Guide to the Human Genome
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Name: LRGUK Sequence: fasta or formatted (825aa) NCBI GI: 21389483
Description:

leucine-rich repeats and guanylate kinase domain containing

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         46           2
 C cysteine            1.8         15           1
 D aspartate           4.8         40           2
 E glutamate           8.4         69           3
 F phenylalanine       4.0         33           2
 G glycine             5.6         46           1
 H histidine           3.4         28           2
 I isoleucine          5.6         46           1
 K lysine              5.9         49           2
 L leucine            12.1        100           2
 M methionine          2.1         17           1
 N asparagine          4.8         40           2
 P proline             5.3         44           3
 Q glutamine           4.0         33           2
 R arginine            5.3         44           2
 S serine              8.6         71           2
 T threonine           4.1         34           2
 V valine              4.1         34           2
 W tryptophan          0.6          5           1
 Y tyrosine            3.8         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeats and guanylate kinase domain con... 
LRRC23                0.071   leucine rich repeat containing 23 isoform a 
LRRC23                0.071   leucine rich repeat containing 23 isoform a 
LRRC23                0.052   leucine rich repeat containing 23 isoform b 
LRRC49                0.047   leucine rich repeat containing 49 
PPP1R7                0.042   protein phosphatase 1, regulatory subunit 7 
GUK1                  0.041   guanylate kinase 1 isoform b 
GUK1                  0.041   guanylate kinase 1 isoform a 
GUK1                  0.041   guanylate kinase 1 isoform b 
MPP5                  0.040   membrane protein, palmitoylated 5 
LRRC48                0.037   leucine rich repeat containing 48 isoform b 
LRRC48                0.037   leucine rich repeat containing 48 isoform b 
LRRC48                0.037   leucine rich repeat containing 48 isoform a 
LRRC48                0.037   leucine rich repeat containing 48 isoform a 
CEP110                0.032   centrosomal protein 110kDa 
LRRC50                0.028   leucine rich repeat containing 50 
MPP7                  0.027   palmitoylated membrane protein 7 
NISCH                 0.027   nischarin 
DLG3                  0.026   synapse-associated protein 102 isoform b 
DLG3                  0.026   synapse-associated protein 102 isoform a 
DLG1                  0.026   discs, large homolog 1 isoform 1 
DLG1                  0.026   discs, large homolog 1 isoform 2 
LOC654258             0.026   PREDICTED: similar to leucine rich repeat containin...
LRRIQ1                0.026   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.026   leucine-rich repeats and IQ motif containing 1 isof...
LRRC6                 0.026   leucine rich repeat containing 6 
DLG4                  0.025   post-synaptic density protein 95 isoform 1 
DLG4                  0.025   post-synaptic density protein 95 isoform 2 
MPP4                  0.025   membrane protein, palmitoylated 4 
LRRC40                0.025   leucine rich repeat containing 40 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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