Guide to the Human Genome
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Name: LRRC46 Sequence: fasta or formatted (321aa) NCBI GI: 15529980
Description:

leucine rich repeat containing 46

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         20           2
 C cysteine            1.9          6           1
 D aspartate           4.4         14           1
 E glutamate          10.6         34           2
 F phenylalanine       2.8          9           1
 G glycine             6.5         21           2
 H histidine           1.9          6           1
 I isoleucine          3.7         12           1
 K lysine              4.4         14           2
 L leucine            14.3         46           3
 M methionine          1.6          5           1
 N asparagine          3.4         11           1
 P proline             6.9         22           1
 Q glutamine           5.9         19           2
 R arginine            5.3         17           1
 S serine              9.0         29           2
 T threonine           6.9         22           2
 V valine              3.1         10           2
 W tryptophan          0.6          2           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 46 
LRRC50                0.082   leucine rich repeat containing 50 
LRRC6                 0.077   leucine rich repeat containing 6 
PPP1R7                0.062   protein phosphatase 1, regulatory subunit 7 
LRRC49                0.057   leucine rich repeat containing 49 
LRGUK                 0.051   leucine-rich repeats and guanylate kinase domain con...
LRRC48                0.049   leucine rich repeat containing 48 isoform b 
LRRC48                0.049   leucine rich repeat containing 48 isoform b 
LRRC48                0.049   leucine rich repeat containing 48 isoform a 
LRRC48                0.049   leucine rich repeat containing 48 isoform a 
LRRC23                0.047   leucine rich repeat containing 23 isoform a 
LRRC23                0.047   leucine rich repeat containing 23 isoform a 
LOC654258             0.047   PREDICTED: similar to leucine rich repeat containin...
LRIG1                 0.044   leucine-rich repeats and immunoglobulin-like domains...
LGR5                  0.042   leucine-rich repeat-containing G protein-coupled rece...
LRRC67                0.042   leucine rich repeat containing 67 
FMOD                  0.041   fibromodulin precursor 
DNAL1                 0.041   axonemal dynein light chain 1 
LRRIQ1                0.039   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.039   leucine-rich repeats and IQ motif containing 1 isof...
ANP32A                0.039   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
NISCH                 0.038   nischarin 
CEP97                 0.038   centrosomal protein 97kDa 
CEP110                0.038   centrosomal protein 110kDa 
ANP32B                0.036   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
ANP32E                0.036   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
LOC647020             0.034   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.034   PREDICTED: similar to acidic (leucine-rich) nuclear...
LRRC23                0.034   leucine rich repeat containing 23 isoform b 
C21orf2               0.034   hypothetical protein LOC755 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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