Guide to the Human Genome
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Name: LRRC23 Sequence: fasta or formatted (312aa) NCBI GI: 5901898
Description:

leucine rich repeat containing 23 isoform b

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [343aa] leucine rich repeat containing 23 isoform a
alt prot [343aa] leucine rich repeat containing 23 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         12           1
 C cysteine            0.6          2           1
 D aspartate           7.1         22           2
 E glutamate          10.6         33           2
 F phenylalanine       1.6          5           1
 G glycine             5.1         16           1
 H histidine           3.8         12           2
 I isoleucine          3.8         12           1
 K lysine              5.4         17           2
 L leucine            15.7         49           2
 M methionine          2.9          9           2
 N asparagine          5.1         16           1
 P proline             4.8         15           1
 Q glutamine           3.2         10           1
 R arginine            5.8         18           2
 S serine              6.4         20           1
 T threonine           5.8         18           2
 V valine              3.2         10           1
 W tryptophan          1.6          5           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 23 isoform b 
LRRC23                0.789   leucine rich repeat containing 23 isoform a 
LRRC23                0.789   leucine rich repeat containing 23 isoform a 
LRGUK                 0.139   leucine-rich repeats and guanylate kinase domain con...
PPP1R7                0.065   protein phosphatase 1, regulatory subunit 7 
LRRC49                0.056   leucine rich repeat containing 49 
LRRCC1                0.051   sodium channel associated protein 2 isoform a [Homo...
LRRC32                0.049   leucine rich repeat containing 32 precursor 
LRRC32                0.049   leucine rich repeat containing 32 precursor 
LGR6                  0.047   leucine-rich repeat-containing G protein-coupled rec...
LRRC58                0.046   leucine rich repeat containing 58 
FLII                  0.044   flightless I homolog 
PRELP                 0.042   proline arginine-rich end leucine-rich repeat protei...
PRELP                 0.042   proline arginine-rich end leucine-rich repeat protein...
LUM                   0.042   lumican precursor 
RXFP1                 0.039   relaxin/insulin-like family peptide receptor 1 [Homo...
LOC401387             0.039   leucine-rich repeat and death domain-containing pro...
ECM2                  0.039   extracellular matrix protein 2 precursor 
TLR2                  0.039   toll-like receptor 2 
NISCH                 0.039   nischarin 
CEP110                0.036   centrosomal protein 110kDa 
SLITRK4               0.036   slit and trk like 4 protein 
LRRC46                0.034   leucine rich repeat containing 46 
LRIG1                 0.033   leucine-rich repeats and immunoglobulin-like domains...
LRRC47                0.033   leucine rich repeat containing 47 
LRRIQ1                0.033   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.033   leucine-rich repeats and IQ motif containing 1 isof...
ZBTB7C                0.033   zinc finger and BTB domain containing 7C 
LINGO2                0.031   leucine rich repeat and Ig domain containing 2 [Homo...
LOC654258             0.031   PREDICTED: similar to leucine rich repeat containin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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