Guide to the Human Genome
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Name: LRRC58 Sequence: fasta or formatted (371aa) NCBI GI: 153792305
Description:

leucine rich repeat containing 58

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         25           2
 C cysteine            3.2         12           2
 D aspartate           2.4          9           1
 E glutamate           7.3         27           2
 F phenylalanine       1.9          7           1
 G glycine             6.7         25           2
 H histidine           1.9          7           1
 I isoleucine          3.2         12           1
 K lysine              2.4          9           1
 L leucine            19.7         73           3
 M methionine          0.8          3           1
 N asparagine          5.7         21           2
 P proline             6.7         25           2
 Q glutamine           3.8         14           1
 R arginine            6.7         25           2
 S serine             10.2         38           2
 T threonine           3.2         12           1
 V valine              4.3         16           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 58 
MFHAS1                0.132   malignant fibrous histiocytoma amplified sequence 1...
LRDD                  0.120   leucine rich repeat and death domain containing prot...
LRDD                  0.120   leucine rich repeat and death domain containing prot...
LRRC40                0.107   leucine rich repeat containing 40 
LRRIQ4                0.106   leucine-rich repeats and IQ motif containing 4 [Hom...
LRDD                  0.101   leucine rich repeat and death domain containing prot...
SHOC2                 0.100   soc-2 suppressor of clear homolog 
LRRC47                0.099   leucine rich repeat containing 47 
LOC401387             0.097   leucine-rich repeat and death domain-containing pro...
LRRC30                0.097   leucine rich repeat containing 30 
LOC390205             0.094   leucine rich repeat containing 10-like 
PPIL5                 0.094   peptidylprolyl isomerase (cyclophilin)-like 5 isofor...
LRRC69                0.093   leucine rich repeat containing 69 
SCRIB                 0.092   scribble isoform b 
SCRIB                 0.092   scribble isoform a 
LRRC1                 0.090   leucine rich repeat containing 1 
RSU1                  0.089   ras suppressor protein 1 isoform 1 
LRRC7                 0.089   leucine rich repeat containing 7 
LRRC57                0.085   leucine rich repeat containing 57 
LRRC39                0.083   leucine rich repeat containing 39 
LRRC8D                0.082   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.082   leucine rich repeat containing 8 family, member D [H...
LRRC28                0.082   leucine rich repeat containing 28 
FLII                  0.080   flightless I homolog 
LRCH3                 0.080   leucine-rich repeats and calponin homology (CH) doma...
CNOT6L                0.079   CCR4-NOT transcription complex, subunit 6-like [Hom...
LRCH4                 0.079   leucine-rich repeats and calponin homology (CH) doma...
ERBB2IP               0.079   ERBB2 interacting protein isoform 7 
ERBB2IP               0.079   ERBB2 interacting protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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