG GRGRGRGRGRG P
Sbjct: 824 LSSGRGRGIHSRGRGAVHGRGRGRGRGRGVP 854
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 97 GRGRGRGRGRGRGRGRGRGG 116
GRG GRGRGRGRGRG G
Sbjct: 836 GRGAVHGRGRGRGRGRGVPG 855
Score = 33.1 bits (74), Expect = 0.050
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 84 EPKVKSKKREAVA-GRGRG---RGRGRGRGRGRGRGGPR 118
E ++++ KR ++ GRGRG RGRG GRGRGRG R
Sbjct: 813 ELQLEAAKRGILSSGRGRGIHSRGRGAVHGRGRGRGRGR 851
>gi|239755681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 37.0 bits (84), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 96 AGRGRGRGRGRGRGRGRGRG 115
+GRGRGRG+G+GRG RGRG
Sbjct: 437 SGRGRGRGQGQGRGCSRGRG 456
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
GRGRG+G+GRG RGRG G
Sbjct: 440 GRGRGQGQGRGCSRGRGHG 458
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 101 GRGRGRGRGRGRGRGGPR 118
G GRGRGRG+G+GRG R
Sbjct: 436 GSGRGRGRGQGQGRGCSR 453
>gi|239750150 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 37.0 bits (84), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 96 AGRGRGRGRGRGRGRGRGRG 115
+GRGRGRG+G+GRG RGRG
Sbjct: 437 SGRGRGRGQGQGRGCSRGRG 456
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
GRGRG+G+GRG RGRG G
Sbjct: 440 GRGRGQGQGRGCSRGRGHG 458
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 101 GRGRGRGRGRGRGRGGPR 118
G GRGRGRG+G+GRG R
Sbjct: 436 GSGRGRGRGQGQGRGCSR 453
>gi|239744460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 37.0 bits (84), Expect = 0.003
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 96 AGRGRGRGRGRGRGRGRGRG 115
+GRGRGRG+G+GRG RGRG
Sbjct: 437 SGRGRGRGQGQGRGCSRGRG 456
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
GRGRG+G+GRG RGRG G
Sbjct: 440 GRGRGQGQGRGCSRGRGHG 458
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 101 GRGRGRGRGRGRGRGGPR 118
G GRGRGRG+G+GRG R
Sbjct: 436 GSGRGRGRGQGQGRGCSR 453
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 97 GRGRGRGRGRGRGRGRGRGGPRR 119
GRGRG GRGRGRGRGRG R
Sbjct: 186 GRGRGGFGGRGRGRGRGRGALAR 208
Score = 28.9 bits (63), Expect = 0.94
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 92 REAVAGRGRGRGRGRG 107
R GRGRGRGRGRG
Sbjct: 189 RGGFGGRGRGRGRGRG 204
>gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
Length = 873
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 98 RGRGRGRGRGRGRGRGRGGPR 118
R RGRGR +GRGRGR RG PR
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPR 761
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 97 GRGRGRGRGRGRGRGRGRGGPR 118
GRGR +GRGRGR RGR RG R
Sbjct: 744 GRGRPKGRGRGRPRGRPRGSKR 765
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 88 KSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
+S ++ G R RGRGR +GRGRG PR
Sbjct: 727 QSANSSSMNGLSSLRKRGRGRPKGRGRGRPR 757
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 89 SKKREAVAGRGRGRGRGRGRGRGRG 113
S R+ GR +GRGRGR RGR RG
Sbjct: 738 SSLRKRGRGRPKGRGRGRPRGRPRG 762
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 90 KKREAVAGRGRGRGRGRGRGRGRGR 114
+KR +GRGRGR RGR RG R
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPRGSKR 765
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 87 VKSKKREAVAGRGRGRGRGRGRGRGR 112
++ + R GRGRGR RGR RG R
Sbjct: 740 LRKRGRGRPKGRGRGRPRGRPRGSKR 765
>gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]
Length = 873
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 98 RGRGRGRGRGRGRGRGRGGPR 118
R RGRGR +GRGRGR RG PR
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPR 761
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 97 GRGRGRGRGRGRGRGRGRGGPR 118
GRGR +GRGRGR RGR RG R
Sbjct: 744 GRGRPKGRGRGRPRGRPRGSKR 765
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 88 KSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
+S ++ G R RGRGR +GRGRG PR
Sbjct: 727 QSANSSSMNGLSSLRKRGRGRPKGRGRGRPR 757
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 89 SKKREAVAGRGRGRGRGRGRGRGRG 113
S R+ GR +GRGRGR RGR RG
Sbjct: 738 SSLRKRGRGRPKGRGRGRPRGRPRG 762
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 90 KKREAVAGRGRGRGRGRGRGRGRGR 114
+KR +GRGRGR RGR RG R
Sbjct: 741 RKRGRGRPKGRGRGRPRGRPRGSKR 765
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 87 VKSKKREAVAGRGRGRGRGRGRGRGR 112
++ + R GRGRGR RGR RG R
Sbjct: 740 LRKRGRGRPKGRGRGRPRGRPRGSKR 765
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/23 (82%), Positives = 19/23 (82%), Gaps = 3/23 (13%)
Query: 97 GRGRG-RGRGRG--RGRGRGRGG 116
GRGRG RGRG G RGRGRGRGG
Sbjct: 1691 GRGRGSRGRGGGGTRGRGRGRGG 1713
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/21 (80%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Query: 99 GRGRGRGRGRG-RGRGRGGPR 118
GRGRG GRGRG RGRG GG R
Sbjct: 1686 GRGRG-GRGRGSRGRGGGGTR 1705
Score = 28.9 bits (63), Expect = 0.94
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 89 SKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
S+ R RGRGRGRG GRG RG R
Sbjct: 1696 SRGRGGGGTRGRGRGRG---GRGASRGATR 1722
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 91 KREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
K GRGR GR GRGRGG R
Sbjct: 1666 KTRGTGGRGRWGRWGRWSRGGRGRGGRGR 1694
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/34 (52%), Positives = 18/34 (52%)
Query: 86 KVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
K SK RE R RGR R R R R RGRG R
Sbjct: 409 KRTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSR 442
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 88 KSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
+S+ R + R R + R R RGR R G R
Sbjct: 442 RSRSRSRRSRRSRSQSSSRSRSRGRRRSGNR 472
>gi|169203160 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 97 GRGRGRGRGRGRGRGRGR 114
G RG GRGRGRGRGRGR
Sbjct: 425 GPCRGCGRGRGRGRGRGR 442
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 99 GRGRGRGRGRGRGRGRG 115
G RG GRGRGRGRGRG
Sbjct: 425 GPCRGCGRGRGRGRGRG 441
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 101 GRGRGRGRGRGRGRGGPRR 119
G RG GRGRGRGRG RR
Sbjct: 425 GPCRGCGRGRGRGRGRGRR 443
>gi|169203656 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 97 GRGRGRGRGRGRGRGRGR 114
G RG GRGRGRGRGRGR
Sbjct: 425 GPCRGCGRGRGRGRGRGR 442
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 99 GRGRGRGRGRGRGRGRG 115
G RG GRGRGRGRGRG
Sbjct: 425 GPCRGCGRGRGRGRGRG 441
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 101 GRGRGRGRGRGRGRGGPRR 119
G RG GRGRGRGRG RR
Sbjct: 425 GPCRGCGRGRGRGRGRGRR 443
>gi|169202387 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 97 GRGRGRGRGRGRGRGRGR 114
G RG GRGRGRGRGRGR
Sbjct: 425 GPCRGCGRGRGRGRGRGR 442
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 99 GRGRGRGRGRGRGRGRG 115
G RG GRGRGRGRGRG
Sbjct: 425 GPCRGCGRGRGRGRGRG 441
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 101 GRGRGRGRGRGRGRGGPRR 119
G RG GRGRGRGRG RR
Sbjct: 425 GPCRGCGRGRGRGRGRGRR 443
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 33.5 bits (75), Expect = 0.038
Identities = 12/23 (52%), Positives = 21/23 (91%)
Query: 97 GRGRGRGRGRGRGRGRGRGGPRR 119
G+G+G+G+G+G+G+G+G+G RR
Sbjct: 185 GQGQGQGQGQGQGQGQGQGQGRR 207
Score = 31.2 bits (69), Expect = 0.19
Identities = 10/19 (52%), Positives = 19/19 (100%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
G+G+G+G+G+G+G+G+G+G
Sbjct: 179 GQGQGQGQGQGQGQGQGQG 197
Score = 31.2 bits (69), Expect = 0.19
Identities = 10/19 (52%), Positives = 19/19 (100%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
G+G+G+G+G+G+G+G+G+G
Sbjct: 181 GQGQGQGQGQGQGQGQGQG 199
Score = 31.2 bits (69), Expect = 0.19
Identities = 10/19 (52%), Positives = 19/19 (100%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
G+G+G+G+G+G+G+G+G+G
Sbjct: 183 GQGQGQGQGQGQGQGQGQG 201
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 97 GRGRGRGRGRGRGRGRGRG 115
G+G+G+G+G+G+G+GR G
Sbjct: 191 GQGQGQGQGQGQGQGRRPG 209
Score = 26.2 bits (56), Expect = 6.1
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 98 RGRGRGRGRGRGRGRGRG 115
+ G+G+G+G+G+G+G+G
Sbjct: 176 QAEGQGQGQGQGQGQGQG 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,444,353
Number of Sequences: 37866
Number of extensions: 196357
Number of successful extensions: 3589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 2167
Number of HSP's gapped (non-prelim): 881
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.