Guide to the Human Genome
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Name: LINGO2 Sequence: fasta or formatted (606aa) NCBI GI: 22749183
Description:

leucine rich repeat and Ig domain containing 2

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         32           2
 C cysteine            2.3         14           1
 D aspartate           4.3         26           1
 E glutamate           4.8         29           2
 F phenylalanine       5.4         33           1
 G glycine             5.4         33           2
 H histidine           2.6         16           1
 I isoleucine          5.9         36           2
 K lysine              4.6         28           2
 L leucine            14.7         89           3
 M methionine          2.3         14           2
 N asparagine          6.8         41           3
 P proline             4.5         27           1
 Q glutamine           3.1         19           2
 R arginine            5.3         32           3
 S serine              7.8         47           2
 T threonine           6.1         37           2
 V valine              5.8         35           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat and Ig domain containing 2 [Homo... 
LINGO1                0.612   leucine-rich repeat neuronal 6A 
LINGO3                0.535   leucine rich repeat and Ig domain containing 3 [Hom...
LINGO4                0.363   leucine rich repeat and Ig domain containing 4 [Homo...
LRRC4B                0.130   leucine rich repeat containing 4B 
LRRC4C                0.128   netrin-G1 ligand 
LRRN3                 0.123   leucine rich repeat neuronal 3 
LRRN3                 0.123   leucine rich repeat neuronal 3 
LRRN3                 0.123   leucine rich repeat neuronal 3 
LRRC4                 0.120   leucine rich repeat containing 4 
LRRN1                 0.120   leucine rich repeat neuronal 1 
LRRN2                 0.120   leucine rich repeat neuronal 2 
LRRN2                 0.120   leucine rich repeat neuronal 2 
CPN2                  0.115   carboxypeptidase N, polypeptide 2, 83kD 
LRRC15                0.113   leucine rich repeat containing 15 isoform a 
LRRC15                0.113   leucine rich repeat containing 15 isoform b 
LRIG3                 0.108   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.108   leucine-rich repeats and immunoglobulin-like domain...
LRRC70                0.097   synleurin 
LRFN2                 0.097   leucine rich repeat and fibronectin type III domain ...
LGR4                  0.097   leucine-rich repeat-containing G protein-coupled re...
LRFN1                 0.095   leucine rich repeat and fibronectin type III domain...
LRIG2                 0.095   leucine-rich repeats and immunoglobulin-like domains ...
LRFN5                 0.094   leucine rich repeat and fibronectin type III domain ...
IGFALS                0.093   insulin-like growth factor binding protein, acid la...
IGFALS                0.093   insulin-like growth factor binding protein, acid labi...
SLIT3                 0.093   slit homolog 3 
LGR5                  0.093   leucine-rich repeat-containing G protein-coupled rece...
LRIG1                 0.092   leucine-rich repeats and immunoglobulin-like domains...
LGR6                  0.090   leucine-rich repeat-containing G protein-coupled rec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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