Guide to the Human Genome
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Name: SLITRK4 Sequence: fasta or formatted (837aa) NCBI GI: 27436867
Description:

slit and trk like 4 protein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         28           1
 C cysteine            2.3         19           1
 D aspartate           4.4         37           1
 E glutamate           5.6         47           2
 F phenylalanine       4.3         36           1
 G glycine             5.1         43           2
 H histidine           2.4         20           1
 I isoleucine          6.3         53           1
 K lysine              7.2         60           2
 L leucine            14.7        123           2
 M methionine          1.2         10           1
 N asparagine          8.0         67           3
 P proline             6.2         52           2
 Q glutamine           3.9         33           1
 R arginine            3.2         27           2
 S serine              7.5         63           2
 T threonine           4.7         39           2
 V valine              5.9         49           2
 W tryptophan          0.7          6           1
 Y tyrosine            3.0         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slit and trk like 4 protein 
SLITRK5               0.393   SLIT and NTRK-like family, member 5 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK2               0.379   SLIT and NTRK-like family, member 2 
SLITRK6               0.357   slit and trk like 6 
SLITRK3               0.337   slit and trk like 3 protein 
SLITRK1               0.308   slit and trk like 1 protein 
SLIT3                 0.070   slit homolog 3 
IGFALS                0.059   insulin-like growth factor binding protein, acid la...
IGFALS                0.059   insulin-like growth factor binding protein, acid labi...
LRRC15                0.058   leucine rich repeat containing 15 isoform a 
LRRC15                0.058   leucine rich repeat containing 15 isoform b 
SLIT1                 0.056   slit homolog 1 
FLRT2                 0.047   fibronectin leucine rich transmembrane protein 2 [Hom...
LRRTM3                0.046   leucine rich repeat transmembrane neuronal 3 
LRRC70                0.044   synleurin 
FLRT1                 0.044   fibronectin leucine rich transmembrane protein 1 [Ho...
RTN4R                 0.043   reticulon 4 receptor precursor 
CPN2                  0.043   carboxypeptidase N, polypeptide 2, 83kD 
SLIT2                 0.041   slit homolog 2 
LGR5                  0.040   leucine-rich repeat-containing G protein-coupled rece...
FLRT3                 0.040   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.040   fibronectin leucine rich transmembrane protein 3 prec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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