Guide to the Human Genome
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Name: LRRC23 Sequence: fasta or formatted (343aa) NCBI GI: 206725447
Description:

leucine rich repeat containing 23 isoform a

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [343aa] leucine rich repeat containing 23 isoform a
alt prot [312aa] leucine rich repeat containing 23 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         13           1
 C cysteine            0.6          2           1
 D aspartate           7.6         26           2
 E glutamate          13.7         47           4
 F phenylalanine       1.2          4           1
 G glycine             4.4         15           1
 H histidine           2.3          8           1
 I isoleucine          3.5         12           1
 K lysine              5.8         20           2
 L leucine            17.2         59           2
 M methionine          2.6          9           2
 N asparagine          5.2         18           1
 P proline             4.4         15           1
 Q glutamine           4.1         14           1
 R arginine            5.5         19           1
 S serine              5.5         19           1
 T threonine           5.2         18           2
 V valine              2.9         10           1
 W tryptophan          0.6          2           1
 Y tyrosine            3.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 23 isoform a 
LRRC23                1.000   leucine rich repeat containing 23 isoform a 
LRRC23                0.733   leucine rich repeat containing 23 isoform b 
LRGUK                 0.178   leucine-rich repeats and guanylate kinase domain con...
LRRC49                0.103   leucine rich repeat containing 49 
PPP1R7                0.094   protein phosphatase 1, regulatory subunit 7 
CEP110                0.083   centrosomal protein 110kDa 
LOC654258             0.079   PREDICTED: similar to leucine rich repeat containin...
LRRC48                0.064   leucine rich repeat containing 48 isoform b 
LRRC48                0.064   leucine rich repeat containing 48 isoform b 
LRRC48                0.064   leucine rich repeat containing 48 isoform a 
LRRC48                0.064   leucine rich repeat containing 48 isoform a 
LRRCC1                0.062   sodium channel associated protein 2 isoform a [Homo...
C21orf2               0.058   hypothetical protein LOC755 
LRRC6                 0.056   leucine rich repeat containing 6 
NISCH                 0.053   nischarin 
SNRPA1                0.052   small nuclear ribonucleoprotein polypeptide A' [Homo...
LRRC58                0.052   leucine rich repeat containing 58 
LRTOMT                0.049   leucine rich transmembrane and 0-methyltransferase d...
DNAL1                 0.049   axonemal dynein light chain 1 
ANP32E                0.049   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
LUM                   0.047   lumican precursor 
LRRC7                 0.047   leucine rich repeat containing 7 
LRTOMT                0.046   leucine rich transmembrane and 0-methyltransferase ...
LOC401387             0.046   leucine-rich repeat and death domain-containing pro...
TBCE                  0.046   beta-tubulin cofactor E 
TBCE                  0.046   beta-tubulin cofactor E 
ANP32E                0.046   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32A                0.044   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
ANP32B                0.044   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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