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Search of human proteins with 5901898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5901898 leucine rich repeat containing 23 isoform b [Homo
sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5901898 leucine rich repeat containing 23 isoform b [Homo sap... 637 0.0
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 508 e-144
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 508 e-144
gi|21389483 leucine-rich repeats and guanylate kinase domain con... 110 1e-24
gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo sap... 65 8e-11
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 59 7e-09
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 56 4e-08
gi|193083139 leucine rich repeat containing 32 precursor [Homo s... 55 1e-07
gi|5031707 leucine rich repeat containing 32 precursor [Homo sap... 55 1e-07
gi|62912470 leucine-rich repeat-containing G protein-coupled rec... 54 2e-07
gi|153792305 leucine rich repeat containing 58 [Homo sapiens] 53 3e-07
gi|4503743 flightless I homolog [Homo sapiens] 52 7e-07
gi|41349454 proline arginine-rich end leucine-rich repeat protei... 51 1e-06
gi|4506041 proline arginine-rich end leucine-rich repeat protein... 51 1e-06
gi|4505047 lumican precursor [Homo sapiens] 51 2e-06
gi|85986601 relaxin/insulin-like family peptide receptor 1 [Homo... 49 4e-06
gi|238908508 leucine-rich repeat and death domain-containing pro... 49 6e-06
gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens] 49 6e-06
gi|19718734 toll-like receptor 2 [Homo sapiens] 49 7e-06
gi|66472382 nischarin [Homo sapiens] 49 7e-06
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 47 2e-05
gi|27436867 slit and trk like 4 protein [Homo sapiens] 47 3e-05
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 46 4e-05
gi|54607118 leucine-rich repeats and immunoglobulin-like domains... 45 8e-05
gi|24308207 leucine rich repeat containing 47 [Homo sapiens] 45 8e-05
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 45 8e-05
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 45 8e-05
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 45 1e-04
gi|22749183 leucine rich repeat and Ig domain containing 2 [Homo... 44 1e-04
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 44 2e-04
>gi|5901898 leucine rich repeat containing 23 isoform b [Homo
sapiens]
Length = 312
Score = 637 bits (1642), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
Sbjct: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
Query: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
Sbjct: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
Query: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
Sbjct: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
Query: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
Sbjct: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
Query: 241 SREMKSLQYLNLRRSKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLEIHHNLRPRICSVP 300
SREMKSLQYLNLRRSKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLEIHHNLRPRICSVP
Sbjct: 241 SREMKSLQYLNLRRSKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLEIHHNLRPRICSVP 300
Query: 301 VLWAVWGAEWGA 312
VLWAVWGAEWGA
Sbjct: 301 VLWAVWGAEWGA 312
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 508 bits (1309), Expect = e-144
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
Sbjct: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
Query: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
Sbjct: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
Query: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
Sbjct: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
Query: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
Sbjct: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
Query: 241 SREMKSLQYLNLR 253
SREMKSLQYLNLR
Sbjct: 241 SREMKSLQYLNLR 253
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 508 bits (1309), Expect = e-144
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
Sbjct: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
Query: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
Sbjct: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
Query: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
Sbjct: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
Query: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
Sbjct: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
Query: 241 SREMKSLQYLNLR 253
SREMKSLQYLNLR
Sbjct: 241 SREMKSLQYLNLR 253
>gi|21389483 leucine-rich repeats and guanylate kinase domain
containing [Homo sapiens]
Length = 825
Score = 110 bits (276), Expect = 1e-24
Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 6/249 (2%)
Query: 16 DSEKEEDEKETEEGEDYRKEGEEFP-EEWLPTPLTEDMMKEGLSLLCKTGNGLAHAYVKL 74
DS+ +ED+ E E G + E E EE L E+ + + L L ++G+G Y+ L
Sbjct: 73 DSDGDEDQGEGEAGSEESSESEMLNLEEEFDGVLREEAVAKALHHLGRSGSGTEQVYLNL 132
Query: 75 EVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELP 134
+ +L D+ +L Y+HL+ +D+S N + DLS ++ + +LL L A N L + + P
Sbjct: 133 TLSGCNLIDVSILCGYVHLQKLDLSANKIEDLSCVSCMPYLLELNASQNNLTTFFNFKPP 192
Query: 135 -YLQIASFAYNQITDTEGIS-HPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLE 192
L+ A F++NQI++ +S + L L L GN I ++GL E +L + L N++
Sbjct: 193 KNLKKADFSHNQISEICDLSAYHALTKLILDGNEIEEISGL--EMCNNLIHLSLANNKIT 250
Query: 193 STLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL 252
+ G+N +K L L+ N ++ + GLEDL L L L NQI +L G L+ +NL
Sbjct: 251 TINGLNKLPIKILCLSNNQIEMITGLEDLKALQNLDLSHNQISSLQGLENH-DLLEVINL 309
Query: 253 RRSKTLAFR 261
+K R
Sbjct: 310 EDNKIAELR 318
>gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo
sapiens]
Length = 360
Score = 65.1 bits (157), Expect = 8e-11
Identities = 74/275 (26%), Positives = 119/275 (43%), Gaps = 40/275 (14%)
Query: 2 SDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMK------- 54
S+E E+ + + E+ ++GE+ GEE PEE P+ + +
Sbjct: 24 SEESGDEEGKKHSSGIVADLSEQSLKDGEE---RGEEDPEEEHELPVDMETINLDRDAED 80
Query: 55 -----------EGLSLLCKTGN-----GLAHAYVKLE----VKERDLTD-----IYLLRS 89
EG +L K L LE ++E DL D I L +
Sbjct: 81 VDLNHYRIGKIEGFEVLKKVKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEA 140
Query: 90 YIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQ-MNELPYLQIASFAYNQITD 148
L +DIS N L ++ ++ LT L L N++ + ++ L LQ+ N+I
Sbjct: 141 LTELEILDISFNLLRNIEGVDKLTRLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRA 200
Query: 149 TEGISH-PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLKNLY 206
E I LE+L L N I + LD L +L + ++ N+L G+ NL L+ LY
Sbjct: 201 IENIDTLTNLESLFLGKNKITKLQNLDA--LTNLTVLSMQSNRLTKIEGLQNLVNLRELY 258
Query: 207 LAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFS 241
L+ N ++ +EGLE+ + LT L + N+I + S
Sbjct: 259 LSHNGIEVIEGLENNNKLTMLDIASNRIKKIENIS 293
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 58.5 bits (140), Expect = 7e-09
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 73 KLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNE 132
+L ++ + LT ++ HLR ++ N +T + ++ L L+ L
Sbjct: 94 RLSLERQKLTVCPIINGEDHLRLLNFQHNFITRIQNISNLQKLISL-------------- 139
Query: 133 LPYLQIASFAYNQITDTEGISHPR-LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL 191
NQI + G+S R L L L N I ++ L E L SL ++L GNQ+
Sbjct: 140 -------DLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNL--ENLKSLDVLDLHGNQI 190
Query: 192 ESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYL 250
IN L +L+ L LA+N L V+ L L +LT L+LR NQI F R++ +L L
Sbjct: 191 TKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQIT----FVRDVDNLPCL 246
Score = 57.4 bits (137), Expect = 2e-08
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 21/229 (9%)
Query: 60 LCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLK 119
+C NG H + L + +T I + + L +D+ +N + ++S L+ L L L
Sbjct: 104 VCPIINGEDHLRL-LNFQHNFITRIQNISNLQKLISLDLYDNQIEEISGLSTLRCLRVLL 162
Query: 120 ADGNRLRS-AQMNELPYLQIASFAYNQITDTEGISHP-RLETLNLKGNSIHMVTGLDPEK 177
NR++ + + L L + NQIT E I+H L LNL N + V L+
Sbjct: 163 LGKNRIKKISNLENLKSLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNG-- 220
Query: 178 LISLHTVELRGNQLESTLGI-NLPKLKNLYLAQNMLK---KVEGLEDLSNLTTLHLRDNQ 233
L SL + LR NQ+ + NLP L++L+L+ N + V L D S+L+ + N
Sbjct: 221 LDSLTELNLRHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNP 280
Query: 234 IDTLSGFS----REMKSLQYLNLRR--------SKTLAFRPDQTPRGSH 270
I S + + M L+ L+++R + LA + ++ R SH
Sbjct: 281 IAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEKKRESH 329
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 157 LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKV 215
L +NL N+I + +D + +L ++L NQ+ G+N L KL L L+ N++ KV
Sbjct: 45 LHAVNLHCNNISKIEAID--HIWNLQHLDLSSNQISRIEGLNTLTKLCTLNLSCNLITKV 102
Query: 216 EGLEDLSNLTTLHLRDNQIDTLSG 239
EGLE+L NLT L++ N ID LSG
Sbjct: 103 EGLEELINLTRLNVSYNHIDDLSG 126
Score = 28.5 bits (62), Expect = 8.0
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 81 LTDIYLLRSYIHLRYVDISENHLTDLS---PLNYLTH-LLWLKADGNRLRSAQMNELPYL 136
+T + L I+L +++S NH+ DLS PL+ + H L ++ NR+ S + L +
Sbjct: 99 ITKVEGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHSNRIDSIH-HLLQCM 157
Query: 137 QIASFAYNQITDTEGISHP 155
F N I + +G +P
Sbjct: 158 VGLHFLTNLILEKDGDDNP 176
>gi|193083139 leucine rich repeat containing 32 precursor [Homo
sapiens]
Length = 662
Score = 54.7 bits (130), Expect = 1e-07
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 31/194 (15%)
Query: 90 YIHLRYVDISENHLTDLSP--LNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQIT 147
Y LR++D+S N ++ L P LTHL L NRL A +++ +
Sbjct: 72 YTALRHLDLSTNEISFLQPGAFQALTHLEHLSLAHNRLAMA-------TALSAGGLGPL- 123
Query: 148 DTEGISHPRLETLNLKGNSIHMVTGLDPEKLI----SLHTVELRGNQLESTLG---INLP 200
PR+ +L+L GNS++ +GL E+L+ SLHT+ L N L ++P
Sbjct: 124 -------PRVTSLDLSGNSLY--SGL-LERLLGEAPSLHTLSLAENSLTRLTRHTFRDMP 173
Query: 201 KLKNLYLAQNMLKKVE--GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRRSKTL 258
L+ L L N+L +E E L LT L+L N + +S FS ++ L+ L+L +
Sbjct: 174 ALEQLDLHSNVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDFS--LQQLRVLDLSCNSIE 231
Query: 259 AFRPDQTPRGSHHM 272
AF+ P+ +
Sbjct: 232 AFQTASQPQAEFQL 245
Score = 40.8 bits (94), Expect = 0.002
Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 41/177 (23%)
Query: 93 LRYVDISENHLTDLSPLNY--LTHLLWLKADGNR-----------------------LRS 127
LR + + N L DL P + L L L GNR LRS
Sbjct: 388 LRTLLLQGNALRDLPPYTFANLASLQRLNLQGNRVSPCGGPDEPGPSGCVAFSGITSLRS 447
Query: 128 AQM--NELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVE 185
+ NE+ L+ +F + +T+ + S+P LE + TG SL +
Sbjct: 448 LSLVDNEIELLRAGAFLHTPLTELDLSSNPGLE----------VATGALGGLEASLEVLA 497
Query: 186 LRGNQLESTLGINLPK---LKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSG 239
L+GN L L ++LP LK L LA+N L + +L L LR+N L G
Sbjct: 498 LQGNGL-MVLQVDLPCFICLKRLNLAENRLSHLPAWTQAVSLEVLDLRNNSFSLLPG 553
Score = 31.2 bits (69), Expect = 1.2
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 93 LRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIA----SFAYNQITD 148
L ++++S N LT +S + L L L N + + Q P + N++
Sbjct: 199 LTHLNLSRNSLTCISDFS-LQQLRVLDLSCNSIEAFQTASQPQAEFQLTWLDLRENKLLH 257
Query: 149 TEGISH-PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLE------STLGINLPK 201
++ PRL LNL N I + TG P+ +H + L + G L +
Sbjct: 258 FPDLAALPRLIYLNLSNNLIRLPTG-PPQDSKGIHAPSEGWSALPLSAPSGNASGRPLSQ 316
Query: 202 LKNLYLAQNMLKKVEG--LEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL 252
L NL L+ N ++ + LE L++L L+L N + T +R + SL L L
Sbjct: 317 LLNLDLSYNEIELIPDSFLEHLTSLCFLNLSRNCLRTFE--ARRLGSLPCLML 367
>gi|5031707 leucine rich repeat containing 32 precursor [Homo
sapiens]
Length = 662
Score = 54.7 bits (130), Expect = 1e-07
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 31/194 (15%)
Query: 90 YIHLRYVDISENHLTDLSP--LNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQIT 147
Y LR++D+S N ++ L P LTHL L NRL A +++ +
Sbjct: 72 YTALRHLDLSTNEISFLQPGAFQALTHLEHLSLAHNRLAMA-------TALSAGGLGPL- 123
Query: 148 DTEGISHPRLETLNLKGNSIHMVTGLDPEKLI----SLHTVELRGNQLESTLG---INLP 200
PR+ +L+L GNS++ +GL E+L+ SLHT+ L N L ++P
Sbjct: 124 -------PRVTSLDLSGNSLY--SGL-LERLLGEAPSLHTLSLAENSLTRLTRHTFRDMP 173
Query: 201 KLKNLYLAQNMLKKVE--GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRRSKTL 258
L+ L L N+L +E E L LT L+L N + +S FS ++ L+ L+L +
Sbjct: 174 ALEQLDLHSNVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDFS--LQQLRVLDLSCNSIE 231
Query: 259 AFRPDQTPRGSHHM 272
AF+ P+ +
Sbjct: 232 AFQTASQPQAEFQL 245
Score = 40.8 bits (94), Expect = 0.002
Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 41/177 (23%)
Query: 93 LRYVDISENHLTDLSPLNY--LTHLLWLKADGNR-----------------------LRS 127
LR + + N L DL P + L L L GNR LRS
Sbjct: 388 LRTLLLQGNALRDLPPYTFANLASLQRLNLQGNRVSPCGGPDEPGPSGCVAFSGITSLRS 447
Query: 128 AQM--NELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVE 185
+ NE+ L+ +F + +T+ + S+P LE + TG SL +
Sbjct: 448 LSLVDNEIELLRAGAFLHTPLTELDLSSNPGLE----------VATGALGGLEASLEVLA 497
Query: 186 LRGNQLESTLGINLPK---LKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSG 239
L+GN L L ++LP LK L LA+N L + +L L LR+N L G
Sbjct: 498 LQGNGL-MVLQVDLPCFICLKRLNLAENRLSHLPAWTQAVSLEVLDLRNNSFSLLPG 553
Score = 31.2 bits (69), Expect = 1.2
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 93 LRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIA----SFAYNQITD 148
L ++++S N LT +S + L L L N + + Q P + N++
Sbjct: 199 LTHLNLSRNSLTCISDFS-LQQLRVLDLSCNSIEAFQTASQPQAEFQLTWLDLRENKLLH 257
Query: 149 TEGISH-PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLE------STLGINLPK 201
++ PRL LNL N I + TG P+ +H + L + G L +
Sbjct: 258 FPDLAALPRLIYLNLSNNLIRLPTG-PPQDSKGIHAPSEGWSALPLSAPSGNASGRPLSQ 316
Query: 202 LKNLYLAQNMLKKVEG--LEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL 252
L NL L+ N ++ + LE L++L L+L N + T +R + SL L L
Sbjct: 317 LLNLDLSYNEIELIPDSFLEHLTSLCFLNLSRNCLRTFE--ARRLGSLPCLML 367
>gi|62912470 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 1 [Homo sapiens]
Length = 967
Score = 53.5 bits (127), Expect = 2e-07
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 95 YVDISENHLTDLSP--LNYLTHLLWLKADGNRLR---SAQMNELPYLQIASFAYNQI--T 147
Y+D+S N+LT+L P ++L L L+ GN L + L L+I NQ+
Sbjct: 70 YLDLSMNNLTELQPGLFHHLRFLEELRLSGNHLSHIPGQAFSGLYSLKILMLQNNQLGGI 129
Query: 148 DTEGI-SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLES---TLGINLPKLK 203
E + P L++L L N I +V E L SL + L N L NLP L+
Sbjct: 130 PAEALWELPSLQSLRLDANLISLVPERSFEGLSSLRHLWLDDNALTEIPVRALNNLPALQ 189
Query: 204 NLYLAQNMLKKVE--GLEDLSNLTTLHLRDNQIDTLSGFSRE-MKSLQYLNLRRSKTLAF 260
+ LA N + + ++L++L LHL +N+I L S E + +L+ L+L +K F
Sbjct: 190 AMTLALNRISHIPDYAFQNLTSLVVLHLHNNRIQHLGTHSFEGLHNLETLDLNYNKLQEF 249
Score = 37.4 bits (85), Expect = 0.017
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 116 LWLKADGNRLR-SAQMNEL-PYLQIASFAYNQITDTE-GISHPR--LETLNLKGNSIHMV 170
+ L AD + L SA +L P + N +T+ + G+ H LE L L GN + +
Sbjct: 46 IMLSADCSELGLSAVPGDLDPLTAYLDLSMNNLTELQPGLFHHLRFLEELRLSGNHLSHI 105
Query: 171 TGLDPEKLISLHTVELRGNQL---ESTLGINLPKLKNLYLAQNMLKKV--EGLEDLSNLT 225
G L SL + L+ NQL + LP L++L L N++ V E LS+L
Sbjct: 106 PGQAFSGLYSLKILMLQNNQLGGIPAEALWELPSLQSLRLDANLISLVPERSFEGLSSLR 165
Query: 226 TLHLRDNQIDTLSGFSREMKSLQYLNLRRSKTLA 259
L L DN + + +++L L ++ TLA
Sbjct: 166 HLWLDDNALTEI-----PVRALNNLPALQAMTLA 194
Score = 33.5 bits (75), Expect = 0.25
Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 85 YLLRSYIHLRYVDISENHLTDLSPLNY--LTHLLWLKADGNRLRS--AQMNELPYLQIAS 140
Y ++ L + + N + L ++ L +L L + N+L+ + L LQ
Sbjct: 204 YAFQNLTSLVVLHLHNNRIQHLGTHSFEGLHNLETLDLNYNKLQEFPVAIRTLGRLQELG 263
Query: 141 FAYNQIT---DTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQ------- 190
F N I + + +P L+T++ N I V + L LHT+ L G
Sbjct: 264 FHNNNIKAIPEKAFMGNPLLQTIHFYDNPIQFVGRSAFQYLPKLHTLSLNGAMDIQEFPD 323
Query: 191 -------------------LESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRD 231
L S + LP+L+ L L+ N ++++ L L + L+
Sbjct: 324 LKGTTSLEILTLTRAGIRLLPSGMCQQLPRLRVLELSHNQIEELPSLHRCQKLEEIGLQH 383
Query: 232 NQI-----DTLSGFSREMKSLQYLNLRRSKTLAFRPD 263
N+I DT S ++ SLQ L+L + + P+
Sbjct: 384 NRIWEIGADTFS----QLSSLQALDLSWNAIRSIHPE 416
Score = 29.3 bits (64), Expect = 4.7
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 33/144 (22%)
Query: 96 VDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTE----- 150
+DI E DL L L +A L S +LP L++ ++NQI +
Sbjct: 316 MDIQE--FPDLKGTTSLEILTLTRAGIRLLPSGMCQQLPRLRVLELSHNQIEELPSLHRC 373
Query: 151 ------GISHPR--------------LETLNLKGNSIHMVTGLDPEKLISLHT---VELR 187
G+ H R L+ L+L N+I + PE +LH+ ++L
Sbjct: 374 QKLEEIGLQHNRIWEIGADTFSQLSSLQALDLSWNAIR---SIHPEAFSTLHSLVKLDLT 430
Query: 188 GNQLESTLGINLPKLKNLYLAQNM 211
NQL + L L +L L N+
Sbjct: 431 DNQLTTLPLAGLGGLMHLKLKGNL 454
>gi|153792305 leucine rich repeat containing 58 [Homo sapiens]
Length = 371
Score = 53.1 bits (126), Expect = 3e-07
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 20/219 (9%)
Query: 43 WLPTPLTEDMMKEGLSLLCKTGNGLAHAYVKLEVKERDLTDI--YLLRSYIHLRYVDISE 100
W ++ + ++ L + G A ++L + L + L + HL+ +D+S
Sbjct: 18 WSRLSVSTETLESELEARGEERRGAREALLRLLLPHNRLVSLPRALGSGFPHLQLLDVSG 77
Query: 101 NHLTDLSP-LNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLET 159
N LT L P L L L L A NRL P A + + + L+
Sbjct: 78 NALTALGPELLALRGLRTLLAKNNRLGG------PSALPKGLAQSPLCRS-------LQV 124
Query: 160 LNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLG--INLPKLKNLYLAQNMLKKV-E 216
LNL GN V E L +L T+ L GNQL+S NL L+ LYL N +K++
Sbjct: 125 LNLSGNCFQEVPASLLE-LRALQTLSLGGNQLQSIPAEIENLQSLECLYLGGNFIKEIPP 183
Query: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRRS 255
L +L +L L L DN+I ++ ++ SL+ L+L +
Sbjct: 184 ELGNLPSLNYLVLCDNKIQSIPPQLSQLHSLRSLSLHNN 222
>gi|4503743 flightless I homolog [Homo sapiens]
Length = 1269
Score = 52.0 bits (123), Expect = 7e-07
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 93 LRYVDISENHLTDLSP-LNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAY-------- 143
L Y+D+SEN L L P + L HL L +GN L AQ+ +LP + +
Sbjct: 153 LLYLDLSENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMTALQTLHLRSTQRTQ 212
Query: 144 -NQITDTEGISH---------------------PRLETLNLKGNSIHMVTGLDPEKLISL 181
N T EG+S+ P L LNL N I ++ L ++ + +
Sbjct: 213 SNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELS-LCIDQWVHV 271
Query: 182 HTVELRGNQLES--TLGINLPKLKNLYLAQNMLK---KVEGLEDLSNLTTLHLRDNQID 235
T+ L NQL S + L KLK LYL N L G+ L+NL +N ++
Sbjct: 272 ETLNLSRNQLTSLPSAICKLSKLKKLYLNSNKLDFDGLPSGIGKLTNLEEFMAANNNLE 330
Score = 40.4 bits (93), Expect = 0.002
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 93 LRYVDISENHLTDLS-PLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEG 151
L +D+S N LT+ L ++L L N + + N+L ++ + Y +++
Sbjct: 106 LSVLDLSHNQLTECPRELENAKNMLVLNLSHNSIDTIP-NQL-FINLTDLLYLDLSENRL 163
Query: 152 ISHP-------RLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQ-LESTLGINLPKLK 203
S P L+TL L GN + + +L T+ LR Q +S L +L L
Sbjct: 164 ESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLEGLS 223
Query: 204 NLY---LAQNMLKKV-EGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRRSK 256
NL L+ N L +V E L L +L L+L NQI LS + ++ LNL R++
Sbjct: 224 NLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQ 280
>gi|41349454 proline arginine-rich end leucine-rich repeat protein
precursor [Homo sapiens]
Length = 382
Score = 51.2 bits (121), Expect = 1e-06
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 79 RDLTDIYLLRSYIHLRYVDISENHLTDLSPLNY--LTHLLWLKADGNRLRSAQ---MNEL 133
R+L + ++ IH Y+ + N +T+L ++ T L W+ D NR+R + +L
Sbjct: 92 RNLRKVPVIPPRIH--YLYLQNNFITELPVESFQNATGLRWINLDNNRIRKIDQRVLEKL 149
Query: 134 PYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLES 193
P L NQ+ + LE L L N I + KL +L ++L+ N+L
Sbjct: 150 PGLVFLYMEKNQLEEVPSALPRNLEQLRLSQNHISRIPPGVFSKLENLLLLDLQHNRLSD 209
Query: 194 TLGI-------NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTL-SGFSREMK 245
G+ L L L LA N+L+K+ + + L+L N+I+T+ +G+ +
Sbjct: 210 --GVFKPDTFHGLKNLMQLNLAHNILRKMPPRVPTA-IHQLYLDSNKIETIPNGYFKSFP 266
Query: 246 SLQYLNLRRSK 256
+L ++ L +K
Sbjct: 267 NLAFIRLNYNK 277
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 157 LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
L +NL N I + EKL L + + NQLE L+ L L+QN + ++
Sbjct: 128 LRWINLDNNRIRKIDQRVLEKLPGLVFLYMEKNQLEEVPSALPRNLEQLRLSQNHISRIP 187
Query: 217 G--LEDLSNLTTLHLRDNQI-------DTLSGFSREMKSLQYLNLRRSKTLAFRPDQTPR 267
L NL L L+ N++ DT G +K+L LNL + L P + P
Sbjct: 188 PGVFSKLENLLLLDLQHNRLSDGVFKPDTFHG----LKNLMQLNLAHN-ILRKMPPRVPT 242
Query: 268 GSHHMY 273
H +Y
Sbjct: 243 AIHQLY 248
>gi|4506041 proline arginine-rich end leucine-rich repeat protein
precursor [Homo sapiens]
Length = 382
Score = 51.2 bits (121), Expect = 1e-06
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 79 RDLTDIYLLRSYIHLRYVDISENHLTDLSPLNY--LTHLLWLKADGNRLRSAQ---MNEL 133
R+L + ++ IH Y+ + N +T+L ++ T L W+ D NR+R + +L
Sbjct: 92 RNLRKVPVIPPRIH--YLYLQNNFITELPVESFQNATGLRWINLDNNRIRKIDQRVLEKL 149
Query: 134 PYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLES 193
P L NQ+ + LE L L N I + KL +L ++L+ N+L
Sbjct: 150 PGLVFLYMEKNQLEEVPSALPRNLEQLRLSQNHISRIPPGVFSKLENLLLLDLQHNRLSD 209
Query: 194 TLGI-------NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTL-SGFSREMK 245
G+ L L L LA N+L+K+ + + L+L N+I+T+ +G+ +
Sbjct: 210 --GVFKPDTFHGLKNLMQLNLAHNILRKMPPRVPTA-IHQLYLDSNKIETIPNGYFKSFP 266
Query: 246 SLQYLNLRRSK 256
+L ++ L +K
Sbjct: 267 NLAFIRLNYNK 277
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 157 LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
L +NL N I + EKL L + + NQLE L+ L L+QN + ++
Sbjct: 128 LRWINLDNNRIRKIDQRVLEKLPGLVFLYMEKNQLEEVPSALPRNLEQLRLSQNHISRIP 187
Query: 217 G--LEDLSNLTTLHLRDNQI-------DTLSGFSREMKSLQYLNLRRSKTLAFRPDQTPR 267
L NL L L+ N++ DT G +K+L LNL + L P + P
Sbjct: 188 PGVFSKLENLLLLDLQHNRLSDGVFKPDTFHG----LKNLMQLNLAHN-ILRKMPPRVPT 242
Query: 268 GSHHMY 273
H +Y
Sbjct: 243 AIHQLY 248
>gi|4505047 lumican precursor [Homo sapiens]
Length = 338
Score = 50.8 bits (120), Expect = 2e-06
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 142 AYNQITDTEGI--SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINL 199
A+ +TD + + H LE +KG KL L + + N L ++G
Sbjct: 85 AFENVTDLQWLILDHNLLENSKIKGRVF--------SKLKQLKKLHINHNNLTESVGPLP 136
Query: 200 PKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQI--DTLSGFSREMKSLQYLNL 252
L++L L N + K+ E L NLT +HL+ N++ D +S + +KSL+YL+L
Sbjct: 137 KSLEDLQLTHNKITKLGSFEGLVNLTFIHLQHNRLKEDAVSAAFKGLKSLEYLDL 191
>gi|85986601 relaxin/insulin-like family peptide receptor 1 [Homo
sapiens]
Length = 757
Score = 49.3 bits (116), Expect = 4e-06
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 24/217 (11%)
Query: 69 HAYVKLEVKERDLTDI--YLLRSYIHLRYVDISENHLTDLSP--LNYLTHLLWLKADGNR 124
H KL ++ +T I Y R L + +S N +T L P L L WL + N
Sbjct: 150 HDLQKLYLQNNKITSISIYAFRGLNSLTKLYLSHNRITFLKPGVFEDLHRLEWLIIEDNH 209
Query: 125 LRSAQ------MNELPYLQIASFAYNQITDTEGISH-PRLETLNLKGNSIHMVTGLDPEK 177
L +N L L + + ++ D H PRL L+L+GN IH + L
Sbjct: 210 LSRISPPTFYGLNSLILLVLMNNVLTRLPDKPLCQHMPRLHWLDLEGNHIHNLRNLTFIS 269
Query: 178 LISLHTVELRGNQL----ESTLGINLPKLKNLYLAQNMLKKVEGL--EDLSNLTTLHLRD 231
+L + +R N++ E+T L KL L L N ++ + L +DL L+ L+L
Sbjct: 270 CSNLTVLVMRKNKINHLNENTFA-PLQKLDELDLGSNKIENLPPLIFKDLKELSQLNLSY 328
Query: 232 NQIDTLSG--FSREMK----SLQYLNLRRSKTLAFRP 262
N I + F +K SL+ + + + FRP
Sbjct: 329 NPIQKIQANQFDYLVKLKSLSLEGIEISNIQQRMFRP 365
>gi|238908508 leucine-rich repeat and death domain-containing
protein [Homo sapiens]
Length = 860
Score = 48.9 bits (115), Expect = 6e-06
Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 89 SYIHLRYVDISENHLTDL--SPLNYLT-HLLWLKADGNRLRSAQMNELPYLQIASFAYNQ 145
S I+L+Y+D+ +N + + S N ++ H+L L + ++ L LQ+ + NQ
Sbjct: 531 SLINLKYLDLGKNQIKKIPASISNMISLHVLILCCNKFETFPRELCTLENLQVLDLSENQ 590
Query: 146 IT--DTEGISHPRLETLNLKGNS-IHMVTGL-DPEKLISLHTVELRGNQLESTLG--INL 199
+ ++ + ++ LN N IH L + L L+ +++G +L G N+
Sbjct: 591 LQKISSDICNLKGIQKLNFSSNQFIHFPIELCQLQSLEQLNISQIKGRKLTRLPGELSNM 650
Query: 200 PKLKNLYLAQNMLKKV-EGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL 252
+LK L ++ N ++++ + +L NL +LH +NQI L + LQ LNL
Sbjct: 651 TQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYLPPSLLSLNDLQQLNL 704
>gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens]
Length = 699
Score = 48.9 bits (115), Expect = 6e-06
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 15/178 (8%)
Query: 93 LRYVDISENHLT--DLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTE 150
L + ++EN+L D L+ L L+ L+ +GN L A +N L + + S AY ++ +
Sbjct: 416 LEELKVNENNLQAIDEESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNK 475
Query: 151 GISHPR-----LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLEST-----LGINLP 200
P+ +E L L+ N I +T + ++ + LR N++E IN
Sbjct: 476 FRIIPQGLPGSIEELYLENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQE 535
Query: 201 KLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSG--FSREMKSLQYLNLRRSK 256
L+++ L+ N L V S L L L NQI+ + G F L+YL L +K
Sbjct: 536 NLESIDLSYNKLYHVPSYLPKS-LLHLVLLGNQIERIPGYVFGHMEPGLEYLYLSFNK 592
Score = 45.4 bits (106), Expect = 6e-05
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 123 NRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLH 182
N R + L Y +I N+I I+ LE+++L N ++ V P+ L LH
Sbjct: 506 NHTRKINVIVLRYNKIEE---NRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSL--LH 560
Query: 183 TVELRGNQLESTLGINL----PKLKNLYLAQNMLKKVEGLEDLS------NLTTLHLRDN 232
V L GNQ+E G P L+ LYL+ N L +G++ +S +L L L N
Sbjct: 561 LV-LLGNQIERIPGYVFGHMEPGLEYLYLSFNKLAD-DGMDRVSFYGAYHSLRELFLDHN 618
Query: 233 QIDTLSGFSREMKSLQYLNLRRSKTLAFRPDQ 264
+ ++ +EMK+L +L L +K P++
Sbjct: 619 DLKSIPPGIQEMKALHFLRLNNNKIRNILPEE 650
>gi|19718734 toll-like receptor 2 [Homo sapiens]
Length = 784
Score = 48.5 bits (114), Expect = 7e-06
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 93 LRYVDISENHLTDLSPLNYLTHLLW-----LKADGNRLRSAQMNELPYLQIASFAYNQIT 147
L Y+D+SEN + + N W L N L S + L + + I+
Sbjct: 362 LEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDIS 421
Query: 148 DTEGISHP-------RLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLP 200
S P +++ LNL IH VTG P+ +L +++ N L + +NLP
Sbjct: 422 KNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPK---TLEILDVSNNNL-NLFSLNLP 477
Query: 201 KLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLS 238
+LK LY+++N L + L L L + N I T S
Sbjct: 478 QLKELYISRNKLMTLPDASLLPMLLVLKISRNAITTFS 515
Score = 32.7 bits (73), Expect = 0.42
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 156 RLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL------ESTLGINLPKLKNLYLAQ 209
R++ + ++ + + +V L + L SL ++L N + S P L+ L L Q
Sbjct: 337 RVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQ 396
Query: 210 NML----KKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRRSK 256
N L K E L L NLT + + N ++ + + ++YLNL ++
Sbjct: 397 NHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTR 447
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 48.5 bits (114), Expect = 7e-06
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 155 PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN--LPKLKNLYLAQNML 212
P++E L+L N + +V L + L +L ++L N+L S G++ L +K L LA N+L
Sbjct: 310 PKIEFLDLSHNGLLVVDNL--QHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLL 367
Query: 213 KKVEGLEDLSNLTTLHLRDNQIDTL 237
+ + GL L +L L LRDN+I+ +
Sbjct: 368 ESLSGLHKLYSLVNLDLRDNRIEQM 392
Score = 41.6 bits (96), Expect = 0.001
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 31/127 (24%)
Query: 93 LRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI 152
+ ++D+S N L + L +L +L+ L +YN+++ EG+
Sbjct: 312 IEFLDLSHNGLLVVDNLQHLYNLVHL---------------------DLSYNKLSSLEGL 350
Query: 153 SHPRL---ETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI----NLPKLKNL 205
H +L +TLNL GN + ++GL KL SL ++LR N++E + +LP L+++
Sbjct: 351 -HTKLGNIKTLNLAGNLLESLSGL--HKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHV 407
Query: 206 YLAQNML 212
L N L
Sbjct: 408 SLLNNPL 414
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 47.4 bits (111), Expect = 2e-05
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 176 EKLISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQI 234
EK + L + L N + ++ L KL+ L L+ N + K+EG+E++ NL L+L N+I
Sbjct: 122 EKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEI 181
Query: 235 DTLS-GFSREMKSLQYLNLRRSK 256
+ + +++KSL+ LNL+ +K
Sbjct: 182 EHIPVWLGKKLKSLRVLNLKGNK 204
Score = 43.9 bits (102), Expect = 2e-04
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 129 QMNELPYLQIASFAYNQITDTEGISHP-RLETLNLKGNSIHMVTGLDPEKLISLHTVELR 187
++++L L+ + +YN+I+ EGI + L+ LNL GN I + +KL SL + L+
Sbjct: 142 KLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLK 201
Query: 188 GNQLESTLGIN----LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSG 239
GN++ S I+ L L +L L +N V L T HLR +++L G
Sbjct: 202 GNKISSLQDISKLKPLQDLISLILVEN---PVVTLPHYLQFTIFHLR--SLESLEG 252
>gi|27436867 slit and trk like 4 protein [Homo sapiens]
Length = 837
Score = 46.6 bits (109), Expect = 3e-05
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 144 NQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLE---STLGINLP 200
+ TD EG L+ L+L N I ++ G L +L + L GNQ+E + L
Sbjct: 395 SDFTDFEG-----LDLLHLGSNQITVIKGDVFHNLTNLRRLYLNGNQIERLYPEIFSGLH 449
Query: 201 KLKNLYLAQNMLKKVEG--LEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRRSK 256
L+ LYL N++K++ + + NL L+L +N + +L + L LNLR +K
Sbjct: 450 NLQYLYLEYNLIKEISAGTFDSMPNLQLLYLNNNLLKSLPVYIFSGAPLARLNLRNNK 507
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 46.2 bits (108), Expect = 4e-05
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 157 LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKV 215
L+T+ L I + L E L +LH++ L+GN+++ + +P L+ L LA N +++V
Sbjct: 46 LQTVRLDREGITTIRNL--EGLQNLHSLYLQGNKIQQIENLACIPSLRFLSLAGNQIRQV 103
Query: 216 EGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL 252
E L DL L L L +N I+TL +SL LNL
Sbjct: 104 ENLLDLPCLQFLDLSENLIETLK-LDEFPQSLLILNL 139
>gi|54607118 leucine-rich repeats and immunoglobulin-like domains 1
[Homo sapiens]
Length = 1093
Score = 45.1 bits (105), Expect = 8e-05
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 86 LLRSYIHLRYVDISENHLTDLSPLNY-LTHLLWLKADGNRLRSAQ------MNELPYLQI 138
L RS + LR +S+N +T L + L L L + NR+R + +N L L++
Sbjct: 186 LSRSLLTLR---LSKNRITQLPVRAFKLPRLTQLDLNRNRIRLIEGLTFQGLNSLEVLKL 242
Query: 139 ASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN 198
+++TD ++ L+L+ NS+ V L +LH + L N +
Sbjct: 243 QRNNISKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSIARIHRKG 302
Query: 199 ---LPKLKNLYLAQNMLKKV--EGLEDLSNLTTLHLRDNQIDTLS-GFSREMKSLQYLNL 252
KL L L+ N L ++ E L +LS+L+ L L N I ++ G + ++SL+ L+L
Sbjct: 303 WSFCQKLHELVLSFNNLTRLDEESLAELSSLSVLRLSHNSISHIAEGAFKGLRSLRVLDL 362
Query: 253 RRSKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLE 287
++ D + G+ D ++ +F K++
Sbjct: 363 DHNEISGTIEDTS--GAFSGLDSLSKLTLFGNKIK 395
Score = 28.9 bits (63), Expect = 6.1
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 158 ETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEG 217
++L+ G + + G P SL+ + ++++ +LP L+ +YL N L V
Sbjct: 50 DSLDCGGRGLAALPGDLPSWTRSLNLSYNKLSEIDPAGFEDLPNLQEVYLNNNELTAVPS 109
Query: 218 L-EDLSNLTTLHLRDNQIDTLSGFS-REMKSLQYLNLRRSKTLAFRPDQTPRG 268
L S++ +L L+ N+I ++ G + SL+ L+L + R P G
Sbjct: 110 LGAASSHVVSLFLQHNKIRSVEGSQLKAYLSLEVLDLSLNNITEVRNTCFPHG 162
>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
Length = 583
Score = 45.1 bits (105), Expect = 8e-05
Identities = 66/263 (25%), Positives = 102/263 (38%), Gaps = 45/263 (17%)
Query: 7 LEDSEPDQDDSEKEEDEKETEEG----EDYRKEGEEFPEEWLPTPLTEDMMKEGLSLLCK 62
+ +S P+ + +E+E + G E R G + P PL + G L
Sbjct: 6 VSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGCGSLRA 65
Query: 63 TGNGLAHAYVKLE--VKERDLTDIYL---LRSYIHLRYVDISENHLTDLSPLNYLTHLLW 117
G GLA +L V R+ L L LR +D+S N L L P
Sbjct: 66 PGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPP--------- 116
Query: 118 LKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI---SHPRLETLNLKGNSIHMVTGLD 174
G L A+ LP LQ + + N++ + PRL++LNL GN +
Sbjct: 117 ----GQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDSF---- 168
Query: 175 PEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE-GLEDLSNLTTLHLRDNQ 233
P +L LP L L A N L+++ + L++L TL L +NQ
Sbjct: 169 PAELFRPGA---------------LPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQ 213
Query: 234 IDTLSGFSREMKSLQYLNLRRSK 256
+ + + L+ +N R +K
Sbjct: 214 LSEIPAELADCPKLKEINFRGNK 236
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform 1
[Homo sapiens]
Length = 1722
Score = 45.1 bits (105), Expect = 8e-05
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 103 LTDLSPLNYL-THLLW------------LKADGNRLRSAQ-MNELPYLQIASFAYNQITD 148
LT S N+L +HL W L D N+L + + + + P + ++N +TD
Sbjct: 946 LTKNSDCNFLISHLYWNCGLESLKNLQQLILDHNQLINTKGLCDTPTIVYLDCSHNHLTD 1005
Query: 149 TEGISH-PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN---LPKLKN 204
EG+ + L+ L L+GN + + L E L+ L + L N + + + LP L+N
Sbjct: 1006 VEGVENCGLLQILKLQGNYLSELPSL--ENLVLLRELHLDDNSISTVEAFSSYWLPLLQN 1063
Query: 205 LYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTL 237
+ ++QN L K+ L +L L + N + L
Sbjct: 1064 ITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDL 1096
Score = 40.4 bits (93), Expect = 0.002
Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 66/233 (28%)
Query: 74 LEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRS------ 127
L ++ LT ++ L + L+Y+D ENH+ + N L +L + + N+L S
Sbjct: 823 LSLRRCGLTSLHSLSNCKKLKYIDAQENHIEAIECEN-LENLCVVLLNKNQLTSLHGLDG 881
Query: 128 ---AQMNELPYLQIASFAYN-----QITDTEGISH----------------------PRL 157
Q EL Y +I Y+ ++ D G H +
Sbjct: 882 CTNIQCLELSYNKITRIGYSFFLEEKLVDNAGFCHHLGTSTSYLSLAQVWIPTGLCWSWI 941
Query: 158 ETLNLKGNS------IHMVTGLDPEKLISLHTVELRGNQLESTLGI-------------- 197
+L NS H+ E L +L + L NQL +T G+
Sbjct: 942 PITSLTKNSDCNFLISHLYWNCGLESLKNLQQLILDHNQLINTKGLCDTPTIVYLDCSHN 1001
Query: 198 ---------NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFS 241
N L+ L L N L ++ LE+L L LHL DN I T+ FS
Sbjct: 1002 HLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTVEAFS 1054
Score = 35.0 bits (79), Expect = 0.086
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 72 VKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMN 131
V L+ LTD+ + + L+ + + N+L++L L L L L D N + + +
Sbjct: 994 VYLDCSHNHLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTVEAF 1053
Query: 132 E---LPYLQIASFAYNQITDTEGISH-PRLETLNLKGNSIHMVTGLDP--EKLISLHTVE 185
LP LQ + + N +T + H LE L++ N + + + SLH +
Sbjct: 1054 SSYWLPLLQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLHELS 1113
Query: 186 LRGNQL-------ESTLGINLPKLKNL---YLAQNMLKKVEGLEDLSNLTTLHLRDNQI 234
L GN L +S L + LP L+ L L N + E L + L L +QI
Sbjct: 1114 LTGNPLLQETNWRDSLLKV-LPALRILNGNILNSNSESRTEEHNQLGSAGFLALCQSQI 1171
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform 2
[Homo sapiens]
Length = 1336
Score = 45.1 bits (105), Expect = 8e-05
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 103 LTDLSPLNYL-THLLW------------LKADGNRLRSAQ-MNELPYLQIASFAYNQITD 148
LT S N+L +HL W L D N+L + + + + P + ++N +TD
Sbjct: 946 LTKNSDCNFLISHLYWNCGLESLKNLQQLILDHNQLINTKGLCDTPTIVYLDCSHNHLTD 1005
Query: 149 TEGISH-PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN---LPKLKN 204
EG+ + L+ L L+GN + + L E L+ L + L N + + + LP L+N
Sbjct: 1006 VEGVENCGLLQILKLQGNYLSELPSL--ENLVLLRELHLDDNSISTVEAFSSYWLPLLQN 1063
Query: 205 LYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTL 237
+ ++QN L K+ L +L L + N + L
Sbjct: 1064 ITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDL 1096
Score = 40.4 bits (93), Expect = 0.002
Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 66/233 (28%)
Query: 74 LEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRS------ 127
L ++ LT ++ L + L+Y+D ENH+ + N L +L + + N+L S
Sbjct: 823 LSLRRCGLTSLHSLSNCKKLKYIDAQENHIEAIECEN-LENLCVVLLNKNQLTSLHGLDG 881
Query: 128 ---AQMNELPYLQIASFAYN-----QITDTEGISH----------------------PRL 157
Q EL Y +I Y+ ++ D G H +
Sbjct: 882 CTNIQCLELSYNKITRIGYSFFLEEKLVDNAGFCHHLGTSTSYLSLAQVWIPTGLCWSWI 941
Query: 158 ETLNLKGNS------IHMVTGLDPEKLISLHTVELRGNQLESTLGI-------------- 197
+L NS H+ E L +L + L NQL +T G+
Sbjct: 942 PITSLTKNSDCNFLISHLYWNCGLESLKNLQQLILDHNQLINTKGLCDTPTIVYLDCSHN 1001
Query: 198 ---------NLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFS 241
N L+ L L N L ++ LE+L L LHL DN I T+ FS
Sbjct: 1002 HLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTVEAFS 1054
Score = 35.0 bits (79), Expect = 0.086
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 72 VKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMN 131
V L+ LTD+ + + L+ + + N+L++L L L L L D N + + +
Sbjct: 994 VYLDCSHNHLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTVEAF 1053
Query: 132 E---LPYLQIASFAYNQITDTEGISH-PRLETLNLKGNSIHMVTGLDP--EKLISLHTVE 185
LP LQ + + N +T + H LE L++ N + + + SLH +
Sbjct: 1054 SSYWLPLLQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLHELS 1113
Query: 186 LRGNQL-------ESTLGINLPKLKNL---YLAQNMLKKVEGLEDLSNLTTLHLRDNQI 234
L GN L +S L + LP L+ L L N + E L + L L +QI
Sbjct: 1114 LTGNPLLQETNWRDSLLKV-LPALRILNGNILNSNSESRTEEHNQLGSAGFLALCQSQI 1171
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 44.7 bits (104), Expect = 1e-04
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEF-PEEWLPTP 47
+EDD ED + D+DD ++E++E+E EE ED + E+F +E LP P
Sbjct: 135 EEDDKEDDDDDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDP 180
>gi|22749183 leucine rich repeat and Ig domain containing 2 [Homo
sapiens]
Length = 606
Score = 44.3 bits (103), Expect = 1e-04
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 132 ELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL 191
E L ++ + E IS+P LE ++L N I V L +L ++ L+GN+L
Sbjct: 58 ETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRL 117
Query: 192 EST-LGI--NLPKLKNLYLAQNMLKKVEG--LEDLSNLTTLHLRDNQIDTLSG------F 240
+ LG+ L L L +++N + + +DL NL +L + DN + +S
Sbjct: 118 KLVPLGVFTGLSNLTKLDISENKIVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLL 177
Query: 241 SREMKSLQYLNLRRSKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLEIH 289
S E +L+ NL T A ++ H + MPV+A K H
Sbjct: 178 SLEQLTLEKCNLTAVPTEALSHLRSLISLHLKHLNINNMPVYAFKRLFH 226
Score = 33.9 bits (76), Expect = 0.19
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 50 EDMMKEGLSLLCKTGNGLAH--AYVKLEVKERDLTD--IYLLRSYIHLRYVDISENHLTD 105
E + E +L L+H + + L +K ++ + +Y + HL++++I L D
Sbjct: 180 EQLTLEKCNLTAVPTEALSHLRSLISLHLKHLNINNMPVYAFKRLFHLKHLEIDYWPLLD 239
Query: 106 LSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGN 165
+ P N L L + + ++ +P+L Y L LNL N
Sbjct: 240 MMPAN---SLYGLNLTSLSVTNTNLSTVPFLAFKHLVY-------------LTHLNLSYN 283
Query: 166 SIHMVTG---LDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
I + D +L LH V + +E L L+ L ++QN+L+ +E
Sbjct: 284 PISTIEAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE 337
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 43.9 bits (102), Expect = 2e-04
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 136 LQIASFAYNQITDTEGISHP-RLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLEST 194
L + NQIT E I+H L LNL N + V L+ L SL + LR NQ+
Sbjct: 5 LDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNG--LDSLTELNLRHNQITFV 62
Query: 195 LGI-NLPKLKNLYLAQNMLK---KVEGLEDLSNLTTLHLRDNQIDTLSGFS----REMKS 246
+ NLP L++L+L+ N + V L D S+L+ + N I S + + M
Sbjct: 63 RDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQ 122
Query: 247 LQYLNLRR--------SKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLEIHHNLRPRICS 298
L+ L+++R + LA + ++ R SH +++ + + +L+ R+ +
Sbjct: 123 LRQLDMKRITEEERRMASVLAKKEEEKKRESHKQSLLKEKKRLTINNVARQWDLQQRVAN 182
Query: 299 V 299
+
Sbjct: 183 I 183
Score = 42.7 bits (99), Expect = 4e-04
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 180 SLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLS 238
+L ++L GNQ+ IN L +L+ L LA+N L V+ L L +LT L+LR NQI
Sbjct: 4 NLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQIT--- 60
Query: 239 GFSREMKSLQYL 250
F R++ +L L
Sbjct: 61 -FVRDVDNLPCL 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,713,259
Number of Sequences: 37866
Number of extensions: 602056
Number of successful extensions: 10218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 5272
Number of HSP's gapped (non-prelim): 3173
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.