Guide to the Human Genome
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Name: LRRC47 Sequence: fasta or formatted (583aa) NCBI GI: 24308207
Description:

leucine rich repeat containing 47

Referenced in:

Leucine-rich Repeat Family
tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         48           4
 C cysteine            1.7         10           1
 D aspartate           4.8         28           1
 E glutamate           8.4         49           2
 F phenylalanine       1.2          7           1
 G glycine             8.2         48           3
 H histidine           1.5          9           1
 I isoleucine          1.7         10           1
 K lysine              5.8         34           2
 L leucine            16.1         94           3
 M methionine          1.0          6           1
 N asparagine          3.1         18           2
 P proline             7.7         45           2
 Q glutamine           3.8         22           1
 R arginine            8.2         48           3
 S serine              6.3         37           1
 T threonine           3.9         23           2
 V valine              6.5         38           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 47 
FARSB                 0.067   phenylalanyl-tRNA synthetase, beta subunit 
LRRC58                0.062   leucine rich repeat containing 58 
LRDD                  0.057   leucine rich repeat and death domain containing prot...
LRDD                  0.057   leucine rich repeat and death domain containing prot...
SCRIB                 0.051   scribble isoform b 
SCRIB                 0.051   scribble isoform a 
LRDD                  0.047   leucine rich repeat and death domain containing prot...
MFHAS1                0.047   malignant fibrous histiocytoma amplified sequence 1...
RSU1                  0.044   ras suppressor protein 1 isoform 1 
LGR4                  0.043   leucine-rich repeat-containing G protein-coupled re...
LRG1                  0.042   leucine-rich alpha-2-glycoprotein 1 
RSU1                  0.042   ras suppressor protein 1 isoform 2 
LRRC40                0.042   leucine rich repeat containing 40 
SHOC2                 0.041   soc-2 suppressor of clear homolog 
CHADL                 0.040   chondroadherin-like 
LRRC30                0.040   leucine rich repeat containing 30 
LOC390205             0.040   leucine rich repeat containing 10-like 
LRRC32                0.039   leucine rich repeat containing 32 precursor 
LRRC32                0.039   leucine rich repeat containing 32 precursor 
LGR6                  0.039   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.039   leucine-rich repeat-containing G protein-coupled rec...
LRIG3                 0.039   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.039   leucine-rich repeats and immunoglobulin-like domain...
LRRC10                0.037   leucine rich repeat containing 10 
CPN2                  0.037   carboxypeptidase N, polypeptide 2, 83kD 
KIAA0644              0.037   hypothetical protein LOC9865 
LRRC8E                0.037   leucine rich repeat containing 8 family, member E [H...
LOC401387             0.037   leucine-rich repeat and death domain-containing pro...
LRRC57                0.037   leucine rich repeat containing 57 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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