Guide to the Human Genome
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Name: TLR2 Sequence: fasta or formatted (784aa) NCBI GI: 19718734
Description:

toll-like receptor 2

Referenced in:

Lung
Toll-like Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         28           2
 C cysteine            2.6         20           2
 D aspartate           4.8         38           2
 E glutamate           6.6         52           2
 F phenylalanine       4.8         38           1
 G glycine             3.3         26           2
 H histidine           2.6         20           1
 I isoleucine          6.0         47           2
 K lysine              6.2         49           2
 L leucine            15.4        121           3
 M methionine          2.2         17           2
 N asparagine          6.2         49           3
 P proline             3.2         25           2
 Q glutamine           3.3         26           2
 R arginine            4.1         32           2
 S serine             10.2         80           3
 T threonine           5.7         45           2
 V valine              4.8         38           1
 W tryptophan          1.8         14           1
 Y tyrosine            2.4         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   toll-like receptor 2 
TLR1                  0.210   toll-like receptor 1 
TLR6                  0.210   toll-like receptor 6 
TLR10                 0.208   toll-like receptor 10 precursor 
TLR10                 0.208   toll-like receptor 10 precursor 
TLR4                  0.106   toll-like receptor 4 precursor 
TLR8                  0.098   toll-like receptor 8 
TLR7                  0.093   toll-like receptor 7 
TLR3                  0.074   toll-like receptor 3 
TLR9                  0.067   toll-like receptor 9 isoform A precursor 
TLR5                  0.065   toll-like receptor 5 
LOC401387             0.034   leucine-rich repeat and death domain-containing pro...
LGR4                  0.033   leucine-rich repeat-containing G protein-coupled re...
LRIG2                 0.033   leucine-rich repeats and immunoglobulin-like domains ...
LGR5                  0.030   leucine-rich repeat-containing G protein-coupled rece...
LRIG1                 0.030   leucine-rich repeats and immunoglobulin-like domains...
RXFP1                 0.030   relaxin/insulin-like family peptide receptor 1 [Homo...
LINGO3                0.030   leucine rich repeat and Ig domain containing 3 [Hom...
LRRC32                0.028   leucine rich repeat containing 32 precursor 
LRRC32                0.028   leucine rich repeat containing 32 precursor 
LRIG3                 0.028   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.028   leucine-rich repeats and immunoglobulin-like domain...
LINGO1                0.028   leucine-rich repeat neuronal 6A 
LRRTM4                0.028   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.028   leucine rich repeat transmembrane neuronal 4 isofor...
DCN                   0.028   decorin isoform a preproprotein 
DCN                   0.028   decorin isoform a preproprotein 
LRRTM3                0.027   leucine rich repeat transmembrane neuronal 3 
LINGO2                0.027   leucine rich repeat and Ig domain containing 2 [Homo...
LRRC70                0.027   synleurin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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