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Search of human proteins with 58218984
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58218984 single stranded DNA binding protein 4 isoform b
[Homo sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 767 0.0
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 754 0.0
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 575 e-164
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 573 e-163
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 561 e-160
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 541 e-154
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 76 4e-14
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 76 4e-14
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 76 4e-14
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 75 9e-14
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 74 2e-13
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 74 2e-13
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 73 3e-13
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 73 3e-13
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 72 6e-13
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 71 2e-12
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 69 9e-12
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 68 1e-11
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 68 1e-11
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 67 2e-11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 67 3e-11
gi|110832843 TBP-associated factor 4 [Homo sapiens] 65 9e-11
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 65 9e-11
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 65 1e-10
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 65 1e-10
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 65 1e-10
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 65 1e-10
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 64 2e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 64 2e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 64 2e-10
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 767 bits (1980), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 121 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP 180
FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
Sbjct: 121 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP 180
Query: 181 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
Sbjct: 181 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
Query: 241 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME 300
GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
Sbjct: 241 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME 300
Query: 301 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT 360
PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
Sbjct: 301 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT 360
Query: 361 MSV 363
MSV
Sbjct: 361 MSV 363
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 754 bits (1947), Expect = 0.0
Identities = 363/385 (94%), Positives = 363/385 (94%), Gaps = 22/385 (5%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 121 FFQ----------------------PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 158
FFQ PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA
Sbjct: 121 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 180
Query: 159 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR 218
MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR
Sbjct: 181 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR 240
Query: 219 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 278
GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA
Sbjct: 241 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 300
Query: 279 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 338
GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG
Sbjct: 301 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 360
Query: 339 EMAAAGTFLHPFPSESYSPGMTMSV 363
EMAAAGTFLHPFPSESYSPGMTMSV
Sbjct: 361 EMAAAGTFLHPFPSESYSPGMTMSV 385
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 575 bits (1483), Expect = e-164
Identities = 267/366 (72%), Positives = 309/366 (84%), Gaps = 8/366 (2%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
Query: 121 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP 180
FFQPFMSPR+ GGPRP +RM +QPP G+PG+QPLLP +M+P+ R QGHP+MGG MQR+ P
Sbjct: 120 FFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT-RQQGHPNMGGSMQRMNP 178
Query: 181 PRGMASV--GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPG 237
PRGM + GPQ+YG GMRPPPNSL GP +P +NMGPG PW +P S NSIPYSSSSPG
Sbjct: 179 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 237
Query: 238 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 297
+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT++NP+ G R+NFP+GPG +GPM M
Sbjct: 238 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG 297
Query: 298 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
MEPHH+NGSLGSGD+DGLPK+SP ++G+SN PGTPRDDGE+ G FLH F +++YSP
Sbjct: 298 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHSFQNDNYSP 355
Query: 358 GMTMSV 363
MTMSV
Sbjct: 356 SMTMSV 361
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 573 bits (1476), Expect = e-163
Identities = 269/365 (73%), Positives = 303/365 (83%), Gaps = 6/365 (1%)
Query: 1 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF 59
MY KG SAVPSDSQAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
Query: 60 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA 119
LHSWWCVFWDLYCAAP+RRE CEHS EAKAF DYSAAAAPSPV+G++ PGD M G +
Sbjct: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
Query: 120 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT 179
GFFQPFMSPR+PGGPRP LR+P+Q G+PGSQPLLP M+P+ R QGHP+MGGPMQR+T
Sbjct: 121 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT 179
Query: 180 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPGS 238
PPRGM +GPQ+YGG MRPP N+L GPG+P MNMGPG PW +P + NSIPYSS+SPG+
Sbjct: 180 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN 239
Query: 239 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA 298
Y GPPGGGGPPGTPIMPSP DSTNS +NMYT+MN + G R NFP+GPG +GPM +
Sbjct: 240 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG 299
Query: 299 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
ME HH+NGSLGSGDMD + K+SP ++ LSN PGTPRDDGEM G FL+PF SESYSP
Sbjct: 300 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS 356
Query: 359 MTMSV 363
MTMSV
Sbjct: 357 MTMSV 361
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 561 bits (1445), Expect = e-160
Identities = 267/393 (67%), Positives = 309/393 (78%), Gaps = 35/393 (8%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
Query: 121 FF---------------------------QPFMSPRFPGGPRPTLRMPSQPPAGLPGSQP 153
FF QPFMSPR+ GGPRP +RM +QPP G+PG+QP
Sbjct: 120 FFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP 179
Query: 154 LLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPAM 211
LLP +M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P +
Sbjct: 180 LLPNSMDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGI 237
Query: 212 NMGPGVRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 270
NMGPG PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT+
Sbjct: 238 NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 297
Query: 271 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNA 330
+NP+ G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN
Sbjct: 298 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP 357
Query: 331 PGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV 363
PGTPRDDGE+ G FLH F +++YSP MTMSV
Sbjct: 358 PGTPRDDGEL--GGNFLHSFQNDNYSPSMTMSV 388
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 541 bits (1394), Expect = e-154
Identities = 259/374 (69%), Positives = 299/374 (79%), Gaps = 17/374 (4%)
Query: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
Query: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
Query: 121 FFQ--------PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMG 172
FFQ P P P P + SQPP G+PG+QPLLP +M+P+ R QGHP+MG
Sbjct: 120 FFQGPPGSQPSPHAQPP-PHNPSSMMGPHSQPPGGVPGTQPLLPNSMDPT-RQQGHPNMG 177
Query: 173 GPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSI 229
G MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P +NMGPG PW +P S NSI
Sbjct: 178 GSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSI 236
Query: 230 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP 289
PYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT++NP+ G R+NFP+GPG
Sbjct: 237 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGS 296
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 349
+GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN PGTPRDDGE+ G FLH
Sbjct: 297 DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHS 354
Query: 350 FPSESYSPGMTMSV 363
F +++YSP MTMSV
Sbjct: 355 FQNDNYSPSMTMSV 368
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 76.3 bits (186), Expect = 4e-14
Identities = 84/275 (30%), Positives = 100/275 (36%), Gaps = 41/275 (14%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQPFMSPRFPGGP-RPTLRMPSQP-PAGLPGSQPLL 155
P P PG A G+ G P P FPG P +P P P GLPG +
Sbjct: 712 PGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFK--- 768
Query: 156 PGAMEPSPRAQGHPSMGGPMQR-----VTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPA 210
GA+ P +G P GP R + P+G VGP G M PP L G G+
Sbjct: 769 -GALGPKGD-RGFPGPPGPPGRTGLDGLPGPKG--DVGPNGQPGPMGPP--GLPGIGVQG 822
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPG----SYTGPPGGGGPPGTPIMPSPGDSTNSSEN 266
PG+ GP P + IP PG GPPG G PG P P P
Sbjct: 823 PPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGP--------- 873
Query: 267 MYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 324
+ P G G+A PG +G M M P G G + GL
Sbjct: 874 ----IGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDD---- 925
Query: 325 AGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
GL PG P GE + G P P P +
Sbjct: 926 -GLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL 959
Score = 72.8 bits (177), Expect = 5e-13
Identities = 70/227 (30%), Positives = 88/227 (38%), Gaps = 33/227 (14%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP----SPRAQGHPSMGGPMQRVTPPRGMAS 186
PG P PT S+ GLPG PG M+P S +G P + G + V+ P+G
Sbjct: 931 PGLPGPTGEKGSKGEPGLPGP----PGPMDPNLLGSKGEKGEPGLPG-IPGVSGPKGYQG 985
Query: 187 V----GPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
+ G G G+ PP PGLP PG+ GP G P
Sbjct: 986 LPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQ---PGLIGP-PGLKGTIGDMGFPGPQGVE 1041
Query: 241 GPPGGGGPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
GPPG G PG P P PG + + G P PGP+G
Sbjct: 1042 GPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGLPGPKGEPGLPGYP 1091
Query: 300 EPHHVNGSLGSGDMDGLPKSSPGAVA--GLSNAPGTPRDDGEMAAAG 344
+ GS+G + GLP +PGA GL PGTP G +G
Sbjct: 1092 GNPGIKGSVGDPGLPGLP-GTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Score = 70.5 bits (171), Expect = 2e-12
Identities = 76/236 (32%), Positives = 86/236 (36%), Gaps = 20/236 (8%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSP-RAQGHPSMGGPMQRVTPPRGMAS 186
P FPG P P P G PG LPG EP P GHP GP P
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPG----LPG--EPGPVGGGGHPGQPGPPGEKGKPGQDGI 1174
Query: 187 VGPQSYGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 245
GP G P GP GLP ++ G G P +P PG + G PG
Sbjct: 1175 PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPG-FHGFPGV 1233
Query: 246 GGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVN 305
GPPG P SPG + + P G+ G F PGPEGP
Sbjct: 1234 QGPPGPP--GSPGPALEGPKGNPGPQGPPGR-PGPTGFQGLPGPEGPPGLPGNGGIKGEK 1290
Query: 306 GSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
G+ G + GLP K G GL PG P +G G P PGM
Sbjct: 1291 GNPGQPGLPGLPGLKGDQGP-PGLQGNPGRPGLNGMKGDPG-----LPGVPGFPGM 1340
Score = 62.0 bits (149), Expect = 8e-10
Identities = 65/208 (31%), Positives = 78/208 (37%), Gaps = 25/208 (12%)
Query: 147 GLPGSQPLLPGAMEPS--PRAQGHPSMGGPMQRVT--PPRGMASVGPQSYGGGMRPPPNS 202
GLPG LPG P QG P + GP PP G + G PP S
Sbjct: 362 GLPG----LPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS 417
Query: 203 LAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDS 260
+ GP GL PG+ GP P+G IP P PG GPPG+P G+
Sbjct: 418 IPGPPGLDGQPGAPGLPGP-PGPAGPHIP-----PSDEICEPGPPGPPGSPGDKGLQGEQ 471
Query: 261 TNSSENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS 319
+ T N IG G +G P PG GP ++ G G+ GLP
Sbjct: 472 GVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLP-- 529
Query: 320 SPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
G+ APG P G G L
Sbjct: 530 ------GIPGAPGAPGFPGSKGEPGDIL 551
Score = 60.8 bits (146), Expect = 2e-09
Identities = 71/243 (29%), Positives = 88/243 (36%), Gaps = 37/243 (15%)
Query: 125 FMSPRFPGGPRPTLR---MPSQP-------PAGLPG--SQPLLPG--AMEPSPRAQGHPS 170
F P P GPR +P P P GLPG P LPG + +P QG P
Sbjct: 64 FPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPG 123
Query: 171 MGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPS 225
G P G Q G GM+ P S+ LP PG GP P
Sbjct: 124 CNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGP---PG 180
Query: 226 GNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF 283
+P + PG GPPG GPPG P +P P + P G+ G
Sbjct: 181 IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG-----LNFQGPKGE-KGEQGL 234
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTP-RDDGEMA 341
PGP G ++ + ++ GD GLP P G+ PG P + GE
Sbjct: 235 QGPPGPPGQISE----QKRPIDVEFQKGD-QGLPGDRGPPGPPGIRGPPGPPGGEKGEKG 289
Query: 342 AAG 344
G
Sbjct: 290 EQG 292
Score = 59.7 bits (143), Expect = 4e-09
Identities = 75/247 (30%), Positives = 86/247 (34%), Gaps = 48/247 (19%)
Query: 128 PRFPGGPRPTLRMPS-----QPPAGLPGSQPLLPGAMEPSPRAQGHPSM----------G 172
P PG P P L P Q P G PG P + P +G P + G
Sbjct: 1237 PGPPGSPGPALEGPKGNPGPQGPPGRPG-----PTGFQGLPGPEGPPGLPGNGGIKGEKG 1291
Query: 173 GPMQRVTP--PRGMASVGPQSYGGGM-RPPPNSLAG-PGLPAMNMGPGVRGPWASPSGNS 228
P Q P P GP G RP N + G PGLP + PG++GP P
Sbjct: 1292 NPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG--- 1348
Query: 229 IPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLG 286
S+ P G PG GPPG P +P P S I G G+
Sbjct: 1349 ----SAGP---EGEPGLIGPPGPPGLPGP------SGQSIIIKGDAGPPGIPGQPGLKGL 1395
Query: 287 PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--PKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
PGP+GP P G G DG K P GL PGT DG G
Sbjct: 1396 PGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDP----GLPGQPGTRGLDGPPGPDG 1451
Query: 345 TFLHPFP 351
P P
Sbjct: 1452 LQGPPGP 1458
Score = 58.9 bits (141), Expect = 7e-09
Identities = 66/224 (29%), Positives = 86/224 (38%), Gaps = 23/224 (10%)
Query: 125 FMSPRFPGGPRPTLRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG 183
F P+ GP +P QP + GLPG + +P + G P + GP P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSPGLPGQKG---DKGDPGISSIGLPGLPGPKGEPGLPGY 1090
Query: 184 MASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS 238
+ G + G G+ P + PGLP PG GP P G S P +
Sbjct: 1091 PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGF---PGTPGP-PGPKGISGPPGNPGLPG 1146
Query: 239 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAM 296
GP GGGG PG P PG+ ++ I P GQ G+ F PGP G
Sbjct: 1147 EPGPVGGGGHPGQP--GPPGEKGKPGQD--GIPGPAGQKGEPGQPGFG-NPGPPGLPGLS 1201
Query: 297 SAMEPHHVNGSLGSGDMDGLPKSSPG--AVAGLSNAPGTPRDDG 338
+ G G+ + G PK PG G+ PG P G
Sbjct: 1202 GQKGDGGLPGIPGNPGLPG-PKGEPGFHGFPGVQGPPGPPGSPG 1244
Score = 58.5 bits (140), Expect = 9e-09
Identities = 62/222 (27%), Positives = 74/222 (33%), Gaps = 21/222 (9%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P PG P + P PP G PG + P G P + G P
Sbjct: 382 PGLPGPPGAAVMGPPGPP-GFPGERGQKGDEGPPGISIPGPPGLDGQ------PGAPGLP 434
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGPG---------VRGPWASPSGNSIPYSSSSPGS 238
GP G PP + + PG P PG V+G N I S P
Sbjct: 435 GPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPG 494
Query: 239 YTGPPGGGGPPGTPIMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 297
G PG GPPG+ P G+ + + I G FP G G +
Sbjct: 495 QPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFP 554
Query: 298 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGE 339
M+ G LGS GLP PG G PG P GE
Sbjct: 555 GMKGD--KGELGSPGAPGLP-GLPG-TPGQDGLPGLPGPKGE 592
Score = 57.4 bits (137), Expect = 2e-08
Identities = 77/263 (29%), Positives = 95/263 (36%), Gaps = 58/263 (22%)
Query: 130 FPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
FPG G + L P P GLPG LPG +P G P + GP P G+
Sbjct: 553 FPGMKGDKGELGSPGAP--GLPG----LPG----TPGQDGLPGLPGPKGE---PGGITFK 599
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGP---------------GVRGPWASPSGNSIPYS 232
G R PP + PGLP N+GP G++G +P IP
Sbjct: 600 GE-------RGPPGNPGLPGLPG-NIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGP 651
Query: 233 SSSPGSYTGPPGGGGPPGTP----IMPSPGDSTNSSENMYTIMNPIGQGAGRANFP-LG- 286
PG PG G PG P + PGD + + I G P +G
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ---PGLPGIPGSKGEPGIPGIGL 708
Query: 287 PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG-AVAGLSNAPGTPRDD 337
PGP GP P G+ G ++G PK PG A+ G PG P
Sbjct: 709 PGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFK 768
Query: 338 GEMAAAGTFLHPFPSESYSPGMT 360
G + G FP PG T
Sbjct: 769 GALGPKGD--RGFPGPPGPPGRT 789
Score = 53.1 bits (126), Expect = 4e-07
Identities = 87/327 (26%), Positives = 105/327 (32%), Gaps = 103/327 (31%)
Query: 130 FPGGPR-PTLRMPSQPPAGLPGSQPLLPGA--MEPSPRAQGHPSMGGP--MQRVTPPRGM 184
FPG P P L+ P PP G+PG + PG+ M P +G+P GP +Q + P G+
Sbjct: 133 FPGSPGFPGLQGPPGPP-GIPGMKGE-PGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGI 190
Query: 185 AS-VGPQSYGGGMRPP-PNSLAGP------------------------------------ 206
+GP G M PP P L GP
Sbjct: 191 PGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP 250
Query: 207 ----------GLPAMNMGP----GVRGPWASPSGN------------------------- 227
GLP + GP G+RGP P G
Sbjct: 251 IDVEFQKGDQGLPG-DRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQP 309
Query: 228 SIPYSSSSPGSYTGPP---------GGGGPPGTP--IMPSPGDSTNSSENMYTIMNPIGQ 276
IP PG Y G P G GPPG P ++P PG E + +
Sbjct: 310 GIPGLPGDPG-YPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 277 GAGRANFPLGPGPEG-----PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAP 331
G FP GP G A M P G G +G P S GL P
Sbjct: 369 EKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 332 GTPRDDGEMAAAGTFLHPFPSESYSPG 358
G P G AG + P E PG
Sbjct: 429 GAPGLPGPPGPAGPHIPP-SDEICEPG 454
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
G R P PGLP G GP + IP P GPPG G PGTP +
Sbjct: 48 GERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP-GPPGPKGIRGPPGLPGFPGTPGL 106
Query: 255 PS-PG-DSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 310
P PG D + + G+ G FP GP GP + G GS
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG------MKGEPGS 160
Query: 311 GDMDGL--PKSSPG-----AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
M L PK +PG + GL G P G G P P
Sbjct: 161 IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGP 208
Score = 39.7 bits (91), Expect = 0.004
Identities = 41/130 (31%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPG--SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P FPG P+ S P G PG P PG PS ++ GP P
Sbjct: 1335 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1394
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 245
GPQ G + P PG P N PG G +P + G GPPG
Sbjct: 1395 LPGPQ----GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG-LDGPPGP 1449
Query: 246 GG---PPGTP 252
G PPG P
Sbjct: 1450 DGLQGPPGPP 1459
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 76.3 bits (186), Expect = 4e-14
Identities = 84/275 (30%), Positives = 100/275 (36%), Gaps = 41/275 (14%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQPFMSPRFPGGP-RPTLRMPSQP-PAGLPGSQPLL 155
P P PG A G+ G P P FPG P +P P P GLPG +
Sbjct: 712 PGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFK--- 768
Query: 156 PGAMEPSPRAQGHPSMGGPMQR-----VTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPA 210
GA+ P +G P GP R + P+G VGP G M PP L G G+
Sbjct: 769 -GALGPKGD-RGFPGPPGPPGRTGLDGLPGPKG--DVGPNGQPGPMGPP--GLPGIGVQG 822
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPG----SYTGPPGGGGPPGTPIMPSPGDSTNSSEN 266
PG+ GP P + IP PG GPPG G PG P P P
Sbjct: 823 PPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGP--------- 873
Query: 267 MYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 324
+ P G G+A PG +G M M P G G + GL
Sbjct: 874 ----IGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDD---- 925
Query: 325 AGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
GL PG P GE + G P P P +
Sbjct: 926 -GLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL 959
Score = 72.8 bits (177), Expect = 5e-13
Identities = 75/250 (30%), Positives = 95/250 (38%), Gaps = 32/250 (12%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP----SPRAQGHPSMGGPMQRVTPPRGMAS 186
PG P PT S+ GLPG PG M+P S +G P + G + V+ P+G
Sbjct: 931 PGLPGPTGEKGSKGEPGLPGP----PGPMDPNLLGSKGEKGEPGLPG-IPGVSGPKGYQG 985
Query: 187 V----GPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
+ G G G+ PP PGLP PG+ GP G P
Sbjct: 986 LPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQ---PGLIGP-PGLKGTIGDMGFPGPQGVE 1041
Query: 241 GPPGGGGPPGTPIMPS-------PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPM 293
GPPG G PG P P GD SS + + P G+ G +P PG +G +
Sbjct: 1042 GPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGE-PGLPGYPGNPGIKGSV 1100
Query: 294 AAMSAMEPHHVNGSLGSGDMDGLPKS-SPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF-- 350
G+ G + G P + P G+S PG P GE G HP
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 351 --PSESYSPG 358
P E PG
Sbjct: 1161 GPPGEKGKPG 1170
Score = 65.5 bits (158), Expect = 7e-11
Identities = 69/241 (28%), Positives = 81/241 (33%), Gaps = 40/241 (16%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSP-RAQGHPSMGGPMQRVTPPRGMAS 186
P FPG P P P G PG LPG EP P GHP GP P
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPG----LPG--EPGPVGGGGHPGQPGPPGEKGKPGQDGI 1174
Query: 187 VGPQSYGGGMRPPPNSLAGP-------------GLPAMNMGPGVRGPWASPSGNSIPYSS 233
GP G P GP GLP + PG+ GP P + P
Sbjct: 1175 PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQ 1234
Query: 234 SSPGSYTGP----------PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF 283
PG P PG GPPG P +P P N G G
Sbjct: 1235 GPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGN--------GGIKGEKGN 1286
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAA 343
P PG G P + G+ G ++G+ K PG + G+ PG G +A
Sbjct: 1287 PGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM-KGDPG-LPGVPGFPGMKGPSGVPGSA 1344
Query: 344 G 344
G
Sbjct: 1345 G 1345
Score = 62.0 bits (149), Expect = 8e-10
Identities = 65/208 (31%), Positives = 78/208 (37%), Gaps = 25/208 (12%)
Query: 147 GLPGSQPLLPGAMEPS--PRAQGHPSMGGPMQRVT--PPRGMASVGPQSYGGGMRPPPNS 202
GLPG LPG P QG P + GP PP G + G PP S
Sbjct: 362 GLPG----LPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS 417
Query: 203 LAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDS 260
+ GP GL PG+ GP P+G IP P PG GPPG+P G+
Sbjct: 418 IPGPPGLDGQPGAPGLPGP-PGPAGPHIP-----PSDEICEPGPPGPPGSPGDKGLQGEQ 471
Query: 261 TNSSENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS 319
+ T N IG G +G P PG GP ++ G G+ GLP
Sbjct: 472 GVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLP-- 529
Query: 320 SPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
G+ APG P G G L
Sbjct: 530 ------GIPGAPGAPGFPGSKGEPGDIL 551
Score = 61.6 bits (148), Expect = 1e-09
Identities = 77/238 (32%), Positives = 89/238 (37%), Gaps = 36/238 (15%)
Query: 128 PRFPGGPRPTLRMP--SQPPAGLPGSQPLLPGAMEPSPRAQGHPSM----GGPMQRVTP- 180
P PG P P L P + P G PG +P LPG P P G+ + G P Q P
Sbjct: 1237 PGPPGSPGPALEGPKGNPGPQGPPG-RPGLPGPEGP-PGLPGNGGIKGEKGNPGQPGLPG 1294
Query: 181 -PRGMASVGPQSYGGGM-RPPPNSLAG-PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
P GP G RP N + G PGLP + PG++GP P S+ P
Sbjct: 1295 LPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG-------SAGP- 1346
Query: 238 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAA 295
G PG GPPG P +P P S I G G+ PGP+GP
Sbjct: 1347 --EGEPGLIGPPGPPGLPGP------SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGL 1398
Query: 296 MSAMEPHHVNGSLGSGDMDGL--PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
P G G DG K P GL PGT DG G P P
Sbjct: 1399 PGPTGPPGDPGRNGLPGFDGAGGRKGDP----GLPGQPGTRGLDGPPGPDGLQGPPGP 1452
Score = 60.8 bits (146), Expect = 2e-09
Identities = 71/243 (29%), Positives = 88/243 (36%), Gaps = 37/243 (15%)
Query: 125 FMSPRFPGGPRPTLR---MPSQP-------PAGLPG--SQPLLPG--AMEPSPRAQGHPS 170
F P P GPR +P P P GLPG P LPG + +P QG P
Sbjct: 64 FPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPG 123
Query: 171 MGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPS 225
G P G Q G GM+ P S+ LP PG GP P
Sbjct: 124 CNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGP---PG 180
Query: 226 GNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF 283
+P + PG GPPG GPPG P +P P + P G+ G
Sbjct: 181 IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG-----LNFQGPKGE-KGEQGL 234
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTP-RDDGEMA 341
PGP G ++ + ++ GD GLP P G+ PG P + GE
Sbjct: 235 QGPPGPPGQISE----QKRPIDVEFQKGD-QGLPGDRGPPGPPGIRGPPGPPGGEKGEKG 289
Query: 342 AAG 344
G
Sbjct: 290 EQG 292
Score = 58.9 bits (141), Expect = 7e-09
Identities = 66/224 (29%), Positives = 86/224 (38%), Gaps = 23/224 (10%)
Query: 125 FMSPRFPGGPRPTLRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG 183
F P+ GP +P QP + GLPG + +P + G P + GP P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSPGLPGQKG---DKGDPGISSIGLPGLPGPKGEPGLPGY 1090
Query: 184 MASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS 238
+ G + G G+ P + PGLP PG GP P G S P +
Sbjct: 1091 PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGF---PGTPGP-PGPKGISGPPGNPGLPG 1146
Query: 239 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAM 296
GP GGGG PG P PG+ ++ I P GQ G+ F PGP G
Sbjct: 1147 EPGPVGGGGHPGQP--GPPGEKGKPGQD--GIPGPAGQKGEPGQPGFG-NPGPPGLPGLS 1201
Query: 297 SAMEPHHVNGSLGSGDMDGLPKSSPG--AVAGLSNAPGTPRDDG 338
+ G G+ + G PK PG G+ PG P G
Sbjct: 1202 GQKGDGGLPGIPGNPGLPG-PKGEPGFHGFPGVQGPPGPPGSPG 1244
Score = 58.5 bits (140), Expect = 9e-09
Identities = 62/222 (27%), Positives = 74/222 (33%), Gaps = 21/222 (9%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P PG P + P PP G PG + P G P + G P
Sbjct: 382 PGLPGPPGAAVMGPPGPP-GFPGERGQKGDEGPPGISIPGPPGLDGQ------PGAPGLP 434
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGPG---------VRGPWASPSGNSIPYSSSSPGS 238
GP G PP + + PG P PG V+G N I S P
Sbjct: 435 GPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPG 494
Query: 239 YTGPPGGGGPPGTPIMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 297
G PG GPPG+ P G+ + + I G FP G G +
Sbjct: 495 QPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFP 554
Query: 298 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGE 339
M+ G LGS GLP PG G PG P GE
Sbjct: 555 GMKGD--KGELGSPGAPGLP-GLPG-TPGQDGLPGLPGPKGE 592
Score = 57.4 bits (137), Expect = 2e-08
Identities = 77/263 (29%), Positives = 95/263 (36%), Gaps = 58/263 (22%)
Query: 130 FPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
FPG G + L P P GLPG LPG +P G P + GP P G+
Sbjct: 553 FPGMKGDKGELGSPGAP--GLPG----LPG----TPGQDGLPGLPGPKGE---PGGITFK 599
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGP---------------GVRGPWASPSGNSIPYS 232
G R PP + PGLP N+GP G++G +P IP
Sbjct: 600 GE-------RGPPGNPGLPGLPG-NIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGP 651
Query: 233 SSSPGSYTGPPGGGGPPGTP----IMPSPGDSTNSSENMYTIMNPIGQGAGRANFP-LG- 286
PG PG G PG P + PGD + + I G P +G
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ---PGLPGIPGSKGEPGIPGIGL 708
Query: 287 PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG-AVAGLSNAPGTPRDD 337
PGP GP P G+ G ++G PK PG A+ G PG P
Sbjct: 709 PGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFK 768
Query: 338 GEMAAAGTFLHPFPSESYSPGMT 360
G + G FP PG T
Sbjct: 769 GALGPKGD--RGFPGPPGPPGRT 789
Score = 53.1 bits (126), Expect = 4e-07
Identities = 87/327 (26%), Positives = 105/327 (32%), Gaps = 103/327 (31%)
Query: 130 FPGGPR-PTLRMPSQPPAGLPGSQPLLPGA--MEPSPRAQGHPSMGGP--MQRVTPPRGM 184
FPG P P L+ P PP G+PG + PG+ M P +G+P GP +Q + P G+
Sbjct: 133 FPGSPGFPGLQGPPGPP-GIPGMKGE-PGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGI 190
Query: 185 AS-VGPQSYGGGMRPP-PNSLAGP------------------------------------ 206
+GP G M PP P L GP
Sbjct: 191 PGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP 250
Query: 207 ----------GLPAMNMGP----GVRGPWASPSGN------------------------- 227
GLP + GP G+RGP P G
Sbjct: 251 IDVEFQKGDQGLPG-DRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQP 309
Query: 228 SIPYSSSSPGSYTGPP---------GGGGPPGTP--IMPSPGDSTNSSENMYTIMNPIGQ 276
IP PG Y G P G GPPG P ++P PG E + +
Sbjct: 310 GIPGLPGDPG-YPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 277 GAGRANFPLGPGPEG-----PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAP 331
G FP GP G A M P G G +G P S GL P
Sbjct: 369 EKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 332 GTPRDDGEMAAAGTFLHPFPSESYSPG 358
G P G AG + P E PG
Sbjct: 429 GAPGLPGPPGPAGPHIPP-SDEICEPG 454
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
G R P PGLP G GP + IP P GPPG G PGTP +
Sbjct: 48 GERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP-GPPGPKGIRGPPGLPGFPGTPGL 106
Query: 255 PS-PG-DSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 310
P PG D + + G+ G FP GP GP + G GS
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG------MKGEPGS 160
Query: 311 GDMDGL--PKSSPG-----AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
M L PK +PG + GL G P G G P P
Sbjct: 161 IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGP 208
Score = 39.7 bits (91), Expect = 0.004
Identities = 41/130 (31%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPG--SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P FPG P+ S P G PG P PG PS ++ GP P
Sbjct: 1329 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1388
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 245
GPQ G + P PG P N PG G +P + G GPPG
Sbjct: 1389 LPGPQ----GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG-LDGPPGP 1443
Query: 246 GG---PPGTP 252
G PPG P
Sbjct: 1444 DGLQGPPGPP 1453
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 76.3 bits (186), Expect = 4e-14
Identities = 84/275 (30%), Positives = 100/275 (36%), Gaps = 41/275 (14%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQPFMSPRFPGGP-RPTLRMPSQP-PAGLPGSQPLL 155
P P PG A G+ G P P FPG P +P P P GLPG +
Sbjct: 712 PGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFK--- 768
Query: 156 PGAMEPSPRAQGHPSMGGPMQR-----VTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPA 210
GA+ P +G P GP R + P+G VGP G M PP L G G+
Sbjct: 769 -GALGPKGD-RGFPGPPGPPGRTGLDGLPGPKG--DVGPNGQPGPMGPP--GLPGIGVQG 822
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPG----SYTGPPGGGGPPGTPIMPSPGDSTNSSEN 266
PG+ GP P + IP PG GPPG G PG P P P
Sbjct: 823 PPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGP--------- 873
Query: 267 MYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 324
+ P G G+A PG +G M M P G G + GL
Sbjct: 874 ----IGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDD---- 925
Query: 325 AGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
GL PG P GE + G P P P +
Sbjct: 926 -GLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL 959
Score = 72.8 bits (177), Expect = 5e-13
Identities = 70/227 (30%), Positives = 88/227 (38%), Gaps = 33/227 (14%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEP----SPRAQGHPSMGGPMQRVTPPRGMAS 186
PG P PT S+ GLPG PG M+P S +G P + G + V+ P+G
Sbjct: 931 PGLPGPTGEKGSKGEPGLPGP----PGPMDPNLLGSKGEKGEPGLPG-IPGVSGPKGYQG 985
Query: 187 V----GPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
+ G G G+ PP PGLP PG+ GP G P
Sbjct: 986 LPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQ---PGLIGP-PGLKGTIGDMGFPGPQGVE 1041
Query: 241 GPPGGGGPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
GPPG G PG P P PG + + G P PGP+G
Sbjct: 1042 GPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGLPGPKGEPGLPGYP 1091
Query: 300 EPHHVNGSLGSGDMDGLPKSSPGAVA--GLSNAPGTPRDDGEMAAAG 344
+ GS+G + GLP +PGA GL PGTP G +G
Sbjct: 1092 GNPGIKGSVGDPGLPGLP-GTPGAKGQPGLPGFPGTPGPPGPKGISG 1137
Score = 62.0 bits (149), Expect = 8e-10
Identities = 65/208 (31%), Positives = 78/208 (37%), Gaps = 25/208 (12%)
Query: 147 GLPGSQPLLPGAMEPS--PRAQGHPSMGGPMQRVT--PPRGMASVGPQSYGGGMRPPPNS 202
GLPG LPG P QG P + GP PP G + G PP S
Sbjct: 362 GLPG----LPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGIS 417
Query: 203 LAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDS 260
+ GP GL PG+ GP P+G IP P PG GPPG+P G+
Sbjct: 418 IPGPPGLDGQPGAPGLPGP-PGPAGPHIP-----PSDEICEPGPPGPPGSPGDKGLQGEQ 471
Query: 261 TNSSENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS 319
+ T N IG G +G P PG GP ++ G G+ GLP
Sbjct: 472 GVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLP-- 529
Query: 320 SPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
G+ APG P G G L
Sbjct: 530 ------GIPGAPGAPGFPGSKGEPGDIL 551
Score = 61.6 bits (148), Expect = 1e-09
Identities = 78/241 (32%), Positives = 88/241 (36%), Gaps = 39/241 (16%)
Query: 128 PRFPGGPRPTLRMPS-----QPPAGLPGSQPLLPGAMEPSPRAQGHPSM----GGPMQRV 178
P PG P P L P Q P G PG Q L PG P P G+ + G P Q
Sbjct: 1237 PGPPGSPGPALEGPKGNPGPQGPPGRPGFQGL-PGPEGP-PGLPGNGGIKGEKGNPGQPG 1294
Query: 179 TP--PRGMASVGPQSYGGGM-RPPPNSLAG-PGLPAMNMGPGVRGPWASPSGNSIPYSSS 234
P P GP G RP N + G PGLP + PG++GP P S+
Sbjct: 1295 LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPG-------SA 1347
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGP 292
P G PG GPPG P +P P S I G G+ PGP+GP
Sbjct: 1348 GP---EGEPGLIGPPGPPGLPGP------SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP 1398
Query: 293 MAAMSAMEPHHVNGSLGSGDMDGL--PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 350
P G G DG K P GL PGT DG G P
Sbjct: 1399 QGLPGPTGPPGDPGRNGLPGFDGAGGRKGDP----GLPGQPGTRGLDGPPGPDGLQGPPG 1454
Query: 351 P 351
P
Sbjct: 1455 P 1455
Score = 61.2 bits (147), Expect = 1e-09
Identities = 76/283 (26%), Positives = 99/283 (34%), Gaps = 68/283 (24%)
Query: 128 PRFPG--GPRPTLRMPSQPPAGLPG--SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRG 183
P PG GP+ +P P G PG QP LPG P +G+P + G + PP
Sbjct: 972 PGIPGVSGPKGYQGLPGDP--GQPGLSGQPGLPGP----PGPKGNPGLPGQPGLIGPPGL 1025
Query: 184 MASVGPQSYGG--GMRPPPN-------------------------------SLAGP---- 206
++G + G G+ PP L GP
Sbjct: 1026 KGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEP 1085
Query: 207 GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSEN 266
GLP PG++G P +P +PG+ G PG G PGTP P P + N
Sbjct: 1086 GLPGYPGNPGIKGSVGDP---GLPGLPGTPGA-KGQPGLPGFPGTPGPPGPKGISGPPGN 1141
Query: 267 --MYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG-----SLGSGDMDGLP-- 317
+ P+G G G P PG +G P G G+ GLP
Sbjct: 1142 PGLPGEPGPVG-GGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200
Query: 318 --KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
+ G + G+ PG P GE H FP PG
Sbjct: 1201 SGQKGDGGLPGIPGNPGLPGPKGEPG-----FHGFPGVQGPPG 1238
Score = 60.8 bits (146), Expect = 2e-09
Identities = 71/243 (29%), Positives = 88/243 (36%), Gaps = 37/243 (15%)
Query: 125 FMSPRFPGGPRPTLR---MPSQP-------PAGLPG--SQPLLPG--AMEPSPRAQGHPS 170
F P P GPR +P P P GLPG P LPG + +P QG P
Sbjct: 64 FPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPG 123
Query: 171 MGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWASPS 225
G P G Q G GM+ P S+ LP PG GP P
Sbjct: 124 CNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGP---PG 180
Query: 226 GNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF 283
+P + PG GPPG GPPG P +P P + P G+ G
Sbjct: 181 IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG-----LNFQGPKGE-KGEQGL 234
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTP-RDDGEMA 341
PGP G ++ + ++ GD GLP P G+ PG P + GE
Sbjct: 235 QGPPGPPGQISE----QKRPIDVEFQKGD-QGLPGDRGPPGPPGIRGPPGPPGGEKGEKG 289
Query: 342 AAG 344
G
Sbjct: 290 EQG 292
Score = 59.3 bits (142), Expect = 5e-09
Identities = 76/256 (29%), Positives = 92/256 (35%), Gaps = 58/256 (22%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSP-RAQGHPSMGGPM----------- 175
P FPG P P P G PG LPG EP P GHP GP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPG----LPG--EPGPVGGGGHPGQPGPPGEKGKPGQDGI 1174
Query: 176 -----QRVTP---------PRGMASVGPQSYGGGMRPPPNS--LAGP-GLPAMNMGPGVR 218
Q+ P P G+ + Q GG+ P + L GP G P + PGV+
Sbjct: 1175 PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQ 1234
Query: 219 GP----------WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMY 268
GP P GN P + G PG GPPG PG+ E
Sbjct: 1235 GPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGL-----PGNGGIKGEK-- 1287
Query: 269 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 328
NP GQ G P G +GP +NG G + G+P PG + G S
Sbjct: 1288 --GNP-GQ-PGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVP-GFPG-MKGPS 1341
Query: 329 NAPGTPRDDGEMAAAG 344
PG+ +GE G
Sbjct: 1342 GVPGSAGPEGEPGLIG 1357
Score = 58.5 bits (140), Expect = 9e-09
Identities = 62/222 (27%), Positives = 74/222 (33%), Gaps = 21/222 (9%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P PG P + P PP G PG + P G P + G P
Sbjct: 382 PGLPGPPGAAVMGPPGPP-GFPGERGQKGDEGPPGISIPGPPGLDGQ------PGAPGLP 434
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGPG---------VRGPWASPSGNSIPYSSSSPGS 238
GP G PP + + PG P PG V+G N I S P
Sbjct: 435 GPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPG 494
Query: 239 YTGPPGGGGPPGTPIMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 297
G PG GPPG+ P G+ + + I G FP G G +
Sbjct: 495 QPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFP 554
Query: 298 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGE 339
M+ G LGS GLP PG G PG P GE
Sbjct: 555 GMKGD--KGELGSPGAPGLP-GLPG-TPGQDGLPGLPGPKGE 592
Score = 57.4 bits (137), Expect = 2e-08
Identities = 77/263 (29%), Positives = 95/263 (36%), Gaps = 58/263 (22%)
Query: 130 FPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
FPG G + L P P GLPG LPG +P G P + GP P G+
Sbjct: 553 FPGMKGDKGELGSPGAP--GLPG----LPG----TPGQDGLPGLPGPKGE---PGGITFK 599
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGP---------------GVRGPWASPSGNSIPYS 232
G R PP + PGLP N+GP G++G +P IP
Sbjct: 600 GE-------RGPPGNPGLPGLPG-NIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGP 651
Query: 233 SSSPGSYTGPPGGGGPPGTP----IMPSPGDSTNSSENMYTIMNPIGQGAGRANFP-LG- 286
PG PG G PG P + PGD + + I G P +G
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ---PGLPGIPGSKGEPGIPGIGL 708
Query: 287 PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG-AVAGLSNAPGTPRDD 337
PGP GP P G+ G ++G PK PG A+ G PG P
Sbjct: 709 PGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFK 768
Query: 338 GEMAAAGTFLHPFPSESYSPGMT 360
G + G FP PG T
Sbjct: 769 GALGPKGD--RGFPGPPGPPGRT 789
Score = 53.1 bits (126), Expect = 4e-07
Identities = 87/327 (26%), Positives = 105/327 (32%), Gaps = 103/327 (31%)
Query: 130 FPGGPR-PTLRMPSQPPAGLPGSQPLLPGA--MEPSPRAQGHPSMGGP--MQRVTPPRGM 184
FPG P P L+ P PP G+PG + PG+ M P +G+P GP +Q + P G+
Sbjct: 133 FPGSPGFPGLQGPPGPP-GIPGMKGE-PGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGI 190
Query: 185 AS-VGPQSYGGGMRPP-PNSLAGP------------------------------------ 206
+GP G M PP P L GP
Sbjct: 191 PGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP 250
Query: 207 ----------GLPAMNMGP----GVRGPWASPSGN------------------------- 227
GLP + GP G+RGP P G
Sbjct: 251 IDVEFQKGDQGLPG-DRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQP 309
Query: 228 SIPYSSSSPGSYTGPP---------GGGGPPGTP--IMPSPGDSTNSSENMYTIMNPIGQ 276
IP PG Y G P G GPPG P ++P PG E + +
Sbjct: 310 GIPGLPGDPG-YPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPG 368
Query: 277 GAGRANFPLGPGPEG-----PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAP 331
G FP GP G A M P G G +G P S GL P
Sbjct: 369 EKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 332 GTPRDDGEMAAAGTFLHPFPSESYSPG 358
G P G AG + P E PG
Sbjct: 429 GAPGLPGPPGPAGPHIPP-SDEICEPG 454
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
G R P PGLP G GP + IP P GPPG G PGTP +
Sbjct: 48 GERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIP-GPPGPKGIRGPPGLPGFPGTPGL 106
Query: 255 PS-PG-DSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGS 310
P PG D + + G+ G FP GP GP + G GS
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPG------MKGEPGS 160
Query: 311 GDMDGL--PKSSPG-----AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
M L PK +PG + GL G P G G P P
Sbjct: 161 IIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGP 208
Score = 39.7 bits (91), Expect = 0.004
Identities = 41/130 (31%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPG--SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P FPG P+ S P G PG P PG PS ++ GP P
Sbjct: 1332 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1391
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 245
GPQ G + P PG P N PG G +P + G GPPG
Sbjct: 1392 LPGPQ----GPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG-LDGPPGP 1446
Query: 246 GG---PPGTP 252
G PPG P
Sbjct: 1447 DGLQGPPGPP 1456
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 75.1 bits (183), Expect = 9e-14
Identities = 92/321 (28%), Positives = 114/321 (35%), Gaps = 59/321 (18%)
Query: 88 KAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAG 147
K + + P +G APG AG + PR G R L P G
Sbjct: 299 KGHRGHKGLEGPKGEVG--APGSKGEAGPTGPMGAMGPLGPRGMPGERGRLG-----PQG 351
Query: 148 LPGSQ-----PLLPGAMEPS--PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPP 200
PG + P PG M P P + G P G P GPQ G PP
Sbjct: 352 APGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP- 410
Query: 201 NSLAGPGLPAM---NMGPGVRGPWASPSGNSIPYSSSSPGS-----YTGPPGGGGPPGTP 252
+ PGLP + PG +GP SP + P S+ PGS TGP G G PG P
Sbjct: 411 GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDP 470
Query: 253 IMPS-PGDSTNSSE-NMYTIMNPIG-------------------------QGA-GRANFP 284
+P G++ E + I PIG +GA G FP
Sbjct: 471 GVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFP 530
Query: 285 LGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAA 342
G GP A P +G GS G P PGA GL+ PG +G++
Sbjct: 531 GSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGA-RGLTGNPGVQGPEGKLGP 589
Query: 343 AGTFLHPFPSESYSPGMTMSV 363
G P E PG S+
Sbjct: 590 LGA-----PGEDGRPGPPGSI 605
Score = 62.0 bits (149), Expect = 8e-10
Identities = 71/249 (28%), Positives = 83/249 (33%), Gaps = 41/249 (16%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA----------MEPSPRAQGHPSMGGPMQ- 176
PR P G +P QP A P P PG M G S G M
Sbjct: 154 PRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPG 213
Query: 177 RVTP--PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGP----GVRGPWASPSGNSIP 230
V P PRG + Q G G PP PG MGP G GP P + P
Sbjct: 214 SVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPG----PMGPIGSRGPEGPPGKPGEDGEP 269
Query: 231 YSSSSPG--SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPG 288
+ +PG + G PG G PG P +P + P G+ G G
Sbjct: 270 GRNGNPGEVGFAGSPGARGFPGAPGLP----GLKGHRGHKGLEGPKGE-VGAPGSKGEAG 324
Query: 289 PEGPMAAMSAMEPHHVNGSLGSGDMDGLP-------------KSSPGAVAGLSNAPGTPR 335
P GPM AM + P + G G G P P + G S PG P
Sbjct: 325 PTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPG 384
Query: 336 DDGEMAAAG 344
GE G
Sbjct: 385 MKGEAGPTG 393
Score = 57.0 bits (136), Expect = 3e-08
Identities = 86/277 (31%), Positives = 102/277 (36%), Gaps = 25/277 (9%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPP--AGLPGSQ-PLL 155
P P S PG AG+ AG +P G P+ P PP AG G Q P
Sbjct: 617 PGPKGSSGDPGKPGEAGN--AGVPGQRGAPGKDGEVGPS--GPVGPPGLAGERGEQGPPG 672
Query: 156 PGAMEPSPRAQGHPSMGG-PMQRVTP--PRGMASVGPQSYGG--GMRPPPNSLAGPGLPA 210
P + P G P GG P + P P + +GP+ G G R P PG
Sbjct: 673 PTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKG 732
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 270
M G G GP SP + P + PG G PG G GTP T
Sbjct: 733 MAGGHGPDGPKGSPGPSGTPGDTGPPG-LQGMPGERGIAGTPGPKGDRGGIGEKGAEGTA 791
Query: 271 MNPIGQGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGS-GDMDGLPKSSP-GAVA-- 325
N GA PLG PGP GP P + G GS G+ ++ P GAV
Sbjct: 792 GN---DGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFA 848
Query: 326 ---GLSNAPGTPRDDGEMAAAGTFLHPFPSE-SYSPG 358
G PG + GE G P P + SPG
Sbjct: 849 GPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPG 885
Score = 56.2 bits (134), Expect = 4e-08
Identities = 79/273 (28%), Positives = 95/273 (34%), Gaps = 27/273 (9%)
Query: 92 DYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFP---GGPRPTLRMPSQP-PAG 147
D P PV APG+ GS + R P GP+ + P +P G
Sbjct: 508 DPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPG 567
Query: 148 LPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP-PRGMASVGPQSYGGGMRPPPNSLAGP 206
LPG++ L P + P +G P + P P G + Q G+ P S P
Sbjct: 568 LPGARGLTGNPGVQGPEGKLGP-LGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDP 626
Query: 207 GLP--AMNMG-PGVRGP-----WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 258
G P A N G PG RG PSG P + GPPG G G P P P
Sbjct: 627 GKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPP 686
Query: 259 DSTNSSENMYTIMNPIGQGAGRANFPLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMD 314
+ +P G PLGP G G G G D
Sbjct: 687 GEGGKPGDQGVPGDPGAVG------PLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPD 740
Query: 315 GLPKSSPG--AVAGLSNAPGTPRDDGEMAAAGT 345
G PK SPG G + PG GE AGT
Sbjct: 741 G-PKGSPGPSGTPGDTGPPGLQGMPGERGIAGT 772
Score = 55.5 bits (132), Expect = 8e-08
Identities = 79/300 (26%), Positives = 97/300 (32%), Gaps = 74/300 (24%)
Query: 124 PFMSPRFPGGPRPT----LRMPSQPP--------------------AGLPGSQ-----PL 154
P P PG P P R P PP AG PG++ P
Sbjct: 235 PTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPG 294
Query: 155 LPG--------------AMEPSPRAQGHPSMGGPMQRVTP--PRGM----ASVGPQSYGG 194
LPG +P ++G GPM + P PRGM +GPQ G
Sbjct: 295 LPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPG 354
Query: 195 --------GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 246
G P L PG PG++G A P+G P TGPPG
Sbjct: 355 QRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGE-AGPTGARGPEGPQGQRGETGPPGPV 413
Query: 247 GPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 306
G PG P ++ P G G + P GP G + P + G
Sbjct: 414 GSPGLP-------GAIGTDGTPGAKGPTG-SPGTSGPPGSAGPPGSPGPQGSTGPQGIRG 465
Query: 307 SLGSGDMDGL-----PKSSPG--AVAGLSNAPGTPRDDGEMAAAGTFLHPFP-SESYSPG 358
G + G PK PG + G PG G GT P P E +PG
Sbjct: 466 QPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPG 525
Score = 54.3 bits (129), Expect = 2e-07
Identities = 66/234 (28%), Positives = 76/234 (32%), Gaps = 54/234 (23%)
Query: 125 FMSPRFPGGPRPTLRMPSQP----PAGLPGSQPLLPGAMEPSPRA-QGHPSMGGPMQRVT 179
F P+ P G P +P AG PG Q L A P P G P + G
Sbjct: 847 FAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGL---AGSPGPHGPNGVPGLKG------ 897
Query: 180 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY 239
G + GP G P S G P PG GP P P PGS+
Sbjct: 898 ---GRGTQGPPGATGF----PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSH 950
Query: 240 --TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 297
G G GPPG PGD + E+ GQ PGP+GP
Sbjct: 951 GRVGDRGPAGPPG-----GPGDKGDPGED--------GQ----------PGPDGPPGPAG 987
Query: 298 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
+ G G G+P GL GTP G A G P P
Sbjct: 988 TTGQRGIVGMPGQRGERGMP--------GLPGPAGTPGKVGPTGATGDKGPPGP 1033
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/241 (28%), Positives = 83/241 (34%), Gaps = 38/241 (15%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPM--QRVTPPRGMA 185
P G P R+ + PAG PG PG + P G P GP T RG+
Sbjct: 941 PGLRGDPGSHGRVGDRGPAGPPGG----PGD-KGDPGEDGQPGPDGPPGPAGTTGQRGIV 995
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWAS-----PSGNSIPYSSSSPGSYT 240
+ Q GM PGLP PG GP + P G P S+ P
Sbjct: 996 GMPGQRGERGM---------PGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEP 1046
Query: 241 GPPGGGGPPGTP----IMPSPGDSTN-------SSENMYTIMNPIGQ--GAGRANFPLGP 287
GP G G GTP + GD + S+ P+G AG+ P
Sbjct: 1047 GPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSR 1106
Query: 288 GPEGP---MAAMSAMEPHHVNGSLGS-GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAA 343
GP GP P G G GD + GL PG P +GE +A
Sbjct: 1107 GPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSA 1166
Query: 344 G 344
G
Sbjct: 1167 G 1167
Score = 50.4 bits (119), Expect = 2e-06
Identities = 55/189 (29%), Positives = 64/189 (33%), Gaps = 42/189 (22%)
Query: 178 VTPPRGMASVGPQSYGGG----------MRPPPNSLA---------GPGLPAMNMGP-GV 217
VTPP V Q+ GGG + P + GP P + GP G
Sbjct: 86 VTPPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGE 145
Query: 218 RGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSP-GDSTNSSENMYTIMNPIGQ 276
RGP P PG G PG GPPG P P P G S S M + G
Sbjct: 146 RGPKGRPGPRGPQGIDGEPG-VPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGL 204
Query: 277 GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRD 336
G+ P GP GP P + G G AG + PG P D
Sbjct: 205 GSQVGLMPGSVGPVGPRG------PQGLQGQQGG--------------AGPTGPPGEPGD 244
Query: 337 DGEMAAAGT 345
G M G+
Sbjct: 245 PGPMGPIGS 253
Score = 36.2 bits (82), Expect = 0.047
Identities = 41/129 (31%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 136 PTLRMPSQPPA-----GLPGSQPLLPGAMEPSPRA----QGHPSMGGPMQRVTPPRGMAS 186
P R P PP GLPG Q + R +GH G PP
Sbjct: 1103 PGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGE 1162
Query: 187 VGPQSYGG--GMRPPPNSLAGPGLPAMNMG-PGVRGPWASPS--GNSIPYSSSSPGSYTG 241
G G G R PP GP P+ G PG GP P G+ P G
Sbjct: 1163 QGSAGIPGPFGPRGPP----GPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPG 1218
Query: 242 PPGGGGPPG 250
PPG GPPG
Sbjct: 1219 PPGPPGPPG 1227
Score = 33.1 bits (74), Expect = 0.40
Identities = 49/152 (32%), Positives = 56/152 (36%), Gaps = 40/152 (26%)
Query: 145 PAGLPGSQ--PLLPGAM-EPSPRAQ-GHPSMGGPM-------QRVTP----PRG------ 183
PAGLPGSQ P PG + P Q G P GP+ +R P PRG
Sbjct: 1075 PAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHG 1134
Query: 184 ----MASVGPQSYGG--GMRPPPN------SLAGPGLPAMNMGPGVRGPWASPSGNSIPY 231
G + + G G+ PP S PG PG GP + GN P
Sbjct: 1135 DRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGP-SGKEGNPGPL 1193
Query: 232 SSSSP----GSY--TGPPGGGGPPGTPIMPSP 257
P GS GP G G PG P P P
Sbjct: 1194 GPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGP 1225
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 73.9 bits (180), Expect = 2e-13
Identities = 78/276 (28%), Positives = 92/276 (33%), Gaps = 40/276 (14%)
Query: 106 MAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA 165
MA G AG G Q M P P GP PAG PG P + +P
Sbjct: 183 MAGGFDEKAGGAQLGVMQGPMGPMGPRGP--------PGPAGAPG-----PQGFQGNPGE 229
Query: 166 QGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGP 220
G P + GPM PP G G G R PP G P PGV+G
Sbjct: 230 PGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGH 289
Query: 221 WASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIMPS--PGD-------------STNS 263
P + + +PG +G PG G PG P+ P PG+ +
Sbjct: 290 RGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGPRGLPGERGRTGPAGAAGARGNDG 348
Query: 264 SENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 323
P+G AG FP PG +G A P G G G P P
Sbjct: 349 QPGPAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP--GPAG 405
Query: 324 VAGLSNAPGTPRDDGEMAAAGTFLHP-FPSESYSPG 358
+G G P G A G P FP PG
Sbjct: 406 ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
Score = 68.6 bits (166), Expect = 9e-12
Identities = 77/266 (28%), Positives = 90/266 (33%), Gaps = 50/266 (18%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ-----PLLPGAM--- 159
PGD AG R P GP+ P P GLPG + P L GA
Sbjct: 251 PGDDGEAGKPGKA------GERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAKGEA 302
Query: 160 --------EPSPRAQGHPSMGGPM-----QRVTPPRGMASVGPQSYGGGMRPPPNSLAGP 206
SP G P GP + T P G A G PP +
Sbjct: 303 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA 362
Query: 207 GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP------PGTPIMPSPGDS 260
G P PG +G A P+G P + P G PG GP PGT +P S
Sbjct: 363 GGPGFPGAPGAKGE-AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 421
Query: 261 TNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--PK 318
+ AG FP GP GP A + P G G G PK
Sbjct: 422 AGAPGI-----------AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 470
Query: 319 SSPGAVAGLSNAPGTPRDDGEMAAAG 344
PG AG APG ++G+ A G
Sbjct: 471 GEPGP-AGPQGAPGPAGEEGKRGARG 495
Score = 62.8 bits (151), Expect = 5e-10
Identities = 79/267 (29%), Positives = 99/267 (37%), Gaps = 37/267 (13%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL--L 155
P P PGD G A G P FPG Q P GLPG+
Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP 730
Query: 156 PGAMEPS--PRAQGHPSMGG-PMQR----VTPPRG----MASVGPQSYGG--GMRPPPNS 202
GA P+ P AQG P + G P +R + P+G + GP+ G G R
Sbjct: 731 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 790
Query: 203 LAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG---PPGTPIMPSPGD 259
+ PG N G GP P+G++ + TGPPG G PPG PG
Sbjct: 791 IGPPGPAGANGEKGEVGP-PGPAGSAGARGAPGERGETGPPGPAGFAGPPGAD--GQPGA 847
Query: 260 STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS 319
E AG+ PGP+GP A P V G G+ G P +
Sbjct: 848 KGEQGE------------AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGA 895
Query: 320 S--PGAVAGLSNAPGTPRDDGEMAAAG 344
+ PGA AG PG+ + G G
Sbjct: 896 TGFPGA-AGRVGPPGSNGNPGPPGPPG 921
Score = 62.0 bits (149), Expect = 8e-10
Identities = 79/295 (26%), Positives = 96/295 (32%), Gaps = 55/295 (18%)
Query: 91 QDYSAAAAPSPVMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLP 149
Q + P G+ P G T G AAG P S PG P P P G
Sbjct: 875 QGPTGVTGPKGARGAQGPPGATGFPG--AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR 932
Query: 150 GS--------QPLLPGAMEPSPRAQGHPSMGGPMQRVTPP--------RGMASV----GP 189
G +P L G P P +G P GP PP RG+ + G
Sbjct: 933 GDSGPPGRAGEPGLQGPAGP-PGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 190 QSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG---- 237
+ + G G + P + G P PG+ GP P P + PG
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA 1051
Query: 238 -------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP-GP 289
TG G G PG P P P T + +G A P+GP GP
Sbjct: 1052 AGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD---------RGEAGAQGPMGPSGP 1102
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G P G G GL K G GL PG P G+ A+G
Sbjct: 1103 AGARGIQGPQGPRGDKGEAGEPGERGL-KGHRG-FTGLQGLPGPPGPSGDQGASG 1155
Score = 58.9 bits (141), Expect = 7e-09
Identities = 65/231 (28%), Positives = 83/231 (35%), Gaps = 30/231 (12%)
Query: 133 GPRPTLRMPSQP-PAGLPGSQPLL--PGAMEP--------SPRAQGHPSMGGPMQRVTPP 181
GP+ P +P GLPG++ L PG P +P G P GP P
Sbjct: 540 GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Query: 182 RGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPW--ASPSGNSIPYSSS 234
M GP+ G G + P + GLP + G GP A P+G +
Sbjct: 600 GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP 659
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSE-NMYTIMNPIGQGAGRANFPLGPGPEGPM 293
P + G PG GPPG PGD E ++ P G+ PG G
Sbjct: 660 GPSGFQGLPGPPGPPGEG--GKPGDQGVPGEAGAPGLVGPRGERG-------FPGERGSP 710
Query: 294 AAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
A P + G+ G+ G S P G PG GE AAG
Sbjct: 711 GAQGLQGPRGLPGTPGTDGPKG--ASGPAGPPGAQGPPGLQGMPGERGAAG 759
Score = 57.8 bits (138), Expect = 2e-08
Identities = 78/274 (28%), Positives = 93/274 (33%), Gaps = 49/274 (17%)
Query: 96 AAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP-PAGLPGSQPL 154
A P PV + PG A G+ P GPR P P PAG G+
Sbjct: 353 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 412
Query: 155 --LPGAMEPS--PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPA 210
+PGA + P G P GP PP + GP P PG+
Sbjct: 413 DGIPGAKGSAGAPGIAGAPGFPGPRG---PPGPQGATGPLG-------PKGQTGEPGIAG 462
Query: 211 MN--MGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENM 267
GP G GP A P G P G PGG GP G PG+
Sbjct: 463 FKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEPGGVGPIG-----PPGE-------- 508
Query: 268 YTIMNPIGQGA-GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAV 324
+GA G FP G GP A P + G G+ G P PGA
Sbjct: 509 --------RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA- 559
Query: 325 AGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
GL+ PG G++ +G P E PG
Sbjct: 560 RGLTGRPGDAGPQGKVGPSGA-----PGEDGRPG 588
Score = 53.5 bits (127), Expect = 3e-07
Identities = 52/175 (29%), Positives = 63/175 (36%), Gaps = 14/175 (8%)
Query: 181 PRGMASVGPQSYGGGMRPPPNSL---AGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSP 236
P +A+ Q G + P + GP P GP G +GP G+ + P
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP-RGDRGDKGEKGAPGP 148
Query: 237 GSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIM-NPIGQGAGRANF-----PLGP-GP 289
G PG G PG P P P N M + AG A P+GP GP
Sbjct: 149 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGP 208
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
GP A P G+ G G+ S P G PG P DDGE G
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPPGKPGDDGEAGKPG 261
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/187 (31%), Positives = 63/187 (33%), Gaps = 18/187 (9%)
Query: 75 PDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGP 134
P R A G+ A AP P G T G Q M P P G
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Query: 135 RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGMASVGPQSYG 193
R Q P G G + A EP R +GH G PP G
Sbjct: 1106 RGI-----QGPQGPRGDKG---EAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA 1157
Query: 194 G--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGT 251
G G R PP + G N PG GP P G S + P GPPG GPPG
Sbjct: 1158 GPSGPRGPPGPVGPSGKDGANGIPGPIGP-PGPRGRS---GETGPA---GPPGNPGPPGP 1210
Query: 252 PIMPSPG 258
P P PG
Sbjct: 1211 PGPPGPG 1217
Score = 53.1 bits (126), Expect = 4e-07
Identities = 61/217 (28%), Positives = 68/217 (31%), Gaps = 35/217 (16%)
Query: 147 GLPGSQ----PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNS 202
G PG + P P P A G P G + GPQ P+
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG--------PSG 870
Query: 203 LAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 261
GP P GP G RG P P ++ GPPG G PG P P P
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR----VGPPGSNGNPGPPGPPGPSGKD 926
Query: 262 NSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSP 321
P GRA P GP GP EP G G +G P P
Sbjct: 927 GPKGARGDSGPP-----GRAGEPGLQGPAGPPGEKG--EP----GDDGPSGAEGPP--GP 973
Query: 322 GAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
+AG G P GE G P S PG
Sbjct: 974 QGLAGQRGIVGLPGQRGERGFPG-----LPGPSGEPG 1005
Score = 42.0 bits (97), Expect = 9e-04
Identities = 49/167 (29%), Positives = 54/167 (32%), Gaps = 28/167 (16%)
Query: 131 PGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP 189
PG P P P P PAG G Q +G GPM P GP
Sbjct: 1067 PGAPGP----PGSPGPAGPTGKQG-----------DRGEAGAQGPMGPSGPAGARGIQGP 1111
Query: 190 QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP- 248
Q G R PG + G G P P S +GP G GP
Sbjct: 1112 Q----GPRGDKGEAGEPGERGLKGHRGFTGLQGLPG----PPGPSGDQGASGPAGPSGPR 1163
Query: 249 -PGTPIMPSPGDSTNSSENMYTIMNPIGQG--AGRANFPLGPGPEGP 292
P P+ PS D N P G+ G A P PGP GP
Sbjct: 1164 GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1210
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 73.9 bits (180), Expect = 2e-13
Identities = 78/276 (28%), Positives = 92/276 (33%), Gaps = 40/276 (14%)
Query: 106 MAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA 165
MA G AG G Q M P P GP PAG PG P + +P
Sbjct: 114 MAGGFDEKAGGAQLGVMQGPMGPMGPRGP--------PGPAGAPG-----PQGFQGNPGE 160
Query: 166 QGHPSMGGPMQRVTPPRGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGP 220
G P + GPM PP G G G R PP G P PGV+G
Sbjct: 161 PGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGH 220
Query: 221 WASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIMPS--PGD-------------STNS 263
P + + +PG +G PG G PG P+ P PG+ +
Sbjct: 221 RGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGPRGLPGERGRTGPAGAAGARGNDG 279
Query: 264 SENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 323
P+G AG FP PG +G A P G G G P P
Sbjct: 280 QPGPAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP--GPAG 336
Query: 324 VAGLSNAPGTPRDDGEMAAAGTFLHP-FPSESYSPG 358
+G G P G A G P FP PG
Sbjct: 337 ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
Score = 68.6 bits (166), Expect = 9e-12
Identities = 77/266 (28%), Positives = 90/266 (33%), Gaps = 50/266 (18%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ-----PLLPGAM--- 159
PGD AG R P GP+ P P GLPG + P L GA
Sbjct: 182 PGDDGEAGKPGKA------GERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAKGEA 233
Query: 160 --------EPSPRAQGHPSMGGPM-----QRVTPPRGMASVGPQSYGGGMRPPPNSLAGP 206
SP G P GP + T P G A G PP +
Sbjct: 234 GAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA 293
Query: 207 GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP------PGTPIMPSPGDS 260
G P PG +G A P+G P + P G PG GP PGT +P S
Sbjct: 294 GGPGFPGAPGAKGE-AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 352
Query: 261 TNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--PK 318
+ AG FP GP GP A + P G G G PK
Sbjct: 353 AGAPGI-----------AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 401
Query: 319 SSPGAVAGLSNAPGTPRDDGEMAAAG 344
PG AG APG ++G+ A G
Sbjct: 402 GEPGP-AGPQGAPGPAGEEGKRGARG 426
Score = 62.8 bits (151), Expect = 5e-10
Identities = 79/267 (29%), Positives = 99/267 (37%), Gaps = 37/267 (13%)
Query: 99 PSPVMGSMAPGDTMAAGSMAA-GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL--L 155
P P PGD G A G P FPG Q P GLPG+
Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP 661
Query: 156 PGAMEPS--PRAQGHPSMGG-PMQR----VTPPRG----MASVGPQSYGG--GMRPPPNS 202
GA P+ P AQG P + G P +R + P+G + GP+ G G R
Sbjct: 662 KGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP 721
Query: 203 LAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG---PPGTPIMPSPGD 259
+ PG N G GP P+G++ + TGPPG G PPG PG
Sbjct: 722 IGPPGPAGANGEKGEVGP-PGPAGSAGARGAPGERGETGPPGPAGFAGPPGAD--GQPGA 778
Query: 260 STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS 319
E AG+ PGP+GP A P V G G+ G P +
Sbjct: 779 KGEQGE------------AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGA 826
Query: 320 S--PGAVAGLSNAPGTPRDDGEMAAAG 344
+ PGA AG PG+ + G G
Sbjct: 827 TGFPGA-AGRVGPPGSNGNPGPPGPPG 852
Score = 62.0 bits (149), Expect = 8e-10
Identities = 79/295 (26%), Positives = 96/295 (32%), Gaps = 55/295 (18%)
Query: 91 QDYSAAAAPSPVMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLP 149
Q + P G+ P G T G AAG P S PG P P P G
Sbjct: 806 QGPTGVTGPKGARGAQGPPGATGFPG--AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR 863
Query: 150 GS--------QPLLPGAMEPSPRAQGHPSMGGPMQRVTPP--------RGMASV----GP 189
G +P L G P P +G P GP PP RG+ + G
Sbjct: 864 GDSGPPGRAGEPGLQGPAGP-PGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 190 QSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG---- 237
+ + G G + P + G P PG+ GP P P + PG
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA 982
Query: 238 -------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP-GP 289
TG G G PG P P P T + +G A P+GP GP
Sbjct: 983 AGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD---------RGEAGAQGPMGPSGP 1033
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G P G G GL K G GL PG P G+ A+G
Sbjct: 1034 AGARGIQGPQGPRGDKGEAGEPGERGL-KGHRG-FTGLQGLPGPPGPSGDQGASG 1086
Score = 58.9 bits (141), Expect = 7e-09
Identities = 65/231 (28%), Positives = 83/231 (35%), Gaps = 30/231 (12%)
Query: 133 GPRPTLRMPSQP-PAGLPGSQPLL--PGAMEP--------SPRAQGHPSMGGPMQRVTPP 181
GP+ P +P GLPG++ L PG P +P G P GP P
Sbjct: 471 GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 530
Query: 182 RGMASVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPW--ASPSGNSIPYSSS 234
M GP+ G G + P + GLP + G GP A P+G +
Sbjct: 531 GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP 590
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSE-NMYTIMNPIGQGAGRANFPLGPGPEGPM 293
P + G PG GPPG PGD E ++ P G+ PG G
Sbjct: 591 GPSGFQGLPGPPGPPGEG--GKPGDQGVPGEAGAPGLVGPRGERG-------FPGERGSP 641
Query: 294 AAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
A P + G+ G+ G S P G PG GE AAG
Sbjct: 642 GAQGLQGPRGLPGTPGTDGPKG--ASGPAGPPGAQGPPGLQGMPGERGAAG 690
Score = 57.8 bits (138), Expect = 2e-08
Identities = 78/274 (28%), Positives = 93/274 (33%), Gaps = 49/274 (17%)
Query: 96 AAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP-PAGLPGSQPL 154
A P PV + PG A G+ P GPR P P PAG G+
Sbjct: 284 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 343
Query: 155 --LPGAMEPS--PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPA 210
+PGA + P G P GP PP + GP P PG+
Sbjct: 344 DGIPGAKGSAGAPGIAGAPGFPGPRG---PPGPQGATGPLG-------PKGQTGEPGIAG 393
Query: 211 MN--MGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENM 267
GP G GP A P G P G PGG GP G PG+
Sbjct: 394 FKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEPGGVGPIG-----PPGE-------- 439
Query: 268 YTIMNPIGQGA-GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAV 324
+GA G FP G GP A P + G G+ G P PGA
Sbjct: 440 --------RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA- 490
Query: 325 AGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
GL+ PG G++ +G P E PG
Sbjct: 491 RGLTGRPGDAGPQGKVGPSGA-----PGEDGRPG 519
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/187 (31%), Positives = 63/187 (33%), Gaps = 18/187 (9%)
Query: 75 PDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGP 134
P R A G+ A AP P G T G Q M P P G
Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Query: 135 RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGMASVGPQSYG 193
R Q P G G + A EP R +GH G PP G
Sbjct: 1037 RGI-----QGPQGPRGDKG---EAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA 1088
Query: 194 G--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGT 251
G G R PP + G N PG GP P G S + P GPPG GPPG
Sbjct: 1089 GPSGPRGPPGPVGPSGKDGANGIPGPIGP-PGPRGRS---GETGPA---GPPGNPGPPGP 1141
Query: 252 PIMPSPG 258
P P PG
Sbjct: 1142 PGPPGPG 1148
Score = 53.1 bits (126), Expect = 4e-07
Identities = 61/217 (28%), Positives = 68/217 (31%), Gaps = 35/217 (16%)
Query: 147 GLPGSQ----PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNS 202
G PG + P P P A G P G + GPQ P+
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG--------PSG 801
Query: 203 LAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 261
GP P GP G RG P P ++ GPPG G PG P P P
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR----VGPPGSNGNPGPPGPPGPSGKD 857
Query: 262 NSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSP 321
P GRA P GP GP EP G G +G P P
Sbjct: 858 GPKGARGDSGPP-----GRAGEPGLQGPAGPPGEKG--EP----GDDGPSGAEGPP--GP 904
Query: 322 GAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
+AG G P GE G P S PG
Sbjct: 905 QGLAGQRGIVGLPGQRGERGFPG-----LPGPSGEPG 936
Score = 51.6 bits (122), Expect = 1e-06
Identities = 47/150 (31%), Positives = 55/150 (36%), Gaps = 11/150 (7%)
Query: 203 LAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDST 261
+ GP P GP G +GP G+ + P G PG G PG P P P
Sbjct: 46 IVGPKGPPGPQGPAGEQGP-RGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPP 104
Query: 262 NSSENMYTIM-NPIGQGAGRANF-----PLGP-GPEGPMAAMSAMEPHHVNGSLGSGDMD 314
N M + AG A P+GP GP GP A P G+ G
Sbjct: 105 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 164
Query: 315 GLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G+ S P G PG P DDGE G
Sbjct: 165 GV--SGPMGPRGPPGPPGKPGDDGEAGKPG 192
Score = 42.0 bits (97), Expect = 9e-04
Identities = 49/167 (29%), Positives = 54/167 (32%), Gaps = 28/167 (16%)
Query: 131 PGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP 189
PG P P P P PAG G Q +G GPM P GP
Sbjct: 998 PGAPGP----PGSPGPAGPTGKQG-----------DRGEAGAQGPMGPSGPAGARGIQGP 1042
Query: 190 QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGP- 248
Q G R PG + G G P P S +GP G GP
Sbjct: 1043 Q----GPRGDKGEAGEPGERGLKGHRGFTGLQGLPG----PPGPSGDQGASGPAGPSGPR 1094
Query: 249 -PGTPIMPSPGDSTNSSENMYTIMNPIGQG--AGRANFPLGPGPEGP 292
P P+ PS D N P G+ G A P PGP GP
Sbjct: 1095 GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1141
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/222 (27%), Positives = 72/222 (32%), Gaps = 32/222 (14%)
Query: 145 PAGLPGSQPLLPGAMEPSPRA----QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPP 200
P G PG Q A E PR +G GP R P + GP PP
Sbjct: 49 PKGPPGPQG---PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG-------PP 98
Query: 201 NSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP----IMPS 256
PGL N + G + +G + P GP G GP G P +
Sbjct: 99 GPPGPPGLGG-NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN 157
Query: 257 PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL 316
PG+ + P+G G P PG +G G G+ G
Sbjct: 158 PGEPGEPG-----VSGPMGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 211
Query: 317 PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
P PG V G PG GE A G ES SPG
Sbjct: 212 P-GLPG-VKGHRGYPGLDGAKGEAGAPGV-----KGESGSPG 246
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 73.2 bits (178), Expect = 3e-13
Identities = 77/245 (31%), Positives = 96/245 (39%), Gaps = 40/245 (16%)
Query: 124 PFMSPRFPGGPR--PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPP 181
P S R GPR P R P PP GLPG +PG ++ P QG+P +G P P
Sbjct: 112 PLASLRGEQGPRGEPGPRGPPGPP-GLPGHG--IPG-IKGKPGPQGYPGVGKPGMPGMPG 167
Query: 182 R----GM----------ASVGPQSYGGGMRPP-PNSLAGPGLPAMNMGPGVRGPWASPSG 226
+ GM +GP G PP P+ L G G P GPG+ G P G
Sbjct: 168 KPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPG---GPGLPGQ-PGPKG 223
Query: 227 NSIPYSSSSPGSYTGPPG--GGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANF 283
+ P P GP G G G PG P + P M+ P+G G G+
Sbjct: 224 DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGP-------PGMHGPPGPVGLPGVGKPGV 276
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG----AVAGLSNAPGTPRDDGE 339
PGP+GP+ A G +G + G P PG G+ PG P GE
Sbjct: 277 TGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQG-PPGIPGIGKPGQDGIPGQPGFPGGKGE 335
Query: 340 MAAAG 344
G
Sbjct: 336 QGLPG 340
Score = 61.2 bits (147), Expect = 1e-09
Identities = 78/268 (29%), Positives = 92/268 (34%), Gaps = 54/268 (20%)
Query: 99 PSPV--MGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ--PL 154
P PV G PG T G P P PG P P Q P G+PG Q P
Sbjct: 263 PGPVGLPGVGKPGVTGFPGPQG-----PLGKPGAPGEPGP------QGPIGVPGVQGPPG 311
Query: 155 LPGAMEPS----PRAQGHPSMGGPMQRVTP----PRGMASVGPQSYGG-----GMRPPPN 201
+PG +P P G P GG ++ P P G+ +G + G GM P
Sbjct: 312 IPGIGKPGQDGIPGQPGFP--GGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPG 369
Query: 202 SLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS--YTGPPGGGGPPGTPIMPSPGD 259
+L G PG+ GP P IP PG+ + GP G GG G P P
Sbjct: 370 ALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKG 429
Query: 260 STNSSENMYTIMNPIGQGAGRANFPLGP---GPEGPMAAMSAMEPHHVNGSLGSGDMDGL 316
G FP P G GP P G G + GL
Sbjct: 430 E-----------------PGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGL 472
Query: 317 PKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
P PG + G PG P D G G
Sbjct: 473 P-GVPG-LLGPKGEPGIPGDQGLQGPPG 498
Score = 59.7 bits (143), Expect = 4e-09
Identities = 76/262 (29%), Positives = 89/262 (33%), Gaps = 42/262 (16%)
Query: 128 PRFPGGPRPTLRMPSQP-PAGLPG-SQPLLPGAMEP----------SPRAQ----GHPSM 171
P FPGG + +P P P GLPG +P PG PR + G P +
Sbjct: 327 PGFPGG-KGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGI 385
Query: 172 GGPMQR---------VTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGP 220
GGP + PP + GP+ GG G + PP PGL PG G
Sbjct: 386 GGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGE 445
Query: 221 WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA-G 279
P +P P G G G PG P + P P QG G
Sbjct: 446 VGPPGMRGLP-GPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGI---------PGDQGLQG 495
Query: 280 RANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGE 339
P GP GP+ P G G G+ K PG VAGL PG P G
Sbjct: 496 PPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGK--PG-VAGLHGPPGKPGALGP 552
Query: 340 MAAAGTFLHPFPSESYSPGMTM 361
G P P P M
Sbjct: 553 QGQPGLPGPPGPPGPPGPPAVM 574
Score = 59.7 bits (143), Expect = 4e-09
Identities = 81/275 (29%), Positives = 104/275 (37%), Gaps = 39/275 (14%)
Query: 102 VMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ-------P 153
V G++ P G+ G A G P P PG P P M G PG + P
Sbjct: 367 VPGALGPRGEKGPIG--APGIGGPPGEPGLPGIPGP---MGPPGAIGFPGPKGEGGIVGP 421
Query: 154 LLPGAMEPSPRAQGHPSMGGPMQRVTPP--RGMAS-VGPQSYGGGMRPPPNSLAGPGLPA 210
P + P QG P G + V PP RG+ +GP+ G + P PGL
Sbjct: 422 QGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAG-QKGVPGLPGVPGLLG 480
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMYT 269
PG+ G IP P GPPG GP G P +P PG +
Sbjct: 481 PKGEPGIPGDQGLQGPPGIP-GIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAG 539
Query: 270 IMNPIGQ-GA----GRANFPLGPGPEGPMAAMSAMEP-----HHVNGSLGSGDMDGL-PK 318
+ P G+ GA G+ P PGP GP + M P +G G +DG+ P
Sbjct: 540 LHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLG-IDGVKPP 598
Query: 319 SSPGAVAGLSNAPG--TPRDDGEMAAAGTFLHPFP 351
+ GA G + P P E+ A PFP
Sbjct: 599 HAYGAKKGKNGGPAYEMPAFTAELTA------PFP 627
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 73.2 bits (178), Expect = 3e-13
Identities = 77/245 (31%), Positives = 96/245 (39%), Gaps = 40/245 (16%)
Query: 124 PFMSPRFPGGPR--PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPP 181
P S R GPR P R P PP GLPG +PG ++ P QG+P +G P P
Sbjct: 112 PLASLRGEQGPRGEPGPRGPPGPP-GLPGHG--IPG-IKGKPGPQGYPGVGKPGMPGMPG 167
Query: 182 R----GM----------ASVGPQSYGGGMRPP-PNSLAGPGLPAMNMGPGVRGPWASPSG 226
+ GM +GP G PP P+ L G G P GPG+ G P G
Sbjct: 168 KPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPG---GPGLPGQ-PGPKG 223
Query: 227 NSIPYSSSSPGSYTGPPG--GGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGAGRANF 283
+ P P GP G G G PG P + P M+ P+G G G+
Sbjct: 224 DRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGP-------PGMHGPPGPVGLPGVGKPGV 276
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPG----AVAGLSNAPGTPRDDGE 339
PGP+GP+ A G +G + G P PG G+ PG P GE
Sbjct: 277 TGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQG-PPGIPGIGKPGQDGIPGQPGFPGGKGE 335
Query: 340 MAAAG 344
G
Sbjct: 336 QGLPG 340
Score = 61.2 bits (147), Expect = 1e-09
Identities = 78/268 (29%), Positives = 92/268 (34%), Gaps = 54/268 (20%)
Query: 99 PSPV--MGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ--PL 154
P PV G PG T G P P PG P P Q P G+PG Q P
Sbjct: 263 PGPVGLPGVGKPGVTGFPGPQG-----PLGKPGAPGEPGP------QGPIGVPGVQGPPG 311
Query: 155 LPGAMEPS----PRAQGHPSMGGPMQRVTP----PRGMASVGPQSYGG-----GMRPPPN 201
+PG +P P G P GG ++ P P G+ +G + G GM P
Sbjct: 312 IPGIGKPGQDGIPGQPGFP--GGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPG 369
Query: 202 SLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS--YTGPPGGGGPPGTPIMPSPGD 259
+L G PG+ GP P IP PG+ + GP G GG G P P
Sbjct: 370 ALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKG 429
Query: 260 STNSSENMYTIMNPIGQGAGRANFPLGP---GPEGPMAAMSAMEPHHVNGSLGSGDMDGL 316
G FP P G GP P G G + GL
Sbjct: 430 E-----------------PGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGL 472
Query: 317 PKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
P PG + G PG P D G G
Sbjct: 473 P-GVPG-LLGPKGEPGIPGDQGLQGPPG 498
Score = 59.7 bits (143), Expect = 4e-09
Identities = 76/262 (29%), Positives = 89/262 (33%), Gaps = 42/262 (16%)
Query: 128 PRFPGGPRPTLRMPSQP-PAGLPG-SQPLLPGAMEP----------SPRAQ----GHPSM 171
P FPGG + +P P P GLPG +P PG PR + G P +
Sbjct: 327 PGFPGG-KGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGI 385
Query: 172 GGPMQR---------VTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGP 220
GGP + PP + GP+ GG G + PP PGL PG G
Sbjct: 386 GGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGE 445
Query: 221 WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA-G 279
P +P P G G G PG P + P P QG G
Sbjct: 446 VGPPGMRGLP-GPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGI---------PGDQGLQG 495
Query: 280 RANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGE 339
P GP GP+ P G G G+ K PG VAGL PG P G
Sbjct: 496 PPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGK--PG-VAGLHGPPGKPGALGP 552
Query: 340 MAAAGTFLHPFPSESYSPGMTM 361
G P P P M
Sbjct: 553 QGQPGLPGPPGPPGPPGPPAVM 574
Score = 59.7 bits (143), Expect = 4e-09
Identities = 81/275 (29%), Positives = 104/275 (37%), Gaps = 39/275 (14%)
Query: 102 VMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ-------P 153
V G++ P G+ G A G P P PG P P M G PG + P
Sbjct: 367 VPGALGPRGEKGPIG--APGIGGPPGEPGLPGIPGP---MGPPGAIGFPGPKGEGGIVGP 421
Query: 154 LLPGAMEPSPRAQGHPSMGGPMQRVTPP--RGMAS-VGPQSYGGGMRPPPNSLAGPGLPA 210
P + P QG P G + V PP RG+ +GP+ G + P PGL
Sbjct: 422 QGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAG-QKGVPGLPGVPGLLG 480
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PGDSTNSSENMYT 269
PG+ G IP P GPPG GP G P +P PG +
Sbjct: 481 PKGEPGIPGDQGLQGPPGIP-GIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAG 539
Query: 270 IMNPIGQ-GA----GRANFPLGPGPEGPMAAMSAMEP-----HHVNGSLGSGDMDGL-PK 318
+ P G+ GA G+ P PGP GP + M P +G G +DG+ P
Sbjct: 540 LHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLG-IDGVKPP 598
Query: 319 SSPGAVAGLSNAPG--TPRDDGEMAAAGTFLHPFP 351
+ GA G + P P E+ A PFP
Sbjct: 599 HAYGAKKGKNGGPAYEMPAFTAELTA------PFP 627
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 72.4 bits (176), Expect = 6e-13
Identities = 83/265 (31%), Positives = 96/265 (36%), Gaps = 34/265 (12%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPA----GLPG 150
A P P + APG AG + PR G R +P P A G G
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR---GERGEAGIPGVPGAKGEDGKDG 468
Query: 151 SQPLLPGA--MEPSPRAQGHPSMGGPMQRVTPPRGM-ASVGPQSYGGGMRPP-PNSLAG- 205
S P PGA + + +G P GP P G+ GP G P P AG
Sbjct: 469 S-PGEPGANGLPGAAGERGAPGFRGP----AGPNGIPGEKGPAGERGAPGPAGPRGAAGE 523
Query: 206 PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY-----TGPPGGGGPPGTP-IMPSPGD 259
PG + GPG+RG SP G PGS GPPG GP G P +M PG
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGP 583
Query: 260 STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS 319
N G+ R P GPGP+GP P G G G G +
Sbjct: 584 KGNDGAP--------GKNGERGG-PGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG--DT 632
Query: 320 SPGAVAGLSNAPGTPRDDGEMAAAG 344
P GL PGT GE G
Sbjct: 633 GPPGPQGLQGLPGTGGPPGENGKPG 657
Score = 68.9 bits (167), Expect = 7e-12
Identities = 83/269 (30%), Positives = 98/269 (36%), Gaps = 60/269 (22%)
Query: 127 SPRFPG--GPR--PTLRMPSQPP--AGLPGSQPLLPGAM-EPSPR----AQGHPSMGGPM 175
+P PG GPR P R + PP AG PG+ PG EP + A G GGP
Sbjct: 784 APGLPGIAGPRGSPGERGETGPPGPAGFPGA----PGQNGEPGGKGERGAPGEKGEGGPP 839
Query: 176 QRVTPPRGMASVGPQ----------SYGG-GMRPPPNSLAGPGLPAMNMGPGVRGPWASP 224
PP G GP S GG G P + PG P N PG GP SP
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 225 SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSP-GDSTNSSENMYTIMNPIGQGAGRANF 283
+ P GP G G PG+P + P GD+ E +P QG A
Sbjct: 900 GKDGPP----------GPAGNTGAPGSPGVSGPKGDAGQPGEK----GSPGAQGPPGAPG 945
Query: 284 PLG----------PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSN 329
PLG GP G + P V G G +GL P + GL+
Sbjct: 946 PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAG 1005
Query: 330 APGTPRDDGEMAAAGTFLHPFPSESYSPG 358
G P DG + G P SPG
Sbjct: 1006 TAGEPGRDGNPGSDG-----LPGRDGSPG 1029
Score = 66.6 bits (161), Expect = 3e-11
Identities = 89/307 (28%), Positives = 107/307 (34%), Gaps = 60/307 (19%)
Query: 85 GEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP 144
GE D A AP + APG+ G A + P P G + P P
Sbjct: 657 GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Query: 145 -PAGLPGSQPLLPGAM----EPSPRA-QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRP 198
AG PG Q + PG P P+ +G P GGP P + GP+ G + P
Sbjct: 717 GAAGTPGLQGM-PGERGGLGSPGPKGDKGEP--GGPGADGVPGKD----GPRGPTGPIGP 769
Query: 199 P-----PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP- 252
P P G P + PG+ GP SP TGPPG G PG P
Sbjct: 770 PGPAGQPGDKGEGGAPGL---PGIAGPRGSPGERG----------ETGPPGPAGFPGAPG 816
Query: 253 ---------IMPSPGDSTNSSENMYTIMNPIG----------QGA-GRANFPLGPGPEGP 292
+PG+ + P G QG G P GPG G
Sbjct: 817 QNGEPGGKGERGAPGEKGEGGPP--GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGF 874
Query: 293 MAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
A P NG+ G G P K P AG + APG+P G AG P
Sbjct: 875 PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQ-----P 929
Query: 352 SESYSPG 358
E SPG
Sbjct: 930 GEKGSPG 936
Score = 62.8 bits (151), Expect = 5e-10
Identities = 82/292 (28%), Positives = 93/292 (31%), Gaps = 41/292 (14%)
Query: 98 APSPVMGSMAPGDTM------AAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP------- 144
AP P+ APG+ AAG+ + P GP T P P
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 145 PAGLPGSQPLLPGAMEPSPR----AQGHPSMGGPMQRVTPPRGMASVGPQSYGG-----G 195
PAG PGS EP P+ AQG P GP P G +GP G G
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPP---GPPGINGSPGGKGEMGPAGIPGAPGLMG 411
Query: 196 MRPPPNSLAGPGLPAMNMG---PGVRGPWASPSGNSIPYSSSSPG-----SYTGPPGGGG 247
R PP G P + G PG G P + PG G G G
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPG 471
Query: 248 PPGTPIMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 306
PG +P + G+ N I G A PGP GP A V G
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPG 531
Query: 307 SLGSGDMDGLP-------KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
G M G P K P G S PG P G G P P
Sbjct: 532 GPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGP 583
Score = 57.4 bits (137), Expect = 2e-08
Identities = 64/211 (30%), Positives = 73/211 (34%), Gaps = 40/211 (18%)
Query: 147 GLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLA 204
GLPG PG M P +P +G P + G RG G PP +
Sbjct: 288 GLPGENGA-PGPMGPRGAPGERGRPGLPG----AAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 205 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNS 263
PG P G GP SP N P PG G G GPPG P I SPG
Sbjct: 343 FPGSPGAK---GEVGPAGSPGSNGAPGQRGEPGP-QGHAGAQGPPGPPGINGSPGGKGE- 397
Query: 264 SENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-----K 318
M P G PG G M A P NG+ G G P K
Sbjct: 398 -------MGPAGI----------PGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAK 440
Query: 319 SSPG-----AVAGLSNAPGTPRDDGEMAAAG 344
PG AG+ PG +DG+ + G
Sbjct: 441 GEPGPRGERGEAGIPGVPGAKGEDGKDGSPG 471
Score = 55.8 bits (133), Expect = 6e-08
Identities = 82/302 (27%), Positives = 104/302 (34%), Gaps = 61/302 (20%)
Query: 108 PGDTMAAGSMAAGFFQPFMSP-RFPGGPRPTLRMPSQPPAGLPG--SQPLLPGAMEPSPR 164
P + G A QP +P R P G P P G+PG P +PG SP
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPG-QPGSPG 133
Query: 165 AQGHPSM-----GGPMQRVTPP-------RGMASVGPQSYGGGMRPP-----PNSLAGPG 207
+ G P + GP Q +P G+A G Y G PP P + PG
Sbjct: 134 SPGPPGICESCPTGP-QNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPG 192
Query: 208 LPAMNMGPGVRGP-----WASPSGNSIPYSSSSPGS------------------YTGPPG 244
P PG +GP A PSG P + P GPPG
Sbjct: 193 SPG---SPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 249
Query: 245 GGGPPGTPIMPSP----GDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME 300
GP G P P G + E T + G PGP GP A
Sbjct: 250 IKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERG 309
Query: 301 PHHVNGSLGSGDMDGLPKSS----PGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYS 356
+ G+ G+ DG S P G + PG+P GE+ AG+ P + +
Sbjct: 310 RPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS-----PGSNGA 364
Query: 357 PG 358
PG
Sbjct: 365 PG 366
Score = 49.3 bits (116), Expect = 5e-06
Identities = 68/251 (27%), Positives = 82/251 (32%), Gaps = 51/251 (20%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVG 188
P GPR P + G+PG + +PG+ P + G P G P G
Sbjct: 514 PAGPRGAAGEPGRD--GVPGGPGMRGMPGS-PGGPGSDGKPGPPGSQGESGRPGPPGPSG 570
Query: 189 PQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY------- 239
P+ G G P + PG GPG GP P N PG
Sbjct: 571 PRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Query: 240 -TGPPGG------------------GGPP------GTPIMP-SPGDSTNSSENMYTIMNP 273
TGPPG G P G P P GD+ E P
Sbjct: 631 DTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGER-----GP 685
Query: 274 IGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGT 333
G AG G GP GP A P G+ G+ + G+ PG GL +PG
Sbjct: 686 PGL-AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM----PGERGGL-GSPGP 739
Query: 334 PRDDGEMAAAG 344
D GE G
Sbjct: 740 KGDKGEPGGPG 750
Score = 49.3 bits (116), Expect = 5e-06
Identities = 68/255 (26%), Positives = 85/255 (33%), Gaps = 28/255 (10%)
Query: 107 APGDTMAAGSMAA-GFFQP--FMSPRFPGGPRPTLRMPSQPPA-------GLPGSQPLLP 156
APG AG A G P PR GP+ +P A G PG Q L P
Sbjct: 943 APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGL-P 1001
Query: 157 GAMEPS--PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 214
G + P G+P G R P G G G P + PG P +G
Sbjct: 1002 GLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA----PGAPGHPGPPGP-VG 1056
Query: 215 PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPI 274
P + SG + P + P G PG GP GD + E +
Sbjct: 1057 PAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP--------RGDKGETGERGAAGIKGH 1108
Query: 275 GQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTP 334
G P PGP G A+ + P G +G G K G PG
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPG--KDGTSGHPGPIGPPGPR 1166
Query: 335 RDDGEMAAAGTFLHP 349
+ GE + G+ HP
Sbjct: 1167 GNRGERGSEGSPGHP 1181
Score = 38.5 bits (88), Expect = 0.009
Identities = 63/247 (25%), Positives = 85/247 (34%), Gaps = 45/247 (18%)
Query: 127 SPRFPGGPRPTLRMPSQPPAGLPG----SQPLLPGAMEPSPRAQGHPSMGGPM--QRVTP 180
+P PG P P PAG G S P P ++G P GP + T
Sbjct: 1045 APGHPGPPGPV------GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETG 1098
Query: 181 PRGMASV-GPQSYGGGMRPPPNSLAGPGLPAMNMG----PGVRGPWASPSGNSIPYSSSS 235
RG A + G + + G P + PG PA G PG GP P G S P
Sbjct: 1099 ERGAAGIKGHRGFPGN----PGAPGSPG-PAGQQGAIGSPGPAGP-RGPVGPSGPPGKDG 1152
Query: 236 PGSYTGPPGGGGP------------PGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF 283
+ GP G GP PG P P P + P G G A
Sbjct: 1153 TSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAP-------GPCCGGVGAAAI 1205
Query: 284 P-LGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAA 342
+G G A EP ++ + + ++ KS G + L + G+ ++
Sbjct: 1206 AGIGGEKAGGFAPYYGDEP--MDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCR 1263
Query: 343 AGTFLHP 349
F HP
Sbjct: 1264 DLKFCHP 1270
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 70.9 bits (172), Expect = 2e-12
Identities = 76/242 (31%), Positives = 89/242 (36%), Gaps = 48/242 (19%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P FPG P T R S G PG LPG +G P G PP G+
Sbjct: 546 PGFPGQPGMTGRAGSPGRDGHPG----LPGP-------KGSPGSVGLKGERGPPGGVGFP 594
Query: 188 GPQSYGGGMRPPPNSLAGP-------GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
G + G PP AGP G P PG+ GP P G +P
Sbjct: 595 GSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEP-GKIVPLP-------- 645
Query: 241 GPPGGGGPPGTPIMPSP-GD----STNSSENMYTIMNPIGQ-GAGRANFPLGPGPEGPMA 294
GPPG G PG+P P P GD T + +GQ G G FP PGP+G
Sbjct: 646 GPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIG---FPGPPGPKGVDG 702
Query: 295 AMSAMEPHHVNGSLGSGDMDGLP-----KSSPG-------AVAGLSNAPGTPRDDGEMAA 342
M P G G + G P K PG + GL PGTP + G +
Sbjct: 703 LPGDMGPPGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGV 762
Query: 343 AG 344
G
Sbjct: 763 PG 764
Score = 65.5 bits (158), Expect = 7e-11
Identities = 81/251 (32%), Positives = 96/251 (38%), Gaps = 47/251 (18%)
Query: 130 FPGGPRPTLRMPSQPPAGLPG--SQPLLPGA------MEPSPRAQGHPSM-GGPMQRVTP 180
FPG P S+ G PG P +PG+ M P P QG P + G P
Sbjct: 1175 FPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGP-PGPQGQPGLPGSPGHATEG 1233
Query: 181 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAM--------NMG----PGVRGPWASPSGNS 228
P+G GPQ G + P + PGLP + N G PGV GP P
Sbjct: 1234 PKG--DRGPQGQPG-LPGLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQG 1290
Query: 229 IPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG-QGA-GRANFPLG 286
+P SPG TG G GPPG P P + I G QG G P
Sbjct: 1291 MPGIGGSPG-ITGSKGDMGPPGVPGFQGP----KGLPGLQGIKGDQGDQGVPGAKGLPGP 1345
Query: 287 PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL-----PKSSPG--AVAGLSNAPGTPRDD-- 337
PGP GP + EP + G G + GL PK G + G+ PG P D
Sbjct: 1346 PGPPGPYDIIKG-EP-GLPGPEGPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGA 1403
Query: 338 ----GEMAAAG 344
GEM AG
Sbjct: 1404 PGQKGEMGPAG 1414
Score = 61.6 bits (148), Expect = 1e-09
Identities = 69/245 (28%), Positives = 88/245 (35%), Gaps = 29/245 (11%)
Query: 133 GPRPTLRMPSQPPA-GLPGSQPLLPGAMEP-SPRAQGHPSMGGPMQRVTPPRGMASVGPQ 190
GP+ + P A GLPG + + G P +P +G P + GP P + G +
Sbjct: 990 GPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEK 1049
Query: 191 SYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 250
G P + PGL G+ G SP S PG G PG G PG
Sbjct: 1050 GQAG-----PPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGM-PGSPGLKGSPG 1103
Query: 251 TPIMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 309
+ P SPG + ++ I G A P PGP GP + GS G
Sbjct: 1104 SVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAG 1163
Query: 310 SGDMDGLP-------------KSSPGAVA--GLSNAPGTPRDDGEMAAAGTFLHPFPSES 354
GLP K S G V GL+ +PG P GE G P
Sbjct: 1164 EKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGP-----PGPQ 1218
Query: 355 YSPGM 359
PG+
Sbjct: 1219 GQPGL 1223
Score = 59.7 bits (143), Expect = 4e-09
Identities = 85/284 (29%), Positives = 98/284 (34%), Gaps = 67/284 (23%)
Query: 108 PGDTMAAGSMAA-GFFQPFMSPRFPGGP-RPTLR----MPSQPPAGLPGSQPL-----LP 156
PG A G + GF P FPG P RP L QP G PG LP
Sbjct: 645 PGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLP 704
Query: 157 GAMEPSPRAQGHPSMGGPMQR--VTPPRGMASVGPQSYGG--------GMRPPPNSLAGP 206
G M P P G P G V +G VG G G S+ P
Sbjct: 705 GDMGP-PGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVP 763
Query: 207 GLPAMNMG---PGVRGPWASPSGNSIPYSSSSPG-------SYTGPPGGGGPPGTPIMPS 256
G+P + PG++G P +P S SPG GPPGG GPPG +
Sbjct: 764 GVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPG--LSGP 821
Query: 257 PGDSTNSSENMYTIMNPIGQGAGRANFP--LGPGPEGPMAAMSAMEPHHVNGSLGSGDMD 314
PG I G FP PGP+G A + G G +
Sbjct: 822 PG---------------IKGEKGFPGFPGLDMPGPKGDKGAQG------LPGITGQSGLP 860
Query: 315 GLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
GLP G PG P GEM GT P + SPG
Sbjct: 861 GLPGQQ-----GAPGIPGFPGSKGEMGVMGT-----PGQPGSPG 894
Score = 59.7 bits (143), Expect = 4e-09
Identities = 73/239 (30%), Positives = 92/239 (38%), Gaps = 48/239 (20%)
Query: 130 FPG--GPR--PTLRMPSQPPAGLPGSQPLLP----GAMEPSPRAQGHPSMGGPM----QR 177
FPG GPR P L+ + GLPG + G+M+ QG GP+ R
Sbjct: 910 FPGSSGPRGDPGLK-GDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSR 968
Query: 178 VTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
P G V + G P PG+ PG+ GP S G +P +PG
Sbjct: 969 GDP--GTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLP---GTPG 1023
Query: 238 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQG----------AGRANFPLGP 287
G PG GP G+P + PGD E P G G G A FP P
Sbjct: 1024 E-KGVPGIPGPQGSPGL--PGDKGAKGEKGQA--GPPGIGIPGLRGEKGDQGIAGFPGSP 1078
Query: 288 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G +G GS+G M G P K SPG+V G +PG P + G+ G
Sbjct: 1079 GEKGE------------KGSIGIPGMPGSPGLKGSPGSV-GYPGSPGLPGEKGDKGLPG 1124
Score = 53.9 bits (128), Expect = 2e-07
Identities = 72/273 (26%), Positives = 93/273 (34%), Gaps = 46/273 (16%)
Query: 128 PRFPG-----GPRPTLRMPSQP-PAGLPGS--QPLLPGAMEPSPRAQGHPSMGGPMQRVT 179
P PG GP + +P P GLPGS P +PG P A+G P GP
Sbjct: 763 PGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPG--ARGPPGGQGPPGLSG 820
Query: 180 PPRGMASVGPQSYGGGMRPPPNSLAG----PGLPAMNMGPGVRGPWASPSGNSIPYSSSS 235
PP G + G P P G PG+ + PG+ G +P P S
Sbjct: 821 PPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGE 880
Query: 236 PG--SYTGPPGGGGPPGTPIMPS-------PGDS-TNSSENMYTIMNPIG-----QGAGR 280
G G PG GP G P +P PG S + +G +
Sbjct: 881 MGVMGTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDK 940
Query: 281 ANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--------------PKSSPGAVAG 326
+ G +G + P GS G G+ PK PG ++G
Sbjct: 941 VDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPG-ISG 999
Query: 327 LSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
APG P G + G L P E PG+
Sbjct: 1000 TPGAPGLPGPKGSVGGMG--LPGTPGEKGVPGI 1030
Score = 50.8 bits (120), Expect = 2e-06
Identities = 72/270 (26%), Positives = 90/270 (33%), Gaps = 51/270 (18%)
Query: 122 FQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLL--PGAM--EPSPRAQGHPSMGGPMQR 177
F P P GP +P GLPG++ PGA +P G P GP
Sbjct: 62 FPGMQGPEGPQGPPGQKGDTGEP--GLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPG- 118
Query: 178 VTPPRGMASVGPQSYGGGMRPPP-NSLAG----PGLPAMNMGPG----------VRGPWA 222
PP G + G + PP AG PGLP M PG ++G
Sbjct: 119 --PPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERG 176
Query: 223 SPSGNSIPYSSSSPG--------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPI 274
P P PG +TGPPG GPPG P + + P
Sbjct: 177 FPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPP--------GEKGQMGLSFQGPK 228
Query: 275 G-QGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSN 329
G +G + P G + + G G G+P K PG G
Sbjct: 229 GDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGK-PGPRG 287
Query: 330 APGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
PG D GE + G FP E PG+
Sbjct: 288 KPGKDGDKGEKGSPG-----FPGEPGYPGL 312
Score = 50.4 bits (119), Expect = 2e-06
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 107 APGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ--PLLPGAMEPSPR 164
+PG T + G M F P+ G P Q G+PG++ P PG P
Sbjct: 1297 SPGITGSKGDMGPPGVPGFQGPK--GLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDI 1354
Query: 165 AQGHPSMGGPMQRVTPP--RGMASV-GPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRG 219
+G P + GP PP +G+ + GP+ G G+ P PG+P + PG +G
Sbjct: 1355 IKGEPGLPGPEG---PPGLKGLQGLPGPKGQQGVTGLVGIPGP---PGIPGFDGAPGQKG 1408
Query: 220 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP 252
P+G + P P G PG GPPGTP
Sbjct: 1409 EMG-PAGPTGPRGFPGPPGPDGLPGSMGPPGTP 1440
Score = 46.2 bits (108), Expect = 5e-05
Identities = 69/256 (26%), Positives = 79/256 (30%), Gaps = 57/256 (22%)
Query: 128 PRFPGGPRPTLRMPSQP-PAGLP----GSQPLLPGAM-EPSPRAQGHPSMGGPMQRVTPP 181
PR GP+ +P QP P GLP P PG E R S+ GP R P
Sbjct: 354 PRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLP 413
Query: 182 RGMASVGPQS---YGGGM---RP-PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSS 234
S GP Y G+ +P PP PG+P PG G
Sbjct: 414 GPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQ---PGFIGEIGEKGQKGESCLIC 470
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMA 294
Y GPPG GPP G FP PG +G
Sbjct: 471 DIDGYRGPPGPQGPP-----------------------------GEIGFPGQPGAKGDRG 501
Query: 295 AMSAMEPHHVNGSLGSGDMDGLP--KSSPGAV---------AGLSNAPGTPRDDGEMAAA 343
V G G+ + G P K PG G PG P G +
Sbjct: 502 LPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSP 561
Query: 344 GTFLHP-FPSESYSPG 358
G HP P SPG
Sbjct: 562 GRDGHPGLPGPKGSPG 577
Score = 44.7 bits (104), Expect = 1e-04
Identities = 56/215 (26%), Positives = 72/215 (33%), Gaps = 44/215 (20%)
Query: 141 PSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP 199
P +P P G PG + SP G P G + R P GP P
Sbjct: 280 PGKPGPRGKPGKDG--DKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPG-------P 330
Query: 200 PNSLAGPGLPAMNMG----PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP 255
P + G G P G PG GP P P + G PG GPPG P+
Sbjct: 331 PGIVIGTG-PLGEKGERGYPGTPGPRGEPG----------PKGFPGLPGQPGPPGLPVPG 379
Query: 256 S------PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 309
PG+ + + + G +GR P PG GP +P + NG +
Sbjct: 380 QAGAPGFPGERGEKGDRGFPGTSLPGP-SGRDGLPGPPGSPGPPG-----QPGYTNGIVE 433
Query: 310 SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
+ P G PG P GE+ G
Sbjct: 434 C-------QPGPPGDQGPPGIPGQPGFIGEIGEKG 461
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/119 (31%), Positives = 45/119 (37%), Gaps = 11/119 (9%)
Query: 143 QPPAGLPGSQPLLPGAMEPS-PRAQGHPSMGGPMQRVTPPRGMASV-GPQSYGGGMRPPP 200
Q P GLPG Q + + P A+G P GP +G + GP+ PP
Sbjct: 1316 QGPKGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEG-------PP 1368
Query: 201 NSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSP 257
GLP GV G P IP +PG GP G GP G P P P
Sbjct: 1369 GLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPTGPRGFPGPPGP 1427
Score = 38.9 bits (89), Expect = 0.007
Identities = 42/159 (26%), Positives = 50/159 (31%), Gaps = 34/159 (21%)
Query: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
G R P G P M G +GP P + G+ GPPG G PG P +
Sbjct: 49 GERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGT-RGPPGASGYPGNPGL 107
Query: 255 PS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDM 313
P PG G P PG G + P + G G+
Sbjct: 108 PGIPGQD------------------GPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGP 149
Query: 314 DGLP--KSSPGAV------------AGLSNAPGTPRDDG 338
GLP K PG + G PGTP G
Sbjct: 150 PGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPG 188
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 68.6 bits (166), Expect = 9e-12
Identities = 72/255 (28%), Positives = 95/255 (37%), Gaps = 44/255 (17%)
Query: 109 GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP-------PAGLPGSQPLLPGAMEP 161
G+ A G + ++ P GP + P P PAGLPG Q +L
Sbjct: 800 GEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVL------ 853
Query: 162 SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPW 221
QG P G PRG PP S+ GP P G G+ GP
Sbjct: 854 --NLQGPPGPPG-------PRG--------------PPGPSIPGPPGPRGPPGEGLPGPP 890
Query: 222 ASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGR 280
P + S+S +GPPG GPPG PG + E + G +
Sbjct: 891 GPPGS----FLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFG 946
Query: 281 ANFPLGPGPEGPMAAMSAMEPHHVNGSLG--SGDMDGLPKSSPGAVAGLSNAPGTPRDDG 338
N PGP GP V G+LG SG +G SS V+G PG P G
Sbjct: 947 LNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEG-GSSSTMYVSGPPGPPGPPGPPG 1005
Query: 339 EMAAAGTFLHPFPSE 353
++++G + + SE
Sbjct: 1006 SISSSGQEIQQYISE 1020
Score = 64.7 bits (156), Expect = 1e-10
Identities = 83/282 (29%), Positives = 99/282 (35%), Gaps = 35/282 (12%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQG 167
PG AAG P P PG P S P G PG P+ + G
Sbjct: 638 PGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPG--PVGLQGLRGEVGLPG 695
Query: 168 HPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGL--------PAMNMGP-G 216
GPM P GP+ G GMR P ++ PG P + GP G
Sbjct: 696 VKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRG 755
Query: 217 VRGPWASPSGNSIPYSSSSPG--SYTGPPGGGGPPGTPIMP-------SPGD-STNSSEN 266
+G P P S PG TGP G G PGTP P +PG T+ +
Sbjct: 756 EQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSS 815
Query: 267 MYTIMNPIGQ--GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGA 323
M T+ P G G P PGP GP E ++ G G G P S PG
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875
Query: 324 VA-------GLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
GL PG P ++ + TFL P PG
Sbjct: 876 PGPRGPPGEGLPGPPGPP--GSFLSNSETFLSGPPGPPGPPG 915
Score = 62.8 bits (151), Expect = 5e-10
Identities = 67/253 (26%), Positives = 83/253 (32%), Gaps = 38/253 (15%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 191
G P P + P GL G PG M P A G P G M P G Q
Sbjct: 704 GPPGPKGDQGEKGPRGLTGE----PG-MRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQG 758
Query: 192 YGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT--------- 240
G G+R PP PG P + G +G +P I +PG
Sbjct: 759 LTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLT 818
Query: 241 -----GPPGGGGPPGTPIMPSPGDSTN--SSENMYTIMNPIG----QGAGRANFPLGPGP 289
GPPG GPPG P P P + + + P G +G + P PGP
Sbjct: 819 VPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGP 878
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 349
GP P G +S ++G PG P G+ G H
Sbjct: 879 RGPPGEGLPGPP---------GPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGH- 928
Query: 350 FPSESYSPGMTMS 362
E PG + S
Sbjct: 929 -QGEQGLPGFSTS 940
Score = 58.9 bits (141), Expect = 7e-09
Identities = 63/191 (32%), Positives = 78/191 (40%), Gaps = 24/191 (12%)
Query: 128 PRFPGGPR-PTLRMPSQPPA-GLPGSQPLLPGAMEPSPRA-----QGHPSMGGPMQRVTP 180
PR P GP P P PP GLPG P PG+ + G P GP P
Sbjct: 864 PRGPPGPSIPGPPGPRGPPGEGLPGP-PGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGP 922
Query: 181 PR-----------GMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG-PGVRGPWASPSGNS 228
P G ++ G S+G ++ PP GP P + G PGV G PSG S
Sbjct: 923 PGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGP-PGPQGPKGDKGDPGVPGALGIPSGPS 981
Query: 229 IPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG- 286
SSS +GPPG GPPG P + S G + Y + I P G
Sbjct: 982 -EGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQGPPGP 1040
Query: 287 PGPEGPMAAMS 297
PGP GP+ ++
Sbjct: 1041 PGPPGPVTTIT 1051
Score = 50.1 bits (118), Expect = 3e-06
Identities = 75/257 (29%), Positives = 90/257 (35%), Gaps = 61/257 (23%)
Query: 132 GGPRPTLRMPSQPPAG---LPGSQPLLPGAM-EPSPRAQ-------GHPSMGGPMQRVTP 180
G P P M S P G PG+ P +PG + P P+ G P M GPM +
Sbjct: 567 GSPGPKGDMGSPGPKGDRGFPGT-PGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQ--- 622
Query: 181 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
RG GP G PP G G G GP P +P S GS +
Sbjct: 623 -RGRE--GPMGPRGEAGPP-----GSGEKGERGAAGEPGPHGPPG---VPGSVGPKGS-S 670
Query: 241 GPPGGGGPPGTPI--------------------MPSPGDSTNSSE----------NMYTI 270
G PG GPPG P+ M PG + E M +
Sbjct: 671 GSPGPQGPPG-PVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGL 729
Query: 271 MNPIGQ-GAGRANFPLGP-GPEGPMAAMSAMEPHHVNGSLG-SGDMDGLPKSSPGAVAGL 327
+G+ GA A P GP G +GP + G G SGD + P GL
Sbjct: 730 PGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGL 789
Query: 328 SNAPGTPRDDGEMAAAG 344
PG P GE A G
Sbjct: 790 PGTPGRPGIKGEPGAPG 806
Score = 36.2 bits (82), Expect = 0.047
Identities = 40/137 (29%), Positives = 49/137 (35%), Gaps = 39/137 (28%)
Query: 215 PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPI 274
PG +G SP GP G G PGTP +P P + +P
Sbjct: 569 PGPKGDMGSP----------------GPKGDRGFPGTPGIPGP------------LGHPG 600
Query: 275 GQGAGRANFPLG-PGPEGPMAAMSA---MEPHHVNGSLGSGDMDGLPKSSPGAVA--GLS 328
QG +G PG EGPM M P G GSG+ K GA G
Sbjct: 601 PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGE-----KGERGAAGEPGPH 655
Query: 329 NAPGTPRDDGEMAAAGT 345
PG P G ++G+
Sbjct: 656 GPPGVPGSVGPKGSSGS 672
Score = 35.0 bits (79), Expect = 0.10
Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 190 QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPP 249
+ Y G R PP PG A G + +A S + Y SSS G G PG GPP
Sbjct: 1101 RQYLMGPRGPPGP---PG--ASGDGSLLSLDYAELSSRILSYMSSS-GISIGLPGPPGPP 1154
Query: 250 GTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLG 309
G P S E + +++ +G+ PGP GP P +V S+
Sbjct: 1155 GLP--------GTSYEELLSLL----RGSEFRGIVGPPGPPGPPGI-----PGNVWSSIS 1197
Query: 310 SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
D+ SS AGLS PG P G G
Sbjct: 1198 VEDL-----SSYLHTAGLSFIPGPPGPPGPPGPRG 1227
Score = 35.0 bits (79), Expect = 0.10
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 215 PGVRGPWASPSGNSIPYSSSSPGS----YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 270
PG GP P + S GS GPPG GPPG +P S+ S E++ +
Sbjct: 1148 PGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPG---IPGNVWSSISVEDLSSY 1204
Query: 271 MNPIGQG--AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 328
++ G G P PGP GP A+ + S +SP + +
Sbjct: 1205 LHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIV 1264
Query: 329 NAPGTPRDDG 338
PG P G
Sbjct: 1265 GPPGPPGPQG 1274
Score = 33.1 bits (74), Expect = 0.40
Identities = 51/213 (23%), Positives = 76/213 (35%), Gaps = 29/213 (13%)
Query: 137 TLRMPSQP-PAGLPGSQ-----PLLPGA----MEPSPRAQGHPSMGGPMQRVTPPRGMAS 186
++ +P P P GLPG+ LL G+ + P G P + G V +
Sbjct: 1144 SIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPG---NVWSSISVED 1200
Query: 187 VGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT------ 240
+ + G+ P PG P PGV G A+ + + S SY
Sbjct: 1201 LSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVR 1260
Query: 241 -------GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAG-RANFPLGPGPEGP 292
GPPG GPPG + S S + + + + + +G+ ++ G G G
Sbjct: 1261 SFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAGS 1320
Query: 293 MAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA 325
+ A A G G D P GA A
Sbjct: 1321 LGAGGAF--GEAAGDRGPYGTDIGPGGGYGAAA 1351
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 279 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDG----LPKSSPGAVAGLSNAPGTP 334
G FP PG GP+ P GS+G M+G + P G + PG+
Sbjct: 582 GDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGS- 640
Query: 335 RDDGEMAAAGTFLHPFPSESYSPGMTMSV 363
+ GE AAG P PG+ SV
Sbjct: 641 GEKGERGAAGE-----PGPHGPPGVPGSV 664
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 68.2 bits (165), Expect = 1e-11
Identities = 80/253 (31%), Positives = 95/253 (37%), Gaps = 34/253 (13%)
Query: 128 PRFPGGPRP---TLRMPSQPPAGLPGSQ--PLLPGAMEPSPRAQGHPSMGG----PMQRV 178
P P GPR P +P G PG Q P LPG P P A G P + G P +R
Sbjct: 64 PPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGP--PGPSAVGKPGVPGLPGKPGER- 120
Query: 179 TPPRGMASVGPQSYGGGMRPP-PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
P VGP G PP P + GP ++ PG +GP +P P +PG
Sbjct: 121 GPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPG 180
Query: 238 -----SYTGPPGGGGP--PGTPIMPSPGDSTNSSENMYTIMNPIGQGA-GRANFPLGPGP 289
G G G P PG +P P T S P G G G P PG
Sbjct: 181 VPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPS-------GPPGVGKRGENGVPGQPGI 233
Query: 290 EGPMA---AMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTF 346
+G M + P G G +G+ K PGA AG PG P G A G
Sbjct: 234 KGDRGFPGEMGPIGPPGPQGPPGERGPEGIGK--PGA-AGAPGQPGIPGTKGLPGAPGIA 290
Query: 347 LHPFPSESYSPGM 359
P P PG+
Sbjct: 291 GPPGPPGFGKPGL 303
Score = 63.9 bits (154), Expect = 2e-10
Identities = 77/248 (31%), Positives = 88/248 (35%), Gaps = 49/248 (19%)
Query: 107 APGDTMAAGSM----AAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPS 162
APG G+ A G P P F P L+ + PAGLPG PGA
Sbjct: 271 APGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLK-GERGPAGLPGG----PGAKGE- 324
Query: 163 PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMR-PPPNSLAGPGLPAMNMGPGVRGPW 221
QG + G PP M GP+ G P P GP PA PG +G
Sbjct: 325 ---QGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGY--PGAKGER 379
Query: 222 ASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSP-GDSTNSSENMYTIMNPIGQGAGR 280
SP S PG Y G PG GP G P +P P GD G
Sbjct: 380 GSPG------SDGKPG-YPGKPGLDGPKGNPGLPGPKGD------------------PGV 414
Query: 281 ANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS----SPGAVAGLSNAPGTPRD 336
P PGP GP A P H NG G G+P + P + G + G P
Sbjct: 415 GGPPGLPGPVGPAGAKGM--PGH-NGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGS 471
Query: 337 DGEMAAAG 344
G AG
Sbjct: 472 PGPPGPAG 479
Score = 60.5 bits (145), Expect = 2e-09
Identities = 82/284 (28%), Positives = 97/284 (34%), Gaps = 74/284 (26%)
Query: 131 PGGPRPTLRMPSQPPA-------GLPGSQPL-----LPGAMEP--SPRAQGHPSMGGPMQ 176
PG PT PS PP G+PG + PG M P P QG P GP +
Sbjct: 205 PGPQGPT--GPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGP-E 261
Query: 177 RVTPPRGMASVG----------PQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG 226
+ P + G P + G P P PGLP + G RGP P G
Sbjct: 262 GIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLK---GERGPAGLPGG 318
Query: 227 NSIPYSSSSPG-----SYTGPPGGGGP------PGTPIMPSPGDSTNSSENMYTIMNPIG 275
G TGPPG GP PG+ +P P T + P G
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPA-------GPAG 371
Query: 276 -QGA----------GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP------- 317
GA G+ +P PG +GP P G G G GLP
Sbjct: 372 YPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGP---KGDPGVGGPPGLPGPVGPAG 428
Query: 318 -KSSPG--AVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
K PG AG APG P G + G + FP PG
Sbjct: 429 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPG--IPGFPGSKGDPG 470
Score = 56.2 bits (134), Expect = 4e-08
Identities = 60/190 (31%), Positives = 77/190 (40%), Gaps = 35/190 (18%)
Query: 147 GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP-PNSLAG 205
G PG PG P +GHP GP + G S G Q G PP P+++
Sbjct: 60 GTPGP----PGPAGP----RGHPGPSGPPGKP----GYGSPGLQGEPGLPGPPGPSAVGK 107
Query: 206 PGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSE 265
PG+P + PG RGP+ P G+ P G PG GPPG P +P P + +
Sbjct: 108 PGVPGLPGKPGERGPYG-PKGDVGP---------AGLPGPRGPPGPPGIPGPAGISVPGK 157
Query: 266 NMYTIMNPIGQGAGRANFPLG-PGPEGP--MAAMSAMEPHHVNGSLGSGDMDGLPKSSPG 322
P QG A P G PG +G + M+ + G+ G GLP P
Sbjct: 158 -------PGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLP--GPQ 208
Query: 323 AVAGLSNAPG 332
G S PG
Sbjct: 209 GPTGPSGPPG 218
Score = 55.1 bits (131), Expect = 1e-07
Identities = 48/140 (34%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQ--------PLLPGAMEPSPRA--QGHPSMGGPMQR 177
P +PG +P L P P GLPG + P LPG + P+ GH GP
Sbjct: 388 PGYPG--KPGLDGPKGNP-GLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGA 444
Query: 178 VTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSS 235
P +GP G G + P S PG PA G+ GP P G P S
Sbjct: 445 PGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPG-PAGIATKGLNGP-TGPPGPPGPRGHSG 502
Query: 236 PGSYTGPPGGGGPPGTPIMP 255
GPPG GPPG +MP
Sbjct: 503 EPGLPGPPGPPGPPGQAVMP 522
Score = 47.8 bits (112), Expect = 2e-05
Identities = 58/189 (30%), Positives = 65/189 (34%), Gaps = 52/189 (27%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ--------------P 153
PG T G+M G P P G P P PAG PG++ P
Sbjct: 334 PGLTGPPGNM--GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYP 391
Query: 154 LLPGAMEPS-----PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGP-G 207
PG P P +G P +GGP P VGP G P N AGP G
Sbjct: 392 GKPGLDGPKGNPGLPGPKGDPGVGGP------PGLPGPVGPAGAKG--MPGHNGEAGPRG 443
Query: 208 LPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY-------------------TGPPGGGGP 248
P + PG RGP P P S PGS GPPG G
Sbjct: 444 APGI---PGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGH 500
Query: 249 PGTPIMPSP 257
G P +P P
Sbjct: 501 SGEPGLPGP 509
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 67.8 bits (164), Expect = 1e-11
Identities = 79/259 (30%), Positives = 90/259 (34%), Gaps = 41/259 (15%)
Query: 131 PGGPRPTLRMPSQP---PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
PG P P S+ P+GLPGS PG P P QG + G + P
Sbjct: 1176 PGPPGPQAEKGSEGIRGPSGLPGS----PGPPGP-PGIQGPAGLDGLDGKDGKPGLRGDP 1230
Query: 188 GPQSYGGGMRPP--PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSY-----T 240
GP G M PP PGLP G GP P P + PG+
Sbjct: 1231 GPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGP---PGSTGRPGAEGEPGAMGPQGRP 1287
Query: 241 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME 300
GPPG GPPG P P P S+ + G+ G A P PGP G
Sbjct: 1288 GPPGHVGPPGPPGQPGPAGI--SAVGLKGDRGATGE-RGLAGLPGQPGPPGHPGPPGEPG 1344
Query: 301 PHHVNGSLGSGDMDGL-----PKSSPGAVA--------GLSNAPGTPRDDGEM------A 341
G G G PK PGA G + PG P G M
Sbjct: 1345 TDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPG 1404
Query: 342 AAGTFLHP-FPSESYSPGM 359
AG HP P S SPG+
Sbjct: 1405 PAGERGHPGAPGPSGSPGL 1423
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/265 (28%), Positives = 96/265 (36%), Gaps = 49/265 (18%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPR----------PTLRMPSQPPAGLPGSQPLLPG 157
PGD G+ + P GP+ P+L+ AG PG QP G
Sbjct: 690 PGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPG-QPGPKG 748
Query: 158 AMEPSPRAQGHPSMGGP--MQRVTPPRGMASVG--PQSYGGGMRPPPNSLAGPGLPAMNM 213
E P G P G + V P G+ V P G G++ P PGLP +
Sbjct: 749 --EQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQG 806
Query: 214 GPGVRGPWASPSGNSIPYSSSSPG-----SYTGPPGG--GGPPG-------TPIMPSPGD 259
PG RGP P+G + SPG GPPG GPPG T + +PG+
Sbjct: 807 LPGPRGP-PGPTGEK--GAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGE 863
Query: 260 -------------STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 306
S S ++ P G + PGP+GP P V G
Sbjct: 864 KGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGS-SWQPGPQGPPGIPGPPGPPGVPG 922
Query: 307 SLGSGDMDGLPKSSPGAVAGLSNAP 331
G +GLP PG A L + P
Sbjct: 923 LQGVPGNNGLP-GQPGLTAELGSLP 946
Score = 54.7 bits (130), Expect = 1e-07
Identities = 52/189 (27%), Positives = 63/189 (33%), Gaps = 24/189 (12%)
Query: 162 SPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP--PNSLAGPGLPAMNMGPGVRG 219
SP G P + G PP S GP G + PP P ++ PGLP + G RG
Sbjct: 1019 SPGLPGPPGLPGQRGEEGPPGMRGSPGPP---GPIGPPGFPGAVGSPGLPGLQ---GERG 1072
Query: 220 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAG 279
P PG PG GPPG P + T S+ P +G
Sbjct: 1073 LTGLTGDKGEPGPPGQPGY----PGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGL- 1127
Query: 280 RANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPR 335
PGP GP P +G G G P P G +PG P
Sbjct: 1128 -------PGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPG 1180
Query: 336 DDGEMAAAG 344
E + G
Sbjct: 1181 PQAEKGSEG 1189
Score = 54.7 bits (130), Expect = 1e-07
Identities = 70/247 (28%), Positives = 80/247 (32%), Gaps = 53/247 (21%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQ--PLLPGAM-------------EPSPRAQ----GHPSMG 172
G P P P QP G PG+ P LPG EP P G P
Sbjct: 1081 GEPGP----PGQP--GYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPA 1134
Query: 173 GPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIP 230
GP P G Q + G G PP PG P PG GP A I
Sbjct: 1135 GPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP---PGFPGKVGSPGPPGPQAEKGSEGIR 1191
Query: 231 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
S G PG GPPG P + P ++ + G+ PGP
Sbjct: 1192 GPS-------GLPGSPGPPGPPGIQGPAG-----------LDGLDGKDGKPGLRGDPGPA 1233
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 350
GP M P G G + G PK G G + G P +GE A G P
Sbjct: 1234 GPPGLMG---PPGFKGKTGHPGLPG-PKGDCGK-PGPPGSTGRPGAEGEPGAMGPQGRPG 1288
Query: 351 PSESYSP 357
P P
Sbjct: 1289 PPGHVGP 1295
Score = 52.4 bits (124), Expect = 6e-07
Identities = 64/232 (27%), Positives = 77/232 (33%), Gaps = 54/232 (23%)
Query: 146 AGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAG 205
AGLPG QP PG P G P G + PP G Q + G PP
Sbjct: 1325 AGLPG-QPGPPG----HPGPPGEPGTDGAAGKEGPP------GKQGFYG----PPGPKGD 1369
Query: 206 PGLPAMNMGPGVRGPWASP-----SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMP----S 256
PG G +G P SG+ P P G PG GP G+P +P S
Sbjct: 1370 PGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGS 1429
Query: 257 PGDSTNSSENMYTIMNPI--------GQGAGRANFPL----------GPGPEGPMAAMSA 298
GD N E I I R FP+ PG +G A
Sbjct: 1430 MGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGA 1489
Query: 299 MEPHHVNGSLGSGDMDGLP--KSSPG----------AVAGLSNAPGTPRDDG 338
+ G +G GLP + PG +AG + PG P G
Sbjct: 1490 PGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQG 1541
Score = 46.6 bits (109), Expect = 3e-05
Identities = 60/238 (25%), Positives = 82/238 (34%), Gaps = 29/238 (12%)
Query: 145 PAGLPGSQPLL-------PGAMEPSPRAQGHPSMGGPMQRVTPPRGMAS----VGPQSYG 193
P+GLPGS G ++ P G G + V P+G VGP+
Sbjct: 388 PSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEIC-VIGPKGQKGDPGFVGPEGLA 446
Query: 194 GGMRPPPNSLAGP---GLPAMNMGPG-VRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPP 249
G P P L GP GLP PG GP + IP PG G PG G
Sbjct: 447 G--EPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIP-GKEGPGGKPGKPGVKGEK 503
Query: 250 GTP--IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGP--------MAAMSAM 299
G P + P+ + + + P G+ PG +G ++ S +
Sbjct: 504 GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVV 563
Query: 300 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
H+ S G+ G P + G + PG + G AG P P P
Sbjct: 564 GAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGP 621
Score = 46.6 bits (109), Expect = 3e-05
Identities = 54/184 (29%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 181 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT 240
PR + G S G P + PGLP PG RG P P
Sbjct: 1000 PRAEEARGDNSEGD-----PGCVGSPGLPGPPGLPGQRGEEGPPGMRGSP---------- 1044
Query: 241 GPPGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
GPPG GPPG P + SPG E T + G P PG GP
Sbjct: 1045 GPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIK 1104
Query: 300 EPHHVNGSLGSGDMDGLPKS----SPGAVAGLSNAPGTPRDDGEMAAAGTFLHP-FPSES 354
GS G G P S P AG G + GE G P FP
Sbjct: 1105 GERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPP 1164
Query: 355 YSPG 358
PG
Sbjct: 1165 GPPG 1168
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/240 (25%), Positives = 82/240 (34%), Gaps = 36/240 (15%)
Query: 128 PRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRA----QGHP-----SMGGPMQR 177
P P G + + +P +P P G PG +P +P + +G P S+ G
Sbjct: 511 PTLPEGFQNFVGLPGKPGPKGEPGDP--VPARGDPGIQGIKGEKGEPCLSCSSVVGAQHL 568
Query: 178 VTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
V+ VG +G PGLP PG++G + G + P S P
Sbjct: 569 VSSTGASGDVGSPGFGL-----------PGLPGRAGVPGLKGEKGN-FGEAGPAGSPGPP 616
Query: 238 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG---PGPEGPMA 294
GP G G G P P P S ++ + P G P G PG +G
Sbjct: 617 GPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAG 676
Query: 295 AMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA--GLSNAPGTPRDDGEMAAAGTFLHPFPS 352
+ G G G P +PG GLS PG G G PS
Sbjct: 677 ERG------LKGQKGDAGNPGDP-GTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPS 729
Score = 43.1 bits (100), Expect = 4e-04
Identities = 72/281 (25%), Positives = 90/281 (32%), Gaps = 64/281 (22%)
Query: 131 PGGPRPTLRMPSQPPA--GLPGSQPLLPGAMEPSPR----AQGHPSMGGPMQRVTPPRGM 184
PG P ++ P P GLPG Q L P P AQG P + G V PP G
Sbjct: 782 PGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPP-GA 840
Query: 185 ASVGPQSYGG-----GMRPPPNSLAG-----------------------PGLPAMNMG-- 214
+ GP G G+R P PG P + MG
Sbjct: 841 SVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSS 900
Query: 215 --PGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMY-TIM 271
PG +GP P P PG G PG G PG P + + S +++ +I
Sbjct: 901 WQPGPQGPPGIPGPPGPP---GVPG-LQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSIC 956
Query: 272 NPIGQG-------------AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPK 318
QG G P PG + ++E + G +
Sbjct: 957 GDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNS-----E 1011
Query: 319 SSPGAVA--GLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
PG V GL PG P GE G P P P
Sbjct: 1012 GDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGP 1052
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/196 (28%), Positives = 63/196 (32%), Gaps = 51/196 (26%)
Query: 126 MSPRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPR-------------------- 164
M P P GP P P P+G PG P +PG+M
Sbjct: 1397 MGPVGPPGPAGERGHPGAPGPSGSPGL-PGVPGSMGDMVNYDEIKRFIRQEIIKMFDERM 1455
Query: 165 AQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAM-----NMG-PGVR 218
A M PM+ P G G P + PGLP G PGVR
Sbjct: 1456 AYYTSRMQFPMEMAAAPGRPGPPGKDGAPGR----PGAPGSPGLPGQIGREGRQGLPGVR 1511
Query: 219 G-PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQG 277
G P I + GPPG GPPG M + G P+GQ
Sbjct: 1512 GLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATG--------------PMGQ- 1556
Query: 278 AGRANFPLGPGPEGPM 293
P PGP GPM
Sbjct: 1557 ---QGIPGIPGPPGPM 1569
Score = 33.5 bits (75), Expect = 0.31
Identities = 39/135 (28%), Positives = 51/135 (37%), Gaps = 24/135 (17%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQ 190
PG P P + + G PGS P LPG + R QG P + RG+ G +
Sbjct: 1472 PGRPGPPGKDGAPGRPGAPGS-PGLPGQIGREGR-QGLPGV----------RGLP--GTK 1517
Query: 191 SYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 250
G + G G+ N PG GP P + ++ P G PG GPPG
Sbjct: 1518 GEKGDI--------GIGIAGENGLPGPPGPQGPPGYGKM--GATGPMGQQGIPGIPGPPG 1567
Query: 251 TPIMPSPGDSTNSSE 265
P N S+
Sbjct: 1568 PMGQPGKAGHCNPSD 1582
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/266 (29%), Positives = 91/266 (34%), Gaps = 64/266 (24%)
Query: 113 AAGSMAAGFFQPF----MSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGH 168
AAG + QP + P F G L MP PLLP ++ P G
Sbjct: 35 AAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPL----------PLLPMDLKGEPGPPGK 84
Query: 169 PSMGGPMQRVTPP-----RGMASVGPQSYGGGMRPP-------------PNSLAGPGLPA 210
P GP PP GM G G PP P + PG P
Sbjct: 85 PGPRGP---PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPG 141
Query: 211 MNMGPGVRGPWA-----------SPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPS-PG 258
+ PG+RG PSG +IP + G GPPG G PG P PG
Sbjct: 142 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQG-VPGPPGFQGEPGPQGEPGPPG 200
Query: 259 DSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPK 318
D +N G G+ P PG G P LG +DGLP
Sbjct: 201 DRGLKGDN----------GVGQPGLPGAPGQGGAPGPPGLPGP----AGLGKPGLDGLP- 245
Query: 319 SSPGAVAGLSNAPGTPRDDGEMAAAG 344
+PG G S PG P GE A G
Sbjct: 246 GAPGD-KGESGPPGVPGPRGEPGAVG 270
Score = 63.9 bits (154), Expect = 2e-10
Identities = 81/267 (30%), Positives = 97/267 (36%), Gaps = 58/267 (21%)
Query: 128 PRFPGGP---RPTLRMPSQP-PAGLPG-------SQPLLPGAMEP--SPRAQGHPSMGGP 174
P FPG P +P L QP PAG PG P LPG + P P +G P + G
Sbjct: 94 PGFPGKPGMGKPGLH--GQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGD 151
Query: 175 MQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSS 234
PP GP G + P + PG P PG +G P + +
Sbjct: 152 QGLRGPPGPPGLPGPS--GITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNG 209
Query: 235 --SPGSYTGPPGGGGPPGTPIMP---------------SPGDSTNSSENMYTIMNPIGQ- 276
PG G PG GG PG P +P +PGD S + P G+
Sbjct: 210 VGQPG-LPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPP--GVPGPRGEP 266
Query: 277 GAGRANFPLG------------PGPEGPMAAM---SAMEPHHVNGSLGSGDMDGLP---- 317
GA P G PGP+GP A P + G G G M GLP
Sbjct: 267 GAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYG-MPGLPGPKG 325
Query: 318 KSSPGAVAGLSNAPGTPRDDGEMAAAG 344
P V GL G P +DGE G
Sbjct: 326 DRGPAGVPGLLGDRGEPGEDGEPGEQG 352
Score = 57.0 bits (136), Expect = 3e-08
Identities = 78/258 (30%), Positives = 92/258 (35%), Gaps = 40/258 (15%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL 154
AA P P S A G+ G G P PG P P + PAG+PG L
Sbjct: 285 AAGLPGPQGPSGAKGEPGTRGP--PGLIGP-TGYGMPGLPGPK---GDRGPAGVPG---L 335
Query: 155 LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 214
L EP G P GP PP S G G P P AGPG P
Sbjct: 336 LGDRGEPGE--DGEPGEQGPQGLGGPPGLPGSAGLPGRRGP--PGPKGEAGPGGPPGV-- 389
Query: 215 PGVRGPWASPSGNS----IPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYT 269
PG+RG PSG + +P PG++ GPPG GP G P PG
Sbjct: 390 PGIRGD-QGPSGLAGKPGVPGERGLPGAH-GPPGPTGPKGEPGFTGRPGGPG-------- 439
Query: 270 IMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP---------KSS 320
+ +GQ G P PG GP P G G + G P ++
Sbjct: 440 VAGALGQ-KGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAG 498
Query: 321 PGAVAGLSNAPGTPRDDG 338
AG + PG P G
Sbjct: 499 EPGTAGPTGPPGVPGSPG 516
Score = 56.2 bits (134), Expect = 4e-08
Identities = 77/278 (27%), Positives = 89/278 (32%), Gaps = 81/278 (29%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL---- 154
P P PGD G G P PG P + + P GLPG L
Sbjct: 190 PGPQGEPGPPGDRGLKGDNGVG------QPGLPGAPG---QGGAPGPPGLPGPAGLGKPG 240
Query: 155 ---LPGAMEPS--------PRAQGHPSMGGP-----MQRVTPPRGMASVGPQSYGG---- 194
LPGA P +G P GP + V P GPQ G
Sbjct: 241 LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE 300
Query: 195 -GMRPPPNSLA--GPGLPAMNMGPGVRGPWASPS---GNSIPYSSSSPGSYTGPPGGGGP 248
G R PP + G G+P + G RGP P P PG GP G GGP
Sbjct: 301 PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQ-GPQGLGGP 359
Query: 249 PGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSL 308
PG P G A P GP GP G
Sbjct: 360 PGLP--------------------------GSAGLPGRRGPPGP------------KGEA 381
Query: 309 GSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G G G+P + G +GL+ PG P + G A G
Sbjct: 382 GPGGPPGVPGIRGDQGP-SGLAGKPGVPGERGLPGAHG 418
Score = 53.5 bits (127), Expect = 3e-07
Identities = 59/202 (29%), Positives = 72/202 (35%), Gaps = 24/202 (11%)
Query: 145 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLA 204
P GLPGS LPG P P +G GG P G+ + G+ P
Sbjct: 359 PPGLPGSAG-LPGRRGP-PGPKGEAGPGG-------PPGVPGIRGDQGPSGLAGKPGVPG 409
Query: 205 GPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 264
GLP + PG GP P P G+ G G G PG P + P +
Sbjct: 410 ERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGA-LGQKGDLGLPGQPGLRGP----SGI 464
Query: 265 ENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 324
+ PIG G PG GP A EP G+ G G+P S
Sbjct: 465 PGLQGPAGPIGP-QGLPGLKGEPGLPGPPGEGRAGEP----GTAGPTGPPGVPGS----- 514
Query: 325 AGLSNAPGTPRDDGEMAAAGTF 346
G++ PG P G A G F
Sbjct: 515 PGITGPPGPPGPPGPPGAPGAF 536
Score = 51.6 bits (122), Expect = 1e-06
Identities = 46/131 (35%), Positives = 51/131 (38%), Gaps = 26/131 (19%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQ 190
PGGP + + GLPG PG PS G P + GP +GPQ
Sbjct: 435 PGGPGVAGALGQKGDLGLPGQ----PGLRGPS----GIPGLQGPA---------GPIGPQ 477
Query: 191 SYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 250
G P L GP PG GP P +P SPG TGPPG GPPG
Sbjct: 478 GLPGLKGEP--GLPGPPGEGRAGEPGTAGPTGPPG---VP---GSPG-ITGPPGPPGPPG 528
Query: 251 TPIMPSPGDST 261
P P D T
Sbjct: 529 PPGAPGAFDET 539
Score = 33.5 bits (75), Expect = 0.31
Identities = 35/122 (28%), Positives = 39/122 (31%), Gaps = 2/122 (1%)
Query: 230 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP 289
P PG GPPG G PG P M PG + +G+ AG P GP
Sbjct: 79 PGPPGKPGP-RGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGK-AGPPGLPGKVGP 136
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 349
G G G GLP S + G A G P G G P
Sbjct: 137 PGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEP 196
Query: 350 FP 351
P
Sbjct: 197 GP 198
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 66.6 bits (161), Expect = 3e-11
Identities = 73/254 (28%), Positives = 90/254 (35%), Gaps = 46/254 (18%)
Query: 126 MSPRFPGGPR-----PTLRMPSQPPAGL--PGS-----------QPLLPG-AMEPSPRAQ 166
M P P GPR P P PP G+ PG+ +P LPG P P+ +
Sbjct: 1248 MGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGE 1307
Query: 167 -GHPSMGGPMQRVTPP--RG-------MASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPG 216
G GP PP +G S GP + G PP PG + PG
Sbjct: 1308 RGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGE----PGPAGQDGPPG 1363
Query: 217 VRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ 276
+G P P + PG +GPPG GPPG P P ++ + P G+
Sbjct: 1364 DKGDDGEPGQTGSPGPTGEPGP-SGPPGKRGPPG-PAGPEGRQGEKGAKGEAGLEGPPGK 1421
Query: 277 GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS-SPGAVAGLSNAPGTPR 335
GP GP A P + G G GLP S P G PG P
Sbjct: 1422 ----------TGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPG 1471
Query: 336 DDGEMAAAGTFLHP 349
G+ G HP
Sbjct: 1472 LKGDSGPKGEKGHP 1485
Score = 59.3 bits (142), Expect = 5e-09
Identities = 68/213 (31%), Positives = 79/213 (37%), Gaps = 27/213 (12%)
Query: 128 PRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMAS 186
P G P PT +P P+G PG + PG P R QG G PP
Sbjct: 1371 PGQTGSPGPT----GEPGPSGPPGKRGP-PGPAGPEGR-QGEKGAKGEAGLEGPPGKTGP 1424
Query: 187 VGPQSYGGGMRPPPNSLAG----------PGLPAMNMGPGVRGPWASPS--GNSIPYSSS 234
+GPQ G +P P+ L G PG P + PG GP P G+S P
Sbjct: 1425 IGPQGAPG--KPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEK 1482
Query: 235 S-PG--SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEG 291
PG GPPG G G +P P S+ I P G G P PGP G
Sbjct: 1483 GHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQ-GITGPSGP-IGPPGPPGLPGPPG 1540
Query: 292 PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAV 324
P A + P G G G P PG V
Sbjct: 1541 PKGAKGSSGPTGPKGEAGHPGPPG-PPGPPGEV 1572
Score = 58.9 bits (141), Expect = 7e-09
Identities = 76/284 (26%), Positives = 93/284 (32%), Gaps = 36/284 (12%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPS----QPPAGLPGSQ-P 153
P P + +PG+ AG+ P+ P GP P Q PAG G Q P
Sbjct: 1080 PGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGP 1139
Query: 154 L-LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRP--PPNSLAGPGLPA 210
+ LPG P G P G + P S G + G P P + PG
Sbjct: 1140 VGLPGPAGPV----GPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSG 1195
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 270
+ PG RG G P + GPPG G G P P T M
Sbjct: 1196 ADGEPGPRGQ----QGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPP 1251
Query: 271 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP------------- 317
P +G A P GP+GP + G G GLP
Sbjct: 1252 GPPGPRGPSGA--PGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERG 1309
Query: 318 ---KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
+S P AG G P DDG + G FP + PG
Sbjct: 1310 EKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV--GFPGDPGPPG 1351
Score = 58.5 bits (140), Expect = 9e-09
Identities = 69/240 (28%), Positives = 83/240 (34%), Gaps = 55/240 (22%)
Query: 128 PRFPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P +PG GP+ ++ P P A PG +P PR Q P+ GP P
Sbjct: 873 PGYPGRQGPKGSIGFPGFPGANGEKGGRGTPG--KPGPRGQRGPT--GPRGERGPRGITG 928
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGG 245
GP+ GG P AGP PG RGP P G P + GP G
Sbjct: 929 KPGPKGNSGGDGP-----AGP--------PGERGP-NGPQG---------PTGFPGPKGP 965
Query: 246 GGPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHV 304
GPPG +P PG G F GP GP + P
Sbjct: 966 PGPPGKDGLPGHPGQ------------------RGETGFQGKTGPPGPPGVVGPQGPTGE 1007
Query: 305 NGSLGSGDMDGLPKSSPG--AVAGLSNAPGTPRDDGEMAAAG----TFLHPFPSESYSPG 358
G +G G P PG + GL+ GT D G G L FP + PG
Sbjct: 1008 TGPMGERGHPG-PPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPG 1066
Score = 58.2 bits (139), Expect = 1e-08
Identities = 71/238 (29%), Positives = 84/238 (35%), Gaps = 48/238 (20%)
Query: 130 FPGGPRPTLRMPSQPPAGLPGS-----QPLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRG 183
FPG P P P G G Q PG P PR G P GP PP G
Sbjct: 1220 FPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP--PGPRGPSGAPGADGPQG---PPGG 1274
Query: 184 MASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPW-----ASPSGNSIPYSSSSPGS 238
+ + G G + P PGLP PG +G + PSG + P P
Sbjct: 1275 IGNPGAV----GEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPG 1330
Query: 239 YTGPPGGGGPPGTPIMPS-------------PGDSTNSSENMYTIMNPIGQGAGRANFPL 285
GP G GP G P P PGD + E T +P G + P
Sbjct: 1331 DDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQT-GSPGPTGEPGPSGPP 1389
Query: 286 G----PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDG 338
G PGP GP G+ G ++G P K+ P G APG P DG
Sbjct: 1390 GKRGPPGPAGPEGRQGE------KGAKGEAGLEGPPGKTGP---IGPQGAPGKPGPDG 1438
Score = 57.0 bits (136), Expect = 3e-08
Identities = 54/180 (30%), Positives = 69/180 (38%), Gaps = 29/180 (16%)
Query: 101 PVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAME 160
P+ APG G G P PG P P P GLPG L G
Sbjct: 1424 PIGPQGAPGKPGPDG--LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPG----LKGDSG 1477
Query: 161 PSPRAQGHPSMGGPMQRVTPP--------RGMASVGPQSYGG-----GMRPPPNSLAGPG 207
P +GHP + G + PP RG+ GPQ G G+ P + PG
Sbjct: 1478 PKGE-KGHPGLIG---LIGPPGEQGEKGDRGLP--GPQGSSGPKGEQGITGPSGPIGPPG 1531
Query: 208 LPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENM 267
P + PG +G G+S P + GPPG GPPG I P P ++ + N+
Sbjct: 1532 PPGLPGPPGPKGA----KGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRNI 1587
Score = 53.5 bits (127), Expect = 3e-07
Identities = 70/271 (25%), Positives = 89/271 (32%), Gaps = 49/271 (18%)
Query: 126 MSPRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGM 184
+ P+ P G + P P G PG Q L PG + +G P G + PP
Sbjct: 999 VGPQGPTGETGPMGERGHPGPPGPPGEQGL-PG-LAGKEGTKGDPGPAGLPGKDGPP--- 1053
Query: 185 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPG 244
G + + G R P + GL PG GP SP G P ++ P G PG
Sbjct: 1054 ---GLRGFPGD-RGLPGPVGALGLKGNEGPPGPPGPAGSP-GERGPAGAAGPIGIPGRPG 1108
Query: 245 GGGPPGT-----------PIMPSPGDSTNSSENMYTIMNPIG-QGAGRANFPLG------ 286
GPPG P P+ D + P+G G +G
Sbjct: 1109 PQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKG 1168
Query: 287 ----------PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--------PKSSPG--AVAG 326
PGP GP + P +G G GL P+ PG G
Sbjct: 1169 SKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVG 1228
Query: 327 LSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
L PG P + GE G P P P
Sbjct: 1229 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1259
Score = 52.4 bits (124), Expect = 6e-07
Identities = 72/259 (27%), Positives = 84/259 (32%), Gaps = 58/259 (22%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPL--------LPGAMEPS-----------PRAQGHPSM 171
P GPR P PAG PG + +PG P P +GH
Sbjct: 590 PQGPRGVQGPPG--PAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGD 647
Query: 172 GGPMQRVTPP-----RGM-ASVGPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGV 217
GP PP RG VGP+ G G + PP PG+ M+ PG
Sbjct: 648 PGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGP 707
Query: 218 RG---PWASPS-----GNSIPYSSSSPGSYTGPPGGGGP---PGTPIMPSPGDSTNSSEN 266
+G P P GN P GPPG GP PG P MP
Sbjct: 708 KGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGK 767
Query: 267 MYTIMNPIGQGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA 325
GQG P+G PGP G A + G+ G DG P
Sbjct: 768 EGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGI---RGLKGTKGEKGEDGFP-------- 816
Query: 326 GLSNAPGTPRDDGEMAAAG 344
G G D GE+ G
Sbjct: 817 GFKGDMGIKGDRGEIGPPG 835
Score = 47.4 bits (111), Expect = 2e-05
Identities = 67/251 (26%), Positives = 83/251 (33%), Gaps = 41/251 (16%)
Query: 133 GPRPTLRMPSQP-PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPM-----QRVTPPRG-MA 185
GP+ + P + P G PG P +PGA P GHP GP Q P+G +
Sbjct: 733 GPQGAIGPPGEKGPLGKPGL-PGMPGADGPP----GHPGKEGPPGEKGGQGPPGPQGPIG 787
Query: 186 SVGPQSYGG-----GMRPPPNSLAGPGLPAMNMGPGVRGPWAS-----PSGNSIPYSSSS 235
GP+ G G++ G P G++G P G P
Sbjct: 788 YPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKG 847
Query: 236 PGSYTGPPGGGGPP------GTPIMPS-PG-DSTNSSENMYTIMNPIGQGAGRANFPLGP 287
G G PG GPP G P +P PG S G+ GR P
Sbjct: 848 RGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGT----P 903
Query: 288 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
G GP P G G G PK + G G + PG +G G
Sbjct: 904 GKPGPRGQRGPTGPRGERGPRGITGKPG-PKGNSGG-DGPAGPPGERGPNGPQGPTG--- 958
Query: 348 HPFPSESYSPG 358
FP PG
Sbjct: 959 --FPGPKGPPG 967
Score = 47.0 bits (110), Expect = 3e-05
Identities = 73/259 (28%), Positives = 88/259 (33%), Gaps = 46/259 (17%)
Query: 121 FFQPFMSPRF--PGGP--RPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQ 176
++ P SP PG P + T+ P G G Q P +EP +G P GP
Sbjct: 420 YYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEKG-QKGEPAIIEPGMLIEGPPGPEGPAG 478
Query: 177 RVTPPRGMASVGPQSYGGGMRPP--PNSLAGPGLP----AMNMGP---------GVRGPW 221
PP M G G PP P GLP M M P G +GP
Sbjct: 479 LPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM 538
Query: 222 ASPSGNSIP----------YSSSSPGSYTGPPGGGGPPGT-PIMPSPGDSTNSSENMYTI 270
S + + P TG PG GPPG+ + PGD + +
Sbjct: 539 VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDV--GPQGPRGV 596
Query: 271 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA----- 325
P G AG+ PG G + A G G DGL PG
Sbjct: 597 QGPPGP-AGK------PGRRGRAGSDGARGMPGQTGPKGDRGFDGL-AGLPGEKGHRGDP 648
Query: 326 GLSNAPGTPRDDGEMAAAG 344
G S PG P DDGE G
Sbjct: 649 GPSGPPGPPGDDGERGDDG 667
Score = 42.4 bits (98), Expect = 7e-04
Identities = 48/180 (26%), Positives = 59/180 (32%), Gaps = 34/180 (18%)
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 247
GP+ G P ++ PG+ + PG GP P P + P G PG G
Sbjct: 447 GPRGEKGQKGEP--AIIEPGM-LIEGPPGPEGPAGLPG----PPGTMGPTGQVGDPGERG 499
Query: 248 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP-------------------- 287
PPG P +P M +M P G G GP
Sbjct: 500 PPGRPGLPGADGLPGPPGTM--LMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLAL 557
Query: 288 -GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKS-SPGAVAGLSNAPGTPRDDGEMAAAGT 345
GP GPM P G GSG + G P P G+ PG G AG+
Sbjct: 558 RGPAGPMGLTGRPGP---VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGS 614
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 65.1 bits (157), Expect = 9e-11
Identities = 60/208 (28%), Positives = 77/208 (37%), Gaps = 22/208 (10%)
Query: 141 PSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPP---RGMASVGPQSYGGGMR 197
P+ P G PG+ P EP P + P GGP QR PP R + GP +R
Sbjct: 75 PAAPAEGAPGAAP------EPPPAGRARPGGGGP-QRPGPPSPRRPLVPAGPAPPAAKLR 127
Query: 198 PPPNSLAG-----PGLPAMNMG--PGVRGPWASPSGNSIPYSSSSPGSYTGP-PGGGGPP 249
PPP AG P A+ G P GP A P+G + + + PG GP PG G P
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGP-AKPAGPAALAARAGPGPGPGPGPGPGPGP 186
Query: 250 GTPIMPSPGDSTNSSE---NMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNG 306
G P P + N S N + P L P P+ P V
Sbjct: 187 GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGA 246
Query: 307 SLGSGDMDGLPKSSPGAVAGLSNAPGTP 334
+ P ++P A + P P
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Score = 58.5 bits (140), Expect = 9e-09
Identities = 70/258 (27%), Positives = 100/258 (38%), Gaps = 28/258 (10%)
Query: 94 SAAAAPSPVMG---SMAPGDTMAAGSMAAGFFQ---PFMSPRFPGGPRPTLRMPSQPPAG 147
+A A P P G PG AG AA ++ P +L + + P A
Sbjct: 167 AARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL-VNNGPAAL 225
Query: 148 LPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGP- 206
LP +P PG + +P G + P +PP A P + P P +LA P
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAP-SPPAAPAPAAPAAAPPPPPPAPATLARPP 284
Query: 207 GLPA--MNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG---TPIMPSPGDST 261
G PA P V P A+ +G S + + + GP G G PG P+PG
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKA 344
Query: 262 NSSENMYTIMNPI-------GQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMD 314
S + + P G + A+ +GP +G + + +A+ P G
Sbjct: 345 ESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPP------APGTPT 398
Query: 315 GLPKSSPGAVA-GLSNAP 331
GLPK + GAV LS P
Sbjct: 399 GLPKGAAGAVTQSLSRTP 416
Score = 56.2 bits (134), Expect = 4e-08
Identities = 76/272 (27%), Positives = 92/272 (33%), Gaps = 37/272 (13%)
Query: 84 SGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQ 143
+G A + AA P G PG G G P P P GP P
Sbjct: 73 AGPAAPAEGAPGAAPEPPPAGRARPG---GGGPQRPGPPSP-RRPLVPAGPAPPAAKLRP 128
Query: 144 PPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSL 203
PP G GS +P A + A P+ GP + P A GP G G P P
Sbjct: 129 PPEGSAGSCAPVPAAAAVA--AGPEPAPAGPAKPAGPAALAARAGP---GPGPGPGPGPG 183
Query: 204 AGPGLPAMNMGPGVR----------------GPWASPSGNS----IPYSS-SSPGSY--T 240
GPG PA GPG P S N +P ++PG+ T
Sbjct: 184 PGPGKPA---GPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQT 240
Query: 241 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME 300
P G P P PSP + + P A A P P GP A A+
Sbjct: 241 PPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPP--GHPAGPPTAAPAVP 298
Query: 301 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPG 332
P + GS P + G AG+S PG
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG 330
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 65.1 bits (157), Expect = 9e-11
Identities = 78/260 (30%), Positives = 96/260 (36%), Gaps = 40/260 (15%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPA----GLPGSQ--PLLPGAMEP 161
PG+ A G M + R P GP P QP + G G + P PG E
Sbjct: 550 PGNKGAKGDMVVSRVKGHKGERGPDGPPG---FPGQPGSHGRDGHAGEKGDPGPPGDHED 606
Query: 162 S-PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGP 220
+ P +G P GP + P VGP G G PP PG+P PGVRGP
Sbjct: 607 ATPGGKGFPGPLGPPGKAGP------VGPP--GLGFPGPPGERGHPGVPGH---PGVRGP 655
Query: 221 --WASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA 278
G++I + + PG + GPPG GPPG P P + S + P
Sbjct: 656 DGLKGQKGDTISCNVTYPGRH-GPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRP--GTP 712
Query: 279 GRANFPLGPGPEGPMA--------AMSAMEPHHVNGSLGSGDMDGLPKS------SPGAV 324
G A P PG G M S + P GS G G+P P
Sbjct: 713 GTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGK 772
Query: 325 AGLSNAPGTPRDDGEMAAAG 344
GLS PG G+ G
Sbjct: 773 RGLSGVPGIKGPRGDPGCPG 792
Score = 61.6 bits (148), Expect = 1e-09
Identities = 79/241 (32%), Positives = 96/241 (39%), Gaps = 35/241 (14%)
Query: 131 PGGPRPTLRMPSQPPAGLPG--------SQPLLPGAMEPS--PRAQGHPSMGGPMQRVTP 180
PG P P S G PG P L G + P P +GHP G P VTP
Sbjct: 304 PGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHP--GPPGVLVTP 361
Query: 181 PRGMASVG-----PQSYG--GGMRPP--PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPY 231
P + P YG G + PP P L PG M G GP P +P
Sbjct: 362 PLPLKGPPGDPGFPGRYGETGDVGPPGPPGLLGRPGEACAGM-IGPPGPQGFPGLPGLPG 420
Query: 232 SSSSPGSYTGPPGGGGPPGTPIMP-SPG--DSTNSSENMYTIMNPIGQG-AGRANFPLGP 287
+ PG PG G PG+P +P +PG SS ++ NP QG G+ P G
Sbjct: 421 EAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGR 480
Query: 288 GPEGPMA--AMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVAGLSNAPGTPRDDGEMAAA 343
GP+G + A EP G +G GLP + S G + GL GT D G A
Sbjct: 481 GPKGEKGNEGLCACEP----GPMGPPGPPGLPGRQGSKGDL-GLPGWLGTKGDPGPPGAE 535
Query: 344 G 344
G
Sbjct: 536 G 536
Score = 60.5 bits (145), Expect = 2e-09
Identities = 63/232 (27%), Positives = 75/232 (32%), Gaps = 37/232 (15%)
Query: 145 PAGLPG-----SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP 199
P G+PG P PG P PR + PP S GP G
Sbjct: 1202 PVGIPGLKGERGDPGSPGISPPGPRG-----------KKGPPGPPGSSGPPGPAGATGRA 1250
Query: 200 PNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGD 259
P + PG P PG GP +P +P S G G GPPG P P P
Sbjct: 1251 PKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPG 1310
Query: 260 STNSSENMYTIMNPIGQGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL-- 316
P G P+G PGP+GP + G G GL
Sbjct: 1311 YKGF---------PGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPG 1361
Query: 317 PKSSPG---------AVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
P+ PG + GL APG +G M G P PG+
Sbjct: 1362 PRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGL 1413
Score = 59.3 bits (142), Expect = 5e-09
Identities = 68/235 (28%), Positives = 85/235 (36%), Gaps = 37/235 (15%)
Query: 124 PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG-----AMEPSPRAQGHPSMGGPMQRV 178
PF PG P P + P GLPG P PG E P A+G P G M +
Sbjct: 892 PFGDDGLPGPPGP------KGPRGLPGF-PGFPGERGKPGAEGCPGAKGEPGEKG-MSGL 943
Query: 179 TPPRGM----ASVGPQSYGGGMR--PPPNSLAGPGLPAMNMGPGVRGPWASPS---GNSI 229
RG+ ++GP G M + PG P + PG RG +P
Sbjct: 944 PGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGE 1003
Query: 230 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP 289
P PG + G PG G PG P P P ST G FP PG
Sbjct: 1004 PGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGL--------------RGFIGFPGLPGD 1049
Query: 290 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
+G + ++G+ G G P S G G PG+P G A+G
Sbjct: 1050 QGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGP-PGPKGEPGSPGCPGHFGASG 1103
Score = 58.5 bits (140), Expect = 9e-09
Identities = 74/253 (29%), Positives = 93/253 (36%), Gaps = 34/253 (13%)
Query: 109 GDTMAAGSMAAGFFQPFMSPRFPG--GPRPTLRMPSQPPAGLPGSQPL--LPGAMEPS-- 162
GD G + P P PG G + P+ G PG + L +PG P
Sbjct: 728 GDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGD 787
Query: 163 ---PRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSL--AGPGLPAMNMGPGV 217
P A+G + G + + P+G G + G PP +S PG+P PG
Sbjct: 788 PGCPGAEGPAGIPGFLG-LKGPKGRE--GHAGFPGVPGPPGHSCERGAPGIPGQPGLPGY 844
Query: 218 RGPWASPSGNSIPYSSSSPG--------SYTGPPGGGGPPGTPIMPSP-GDSTNSSENMY 268
G +P G P PG G PG GPPG P +P P GD + +
Sbjct: 845 PGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGD-----DGLP 899
Query: 269 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 328
P G G FP PG G A G G M GLP + G
Sbjct: 900 GPPGPKGP-RGLPGFPGFPGERGKPGAEGC---PGAKGEPGEKGMSGLP--GDRGLRGAK 953
Query: 329 NAPGTPRDDGEMA 341
A G P D+GEMA
Sbjct: 954 GAIGPPGDEGEMA 966
Score = 54.7 bits (130), Expect = 1e-07
Identities = 65/224 (29%), Positives = 76/224 (33%), Gaps = 34/224 (15%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 158
P P S PG A G P P G P P + P GLPGS LL G
Sbjct: 1232 PGPPGSSGPPGPAGATGRAPKDIPDPG-PPGDQGPPGPDGPRGAPGPPGLPGSVDLLRG- 1289
Query: 159 MEPSPRAQGHPSMGGPMQRVTPP--RGMASV-------GPQSYGGGMRP-----PPNSLA 204
P G P GP PP +G GP + G P PP
Sbjct: 1290 ---EPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKG 1346
Query: 205 GPGLPAMNMGPGVRGPWASPSGNS-------IPYSSSSPG-----SYTGPPGGGGPPGTP 252
PG P G+ GP P + IP +PG G PG GP G
Sbjct: 1347 LPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPG 1406
Query: 253 IMPSPG-DSTNSSENMYTIMNPIGQ--GAGRANFPLGPGPEGPM 293
PG D + + P G+ G +P GPGP GP+
Sbjct: 1407 CKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPGPI 1450
Score = 54.3 bits (129), Expect = 2e-07
Identities = 72/271 (26%), Positives = 94/271 (34%), Gaps = 33/271 (12%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPR--PTLRMPSQPPA-----GLPGSQPLLPGA-- 158
PG G AG P FPG P +P +P + G PGS P LPGA
Sbjct: 390 PGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGS-PGLPGAPG 448
Query: 159 MEPSPRAQ------GHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMN 212
++ P + G+P G +V PP G G + G P + PG
Sbjct: 449 LQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPG----- 503
Query: 213 MGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDSTNSSENMYTIM 271
PG+ G S +P + G GPPG GPPG P + G N ++
Sbjct: 504 -PPGLPGRQGSKGDLGLPGWLGTKGD-PGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVV 561
Query: 272 NPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAP 331
+ + G GP+GP H +G G G P A G P
Sbjct: 562 SRVKGHKGER------GPDGPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFP 615
Query: 332 ---GTPRDDGEMAAAGTFLHPFPSESYSPGM 359
G P G + G P E PG+
Sbjct: 616 GPLGPPGKAGPVGPPGLGFPGPPGERGHPGV 646
Score = 52.0 bits (123), Expect = 8e-07
Identities = 59/222 (26%), Positives = 72/222 (32%), Gaps = 26/222 (11%)
Query: 128 PRFPGGPRPTLRMPSQP-PAGLPGSQPLLPGAMEPS-PRAQGHPSMGGPMQRVTPPRGMA 185
P F G P P P G PGS L P P QG P GP P
Sbjct: 1010 PGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGP------PGFSG 1063
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGS--YTGPP 243
G + G P + PG PG G + + +P GS GPP
Sbjct: 1064 IDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPP 1123
Query: 244 GGGGPPGTP-------IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAM 296
G GPPG P + PG+ + P G G P PG +GP +
Sbjct: 1124 GSSGPPGCPGDHGMPGLRGQPGEMGDP--------GPRGL-QGDPGIPGPPGIKGPSGSP 1174
Query: 297 SAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG 338
H + G G+ GL P G+ G D G
Sbjct: 1175 GLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPG 1216
Score = 50.4 bits (119), Expect = 2e-06
Identities = 66/247 (26%), Positives = 80/247 (32%), Gaps = 24/247 (9%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGG-PMQRVTPPRGMAS 186
P FPG T + P GL G M P QG P + G P + P R ++
Sbjct: 372 PGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSA 431
Query: 187 VGPQSYGG--GMRPPPNSLAGPGLPAM-----NMGP-GVRGPWASPSGNSIPYSSSSPGS 238
G G G+ P PG + N GP G++G P G + G
Sbjct: 432 PGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGL 491
Query: 239 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG-------PGPEG 291
PG GPPG P +P S + G A P G GP G
Sbjct: 492 CACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLPGKHGASGPPG 551
Query: 292 PMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
A M V G G DG P G PG+ DG G P
Sbjct: 552 NKGAKGDMVVSRVKGHKGERGPDGPP--------GFPGQPGSHGRDGHAGEKGDPGPPGD 603
Query: 352 SESYSPG 358
E +PG
Sbjct: 604 HEDATPG 610
Score = 47.0 bits (110), Expect = 3e-05
Identities = 61/226 (26%), Positives = 79/226 (34%), Gaps = 34/226 (15%)
Query: 145 PAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPM-QRVTP--PRGMASVGPQSYGGGMRPP 199
P G+PG L +PG P P +G P M G R P P G ++GP GG
Sbjct: 111 PTGVPGFPGLDGIPGHPGP-PGPRGKPGMSGHNGSRGDPGFPGGRGALGP----GGPLGH 165
Query: 200 PNSLAGPGLPAMNMGP--GVRGPWASPSGNSIPYS-----SSSPGSYTGPPGGGGPPGTP 252
P G +G G++G P +P S + P Y G PG GPPG P
Sbjct: 166 PGEKGEKGNSVFILGAVKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQP 225
Query: 253 IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGD 312
P NP G+ P G +G +EP G
Sbjct: 226 GRPGLKG------------NPGVGVKGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKG 273
Query: 313 MDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
+ G+P + GL PG + G A + FP PG
Sbjct: 274 IKGIP-----GMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPG 314
Score = 43.5 bits (101), Expect = 3e-04
Identities = 49/146 (33%), Positives = 55/146 (37%), Gaps = 26/146 (17%)
Query: 120 GFFQPFMSPRFPGGPRPTLRMPSQP----PAGLPG--SQPLLPGAMEPSPRAQGHPSMGG 173
GF P FPG P +P P P GLPG +P P ++ PR G P G
Sbjct: 1328 GFPGPQGPHGFPGPPGEK-GLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLP--GA 1384
Query: 174 PMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPY 231
P R GP+ G GMR P +GPG G RG P P
Sbjct: 1385 PGMR----------GPEGAMGLPGMRGP----SGPGCKGEPGLDGRRGVDGVPGSPGPPG 1430
Query: 232 SSSSPGSYTGPPGGGGPPGTPIMPSP 257
G G PGG GPPG P P
Sbjct: 1431 RKGDTGE-DGYPGGPGPPGPIGDPGP 1455
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
G + P L PG ++ G+RG P G + P G PG G PG P
Sbjct: 71 GPQGPIGPLGAPGPIGLSGEKGMRGD-RGPPGAAGDKGDKGPTGVPGFPGLDGIPGHPGP 129
Query: 255 PSPGDSTNSSENMYTIMN---PIGQGAGRANFPLG-PGPEG----PMAAMSAMEPHHVNG 306
P P S + + + P G+GA PLG PG +G + + A++ + G
Sbjct: 130 PGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGEKGNSVFILGAVK--GIQG 187
Query: 307 SLGSGDMDGLPKS-SPGAVAGLSNAPGTP 334
G + GLP S G AG + PG P
Sbjct: 188 DRGDPGLPGLPGSWGAGGPAGPTGYPGEP 216
Score = 35.8 bits (81), Expect = 0.062
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 128 PRFPGGP-RPTLRMPSQPPAGLPGSQ-PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
PR PG P P +R P + GLPG + P PG + P G + G PP
Sbjct: 1376 PRIPGLPGAPGMRGP-EGAMGLPGMRGPSGPGC-KGEPGLDGRRGVDGVPGSPGPPGRKG 1433
Query: 186 SVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRG 219
G Y GG PP + PG GPG G
Sbjct: 1434 DTGEDGYPGG-PGPPGPIGDPG--PKGFGPGYLG 1464
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 284 PLGPGPEGPMAAMSAMEPHHVNGSLG-SGDMDGLPKSSPGAVA-----GLSNAPGTPRDD 337
P PGP+GP+ + A P ++G G GD + PGA G + PG P D
Sbjct: 67 PGPPGPQGPIGPLGAPGPIGLSGEKGMRGD-----RGPPGAAGDKGDKGPTGVPGFPGLD 121
Query: 338 GEMAAAGTFLHPFPSESYSPGMT 360
G G P PGM+
Sbjct: 122 GIPGHPGP-----PGPRGKPGMS 139
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 64.7 bits (156), Expect = 1e-10
Identities = 85/303 (28%), Positives = 104/303 (34%), Gaps = 70/303 (23%)
Query: 96 AAAPSPVMGSMAPGDTMAAGSM----AAGFFQPFMSPRF-PGGPRPTLRMPSQP------ 144
A P P+ APG A GS A GF P + R P GP P P
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAGPPGATGF--PGAAGRVGPPGPSGNAGPPGPPGPAGKE 904
Query: 145 ----------PAGLPGSQ----PLLPGAMEPSPRAQGH---PSMGGPMQRVTPPRGMASV 187
PAG PG P P + SP A G P GP Q + RG+ +
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP-QGIAGQRGVVGL 963
Query: 188 ----GPQSYGGGMRPP-------PNSLAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSS 235
G + + G P P+ +G P MGP G+ GP P + S
Sbjct: 964 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS 1023
Query: 236 PG-----------SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF- 283
PG TGP G G PG P P P + P G+ R
Sbjct: 1024 PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGP-------------VGPAGKSGDRGETG 1070
Query: 284 PLGP-GPEGPMAAMSAMEPHHVNGSLG-SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMA 341
P GP GP GP+ A P G G +G+ +GL PG P GE
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130
Query: 342 AAG 344
+G
Sbjct: 1131 PSG 1133
Score = 63.5 bits (153), Expect = 3e-10
Identities = 87/301 (28%), Positives = 102/301 (33%), Gaps = 48/301 (15%)
Query: 94 SAAAAPSPVMGSMA-PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPA------ 146
+ AA P+ G+ PG A G+ F R P GP+ P PP
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQG----PGGPPGPKGNSG 434
Query: 147 --GLPGSQPLLPGAMEPSP-RAQGHPSMGGPM----QRVTP-PRGMASVGPQSYGGGMR- 197
G PGS+ EP P QG P G R P P G+ + G G R
Sbjct: 435 EPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRG 494
Query: 198 -PPPNSLAGPGLPAMNMG-PGVRGPWASPSGNSIPYSSSSPGSY--------------TG 241
P + +AGP PA G PG GP SP P + PG+ TG
Sbjct: 495 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 554
Query: 242 PPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQG-----AGRANFPLGPGPEGPM--- 293
PPG G G P P P + P G AG P PG GP
Sbjct: 555 PPGPAGQDGRPGPPGP-PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD 613
Query: 294 AAMSAMEPHHVNGSLGSGDMDGLPKSSPG--AVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
A P G G G P SPG + G + PG GE G P P
Sbjct: 614 GEAGAQGPPGPAGPAGERGEQG-PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 672
Query: 352 S 352
S
Sbjct: 673 S 673
Score = 63.5 bits (153), Expect = 3e-10
Identities = 80/270 (29%), Positives = 95/270 (35%), Gaps = 32/270 (11%)
Query: 94 SAAAAPSPVMGSMAPGDTMAAGSMA-AGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPG-- 150
S A P+ G APGD G AGF P + PG ++ AG PG
Sbjct: 787 SGPAGPTGARG--APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 844
Query: 151 --SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGL 208
+ P P +P A+G GP P VGP G PP GP
Sbjct: 845 GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP--GPPGPAG 902
Query: 209 PAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENM 267
GP G GP P G P P G PG GP G P P P
Sbjct: 903 KEGGKGPRGETGPAGRP-GEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP----QGIAGQ 957
Query: 268 YTIMNPIGQGAGRANFPLGPGP------EGPMAAMSAMEPHHVNGSLGSGDMDGLP---- 317
++ GQ G FP PGP +GP A P G +G + G P
Sbjct: 958 RGVVGLPGQ-RGERGFPGLPGPSGEPGKQGPSGASGERGP---PGPMGPPGLAGPPGESG 1013
Query: 318 -KSSPGAVA--GLSNAPGTPRDDGEMAAAG 344
+ +PGA G +PG D GE AG
Sbjct: 1014 REGAPGAEGSPGRDGSPGAKGDRGETGPAG 1043
Score = 62.8 bits (151), Expect = 5e-10
Identities = 72/259 (27%), Positives = 84/259 (32%), Gaps = 28/259 (10%)
Query: 98 APSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 157
AP P G T AAG G P P FPG Q P G G Q +
Sbjct: 315 APGPAGARGNDGATGAAGP--PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV--- 369
Query: 158 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 217
+G P GP P G Q G P PG P G
Sbjct: 370 --------RGEPGPPGPAG-AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP 420
Query: 218 RGPWASPSGNSIPYSSSSPGSY--TGPPGGGGPPGTPIMPSPGD-----STNSSENMYTI 270
+GP P +PGS TG G GP G P P +
Sbjct: 421 QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Query: 271 MNPIGQ--GAGRANFPLG---PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVA 325
P G+ G G FP GP+GP + P GS G G PGA
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG-EAGLPGA-K 538
Query: 326 GLSNAPGTPRDDGEMAAAG 344
GL+ +PG+P DG+ G
Sbjct: 539 GLTGSPGSPGPDGKTGPPG 557
Score = 62.0 bits (149), Expect = 8e-10
Identities = 77/257 (29%), Positives = 96/257 (37%), Gaps = 42/257 (16%)
Query: 104 GSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSP 163
GS +P D G PR P GP P + G+PG QP LPG P P
Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAGP------PGRD--GIPG-QPGLPGPPGP-P 147
Query: 164 RAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWA 222
G P +GG P+ +S GG P P +GP GLP PG +G +
Sbjct: 148 GPPGPPGLGGNF----APQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG-FQ 202
Query: 223 SPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRAN 282
P G PG+ +GP G GPPG PG + + E AG+
Sbjct: 203 GPPG-----EPGEPGA-SGPMGPRGPPG-----PPGKNGDDGE------------AGKPG 239
Query: 283 FPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA-VAGLSNAPGTPRDDGEMA 341
P GP GP A + G G GL + A AG PG+P ++G
Sbjct: 240 RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG 299
Query: 342 AAGTFLHPFPSESYSPG 358
G P E PG
Sbjct: 300 QMGP--RGLPGERGRPG 314
Score = 58.5 bits (140), Expect = 9e-09
Identities = 71/237 (29%), Positives = 81/237 (34%), Gaps = 13/237 (5%)
Query: 130 FPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP 189
FPG P P+ Q P+G G + PG M P P G P G R P S G
Sbjct: 972 FPGLPGPSGEPGKQGPSGASGERGP-PGPMGP-PGLAGPPGESG---REGAPGAEGSPGR 1026
Query: 190 QSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGG 247
G G R PG P PG GP A SG+ + P GP G G
Sbjct: 1027 DGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGP-AGKSGDRGETGPAGPAGPVGPVGARG 1085
Query: 248 PPGTPIMPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVN 305
P G P P + I G G P PG +GP A P
Sbjct: 1086 PAG-PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP 1144
Query: 306 GSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMTMS 362
GS G+ DGL PG + G G D G + G P P S G S
Sbjct: 1145 GSAGAPGKDGL-NGLPGPI-GPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFS 1199
Score = 58.2 bits (139), Expect = 1e-08
Identities = 66/249 (26%), Positives = 83/249 (33%), Gaps = 20/249 (8%)
Query: 107 APGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQ 166
APG + A G + P P GPR P A P PG+ + +P Q
Sbjct: 669 APGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS-QGAPGLQ 727
Query: 167 GHPSMGGPMQRVTPPRGMASVGPQSYGGGM-RPPPNSLAGPGLPAMNMGPGVRGPWASPS 225
G P G P GP+ G + L GP +GP GP +P
Sbjct: 728 GMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP------IGPP--GPAGAPG 779
Query: 226 --GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANF 283
G S P + P G PG G PG P + P GA
Sbjct: 780 DKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 839
Query: 284 PLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP----KSSPGAVAGLSNAPGTPR 335
P GP GP GP+ + A GS G G P + P +G + PG P
Sbjct: 840 PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPG 899
Query: 336 DDGEMAAAG 344
G+ G
Sbjct: 900 PAGKEGGKG 908
Score = 55.8 bits (133), Expect = 6e-08
Identities = 79/276 (28%), Positives = 96/276 (34%), Gaps = 53/276 (19%)
Query: 108 PGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGS--------QPLLPGAM 159
PG A G GF P P PG P M + P G PG +P PG
Sbjct: 190 PGPPGAPGPQ--GFQGPPGEPGEPGASGP---MGPRGPPGPPGKNGDDGEAGKPGRPGER 244
Query: 160 -EPSPR-AQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 217
P P+ A+G P G + + RG + + G P PG P N PG
Sbjct: 245 GPPGPQGARGLPGTAG-LPGMKGHRGFSGLDGAKGDAGPAGPKGE---PGSPGENGAPGQ 300
Query: 218 RGPWASPSGNSIPYSSSSPGS--------YTGPPGGGGPPGTPIMPSPGDSTNSSENMYT 269
GP P P + G+ GPPG GP G P P + +
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG---- 356
Query: 270 IMNPIGQGAGRANFPLG----PGPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGA 323
QG + P G PGP GP A G G+ DG P K + GA
Sbjct: 357 -----PQGPRGSEGPQGVRGEPGPPGPAGAA---------GPAGNPGADGQPGAKGANGA 402
Query: 324 VAGLSNAPGTPRDDGEMAAAGTFLHPFP-SESYSPG 358
G++ APG P G G P P S PG
Sbjct: 403 -PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG 437
Score = 54.7 bits (130), Expect = 1e-07
Identities = 53/167 (31%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL 154
A AP PV + GD G P P GP + ++ PAG G +
Sbjct: 1050 APGAPGPVGPAGKSGDRGETGPAG---------PAGPVGP-----VGARGPAGPQGPRGD 1095
Query: 155 LPGAMEPSPRA-QGHPSMGGPMQRVTPPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAM 211
E R +GH G PP GP G G R PP S PG +
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGL 1155
Query: 212 NMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPG 258
N PG GP P G + + P GPPG GPPG P PS G
Sbjct: 1156 NGLPGPIGP-PGPRGRT---GDAGP---VGPPGPPGPPGPPGPPSAG 1195
Score = 54.3 bits (129), Expect = 2e-07
Identities = 77/284 (27%), Positives = 91/284 (32%), Gaps = 47/284 (16%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGG----PRPTLRMPSQPPAGLPG 150
A P P PG+ GS P+ P G P P S AG PG
Sbjct: 471 ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530
Query: 151 SQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPA 210
L PGA + G P GP + PP GP G RP P PG P
Sbjct: 531 EAGL-PGAKGLT----GSPGSPGPDGKTGPP------GPAGQDG--RPGP-----PGPPG 572
Query: 211 MNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 270
GV G + P G + + GPPG GP G D ++
Sbjct: 573 ARGQAGVMG-FPGPKGAAGEPGKAGERGVPGPPGAVGPAGK-------DGEAGAQGPPGP 624
Query: 271 MNPIGQG-----AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGL--------- 316
P G+ AG F PGP GP V G LG+ G
Sbjct: 625 AGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGE 684
Query: 317 -PKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM 359
P AG A G P +DG AG P +PG+
Sbjct: 685 RGVQGPPGPAGPRGANGAPGNDGAKGDAGA--PGAPGSQGAPGL 726
Score = 49.7 bits (117), Expect = 4e-06
Identities = 63/203 (31%), Positives = 73/203 (35%), Gaps = 39/203 (19%)
Query: 144 PPAGLPGSQ--PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPN 201
P A +P + P+ P E SP Q + GP + T PRG P+ G PP
Sbjct: 82 PGAEVPEGECCPVCPDGSE-SPTDQETTGVEGP-KGDTGPRG-----PRGPAG----PPG 130
Query: 202 SLAGPGLPAMNMGPGVRGPWASPS--GNSIP-----YSSSSPG--SYTGPPGGGGPPGTP 252
PG P + PG GP P GN P Y S G S GP G GP G P
Sbjct: 131 RDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP 190
Query: 253 IMP-SPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSG 311
P +PG P G+ P PG GPM P NG G
Sbjct: 191 GPPGAPGPQ--------GFQGPPGE-------PGEPGASGPMGPRGPPGPPGKNGDDGEA 235
Query: 312 DMDGLP-KSSPGAVAGLSNAPGT 333
G P + P G PGT
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGT 258
Score = 49.3 bits (116), Expect = 5e-06
Identities = 73/272 (26%), Positives = 82/272 (30%), Gaps = 48/272 (17%)
Query: 95 AAAAPSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPL 154
AA P PG A G P P GP Q PAG PG Q L
Sbjct: 588 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG--ERGEQGPAGSPGFQGL 645
Query: 155 LPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMG 214
PG P P G P G P + + GP G G P
Sbjct: 646 -PGPAGP-PGEAGKPGEQGV------PGDLGAPGPSGARGER----------GFPGERGV 687
Query: 215 PGVRGPWASPSGNSIPYSSSSPGSYTGP--PGGGGPPGTPIMPS-------PG------- 258
G GP N P + + G P PG G PG MP PG
Sbjct: 688 QGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGD 747
Query: 259 ------DSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGD 312
D + + + + PIG G A P G GP P G+ G
Sbjct: 748 AGPKGADGSPGKDGVRGLTGPIGP-PGPAGAPGDKGESGPSGPAG---PTGARGAPGDRG 803
Query: 313 MDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G P P AG A G P GE AG
Sbjct: 804 EPGPP--GPAGFAGPPGADGQPGAKGEPGDAG 833
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 64.7 bits (156), Expect = 1e-10
Identities = 73/263 (27%), Positives = 91/263 (34%), Gaps = 50/263 (19%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPG-----SQPLLPGAMEPSPRAQ-------------GHP 169
P PG P P P G PG P PG E PR Q G P
Sbjct: 1159 PGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPG--EGGPRGQDGAKGDRGEDGEPGQP 1216
Query: 170 SMGGPMQRVTPPRGMASVGP--------QSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGP 220
GP PP + GP + G G + P ++ PG GP G GP
Sbjct: 1217 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG----KTGPVGPAGP 1272
Query: 221 WASPSGNSIPYSSSSPGSY--------TGPPGGGGPPGTPIMPSPGDSTNSSEN----MY 268
P + + S G GPPG GPPG P + GD+ E +
Sbjct: 1273 AGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR--GDAGAKGEKGHPGLI 1330
Query: 269 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 328
++ P G+ + + L PGP+G M +G +G G GLP P G
Sbjct: 1331 GLIGPPGEQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLP--GPAGPKGAK 1387
Query: 329 NAPGTPRDDGEMAAAGTFLHPFP 351
A G GE G HP P
Sbjct: 1388 GATGPGGPKGEKGVQGPPGHPGP 1410
Score = 58.9 bits (141), Expect = 7e-09
Identities = 62/221 (28%), Positives = 80/221 (36%), Gaps = 34/221 (15%)
Query: 128 PRFPG--GPRPTLRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGM 184
P +PG GP+ +L P P A G G++ L + + PR + P+ GP + P
Sbjct: 715 PGYPGRQGPKGSLGFPGFPGASGEKGARGL---SGKSGPRGERGPT--GPRGQRGPRGAT 769
Query: 185 ASVGPQSYGGGMRP--PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGP 242
G + GG P PP PG N PG +GP P + +P G G
Sbjct: 770 GKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE-VGF 828
Query: 243 PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG----PGPEGPMAAMSA 298
G GPPG P + P QGA P+G PGP GP
Sbjct: 829 QGKTGPPGPPGVVGP------------------QGAAGETGPMGERGHPGPPGPPGEQGL 870
Query: 299 MEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDG 338
G+ G G P K P + G G P G
Sbjct: 871 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG 911
Score = 57.8 bits (138), Expect = 2e-08
Identities = 75/274 (27%), Positives = 95/274 (34%), Gaps = 48/274 (17%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP----------PAGL 148
P P+ + PG GS + P+ P GP+ P + G+
Sbjct: 403 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGM 462
Query: 149 PGSQPL--------LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM-ASVGPQSYGG 194
PG + LPG P +GH G PP RG +GP+ G
Sbjct: 463 PGDPGVKGDRGFDGLPGL----PGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 518
Query: 195 GMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 253
P L GP G P + PGVRG P G P S P GPPG G PGT
Sbjct: 519 --ESGPRGLLGPKGPPGIPGPPGVRG-MDGPQG---PKGSLGPQGEPGPPGQQGTPGTQG 572
Query: 254 MPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLG-S 310
+P P + + P G+ G+ P PG +GP P G+ G S
Sbjct: 573 LPGPQGA----------IGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPS 622
Query: 311 GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G L P V G+ G GE G
Sbjct: 623 GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 656
Score = 55.1 bits (131), Expect = 1e-07
Identities = 61/235 (25%), Positives = 78/235 (33%), Gaps = 34/235 (14%)
Query: 136 PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGG 195
P L + P GL G + P +EP +G P GP + PP + GP G
Sbjct: 283 PPLEEAAHGPRGLKGEKGE-PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGE 341
Query: 196 MRPP-----PNSLAGPGLPAMNM--------GPGVRGPWAS----------PSGNSIPYS 232
PP P S PG P ++ G G +GP +
Sbjct: 342 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 401
Query: 233 SSSPGSYTGPPGGGGPPGTP-IMPSPGD-STNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
P YTG PG G PG+P + GD + P G+ R G
Sbjct: 402 PPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-------GRA 454
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G A V G G + GLP + G PG P +DGE G
Sbjct: 455 GADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDG 509
Score = 55.1 bits (131), Expect = 1e-07
Identities = 74/258 (28%), Positives = 86/258 (33%), Gaps = 50/258 (19%)
Query: 125 FMSPRFPGGPRPTLRMPSQP-------------PAGLPGSQPLLPGAMEPSPRAQ-GHPS 170
F P+ P GP +P P P G PG A E P + GHP
Sbjct: 801 FPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 860
Query: 171 MGGPMQRVT---------------PPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNM 213
GP PP GP G G R P + GPGL N
Sbjct: 861 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG-NE 919
Query: 214 GPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNP 273
GP GP P+G+ ++ G GPPG GP G P + G+ E P
Sbjct: 920 GPS--GP-PGPAGSPGERGAAGSGGPIGPPGRPGPQGPP--GAAGEKGVPGEK-----GP 969
Query: 274 IG-QGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVAG 326
IG G P+G PGP GP G G G P PG + G
Sbjct: 970 IGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-G 1028
Query: 327 LSNAPGTPRDDGEMAAAG 344
PG DGE A G
Sbjct: 1029 PVGQPGAAGADGEPGARG 1046
Score = 49.3 bits (116), Expect = 5e-06
Identities = 62/227 (27%), Positives = 79/227 (34%), Gaps = 25/227 (11%)
Query: 134 PRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYG 193
P R P Q P+ L Q P + +P+P + + PP A+ GP+
Sbjct: 241 PHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESS----LLPPLEEAAHGPRGLK 296
Query: 194 GGMRPP----PNSLA----GPGLPAMNMGP----GVRGPWASPSGNSIPYSSSSPGSYTG 241
G P P L GP PA +GP G GP P P + PGS
Sbjct: 297 GEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGS--- 353
Query: 242 PPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAG---RANFPLGPGPEGPMAAMSA 298
G GPPGT +M + + + Q +A L GP GPM
Sbjct: 354 -DGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLAL-RGPPGPMGYTGR 411
Query: 299 MEPHHVNGSLG-SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
P GS G G+ L P GL+ PG G A G
Sbjct: 412 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 458
Score = 45.1 bits (105), Expect = 1e-04
Identities = 70/261 (26%), Positives = 86/261 (32%), Gaps = 33/261 (12%)
Query: 99 PSPVMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 157
P GS+ P G+ G Q P+ GP +P GLPG +PG
Sbjct: 546 PQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKP--GLPG----MPG 599
Query: 158 AMEPSPRAQGHPSMGGPM-----QRVTPPRG-MASVGPQSYGG-----GMRPPPNSLAGP 206
+ P GHP GP Q + P+G + GP+ G G++
Sbjct: 600 SDGPP----GHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGED 655
Query: 207 GLPAMNMGPGVRGPWASPS--GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 264
G P GV+G G+ P TGP G GPPG +M G
Sbjct: 656 GFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG--LMGEKGKLGVPG 713
Query: 265 ENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 323
Y P QG G FP PG G A G G G + P
Sbjct: 714 LPGY----PGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRG--QRGPRG 767
Query: 324 VAGLSNAPGTPRDDGEMAAAG 344
G S A GT DG G
Sbjct: 768 ATGKSGAKGTSGGDGPHGPPG 788
Score = 43.1 bits (100), Expect = 4e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 37/162 (22%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM 184
G P T + PAG PG L LPG++ R G GP V PP RG
Sbjct: 1259 GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPVGPPGLPGLRGD 1317
Query: 185 ASV-GPQSYGG--GMRPPPNSLAGPG---LPAMNMGPGVRG----PWAS----------- 223
A G + + G G+ PP G LP PG +G P AS
Sbjct: 1318 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1377
Query: 224 --PSGNSIPYSSSSPGS------YTGPPGGGGPPGTPIMPSP 257
P+G ++ PG GPPG GPPG I P P
Sbjct: 1378 PGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1419
Score = 42.7 bits (99), Expect = 5e-04
Identities = 65/242 (26%), Positives = 78/242 (32%), Gaps = 44/242 (18%)
Query: 136 PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT--------PPRGMASV 187
PT R Q P GLPG P P + +G +G P Q+ T PP +
Sbjct: 972 PTGRDGVQGPVGLPG--PAGPPGVAGEDGDKGE--VGDPGQKGTKGNKGEHGPPGPPGPI 1027
Query: 188 GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPWA-----SPSGNSIPYSSS 234
GP G G R P G G GP PSG
Sbjct: 1028 GPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDV 1087
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-----GAGRANFPLGPGP 289
P GPPG GP G P+ D + P G+ +G PG
Sbjct: 1088 GPMGPPGPPGPRGPAG----PNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGV 1143
Query: 290 EGPMAAMSAMEPHHVNGSLG-------SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAA 342
+GP G G +GD DG PK +PG V G PG P + G
Sbjct: 1144 KGPRGERGEKGESGQPGEPGPPGPKGPTGD-DG-PKGNPGPV-GFPGDPGPPGEGGPRGQ 1200
Query: 343 AG 344
G
Sbjct: 1201 DG 1202
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 64.7 bits (156), Expect = 1e-10
Identities = 73/263 (27%), Positives = 91/263 (34%), Gaps = 50/263 (19%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPG-----SQPLLPGAMEPSPRAQ-------------GHP 169
P PG P P P G PG P PG E PR Q G P
Sbjct: 1138 PGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPG--EGGPRGQDGAKGDRGEDGEPGQP 1195
Query: 170 SMGGPMQRVTPPRGMASVGP--------QSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGP 220
GP PP + GP + G G + P ++ PG GP G GP
Sbjct: 1196 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG----KTGPVGPAGP 1251
Query: 221 WASPSGNSIPYSSSSPGSY--------TGPPGGGGPPGTPIMPSPGDSTNSSEN----MY 268
P + + S G GPPG GPPG P + GD+ E +
Sbjct: 1252 AGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR--GDAGAKGEKGHPGLI 1309
Query: 269 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 328
++ P G+ + + L PGP+G M +G +G G GLP P G
Sbjct: 1310 GLIGPPGEQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLP--GPAGPKGAK 1366
Query: 329 NAPGTPRDDGEMAAAGTFLHPFP 351
A G GE G HP P
Sbjct: 1367 GATGPGGPKGEKGVQGPPGHPGP 1389
Score = 58.9 bits (141), Expect = 7e-09
Identities = 62/221 (28%), Positives = 80/221 (36%), Gaps = 34/221 (15%)
Query: 128 PRFPG--GPRPTLRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGM 184
P +PG GP+ +L P P A G G++ L + + PR + P+ GP + P
Sbjct: 694 PGYPGRQGPKGSLGFPGFPGASGEKGARGL---SGKSGPRGERGPT--GPRGQRGPRGAT 748
Query: 185 ASVGPQSYGGGMRP--PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGP 242
G + GG P PP PG N PG +GP P + +P G G
Sbjct: 749 GKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE-VGF 807
Query: 243 PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG----PGPEGPMAAMSA 298
G GPPG P + P QGA P+G PGP GP
Sbjct: 808 QGKTGPPGPPGVVGP------------------QGAAGETGPMGERGHPGPPGPPGEQGL 849
Query: 299 MEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDG 338
G+ G G P K P + G G P G
Sbjct: 850 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG 890
Score = 57.8 bits (138), Expect = 2e-08
Identities = 75/274 (27%), Positives = 95/274 (34%), Gaps = 48/274 (17%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP----------PAGL 148
P P+ + PG GS + P+ P GP+ P + G+
Sbjct: 382 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGM 441
Query: 149 PGSQPL--------LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM-ASVGPQSYGG 194
PG + LPG P +GH G PP RG +GP+ G
Sbjct: 442 PGDPGVKGDRGFDGLPGL----PGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 497
Query: 195 GMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 253
P L GP G P + PGVRG P G P S P GPPG G PGT
Sbjct: 498 --ESGPRGLLGPKGPPGIPGPPGVRG-MDGPQG---PKGSLGPQGEPGPPGQQGTPGTQG 551
Query: 254 MPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLG-S 310
+P P + + P G+ G+ P PG +GP P G+ G S
Sbjct: 552 LPGPQGA----------IGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPS 601
Query: 311 GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G L P V G+ G GE G
Sbjct: 602 GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 635
Score = 55.1 bits (131), Expect = 1e-07
Identities = 74/258 (28%), Positives = 86/258 (33%), Gaps = 50/258 (19%)
Query: 125 FMSPRFPGGPRPTLRMPSQP-------------PAGLPGSQPLLPGAMEPSPRAQ-GHPS 170
F P+ P GP +P P P G PG A E P + GHP
Sbjct: 780 FPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 839
Query: 171 MGGPMQRVT---------------PPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNM 213
GP PP GP G G R P + GPGL N
Sbjct: 840 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG-NE 898
Query: 214 GPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNP 273
GP GP P+G+ ++ G GPPG GP G P + G+ E P
Sbjct: 899 GPS--GP-PGPAGSPGERGAAGSGGPIGPPGRPGPQGPP--GAAGEKGVPGEK-----GP 948
Query: 274 IG-QGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVAG 326
IG G P+G PGP GP G G G P PG + G
Sbjct: 949 IGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-G 1007
Query: 327 LSNAPGTPRDDGEMAAAG 344
PG DGE A G
Sbjct: 1008 PVGQPGAAGADGEPGARG 1025
Score = 52.8 bits (125), Expect = 5e-07
Identities = 59/226 (26%), Positives = 75/226 (33%), Gaps = 34/226 (15%)
Query: 145 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP----- 199
P GL G + P +EP +G P GP + PP + GP G PP
Sbjct: 271 PRGLKGEKGE-PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGL 329
Query: 200 PNSLAGPGLPAMNM--------GPGVRGPWAS----------PSGNSIPYSSSSPGSYTG 241
P S PG P ++ G G +GP + P YTG
Sbjct: 330 PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTG 389
Query: 242 PPGGGGPPGTP-IMPSPGD-STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
PG G PG+P + GD + P G+ R G G A
Sbjct: 390 RPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-------GRAGADGARGMP 442
Query: 300 EPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAG 344
V G G + GLP + G PG P +DGE G
Sbjct: 443 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDG 488
Score = 45.1 bits (105), Expect = 1e-04
Identities = 70/261 (26%), Positives = 86/261 (32%), Gaps = 33/261 (12%)
Query: 99 PSPVMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 157
P GS+ P G+ G Q P+ GP +P GLPG +PG
Sbjct: 525 PQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKP--GLPG----MPG 578
Query: 158 AMEPSPRAQGHPSMGGPM-----QRVTPPRG-MASVGPQSYGG-----GMRPPPNSLAGP 206
+ P GHP GP Q + P+G + GP+ G G++
Sbjct: 579 SDGPP----GHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGED 634
Query: 207 GLPAMNMGPGVRGPWASPS--GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 264
G P GV+G G+ P TGP G GPPG +M G
Sbjct: 635 GFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG--LMGEKGKLGVPG 692
Query: 265 ENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 323
Y P QG G FP PG G A G G G + P
Sbjct: 693 LPGY----PGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRG--QRGPRG 746
Query: 324 VAGLSNAPGTPRDDGEMAAAG 344
G S A GT DG G
Sbjct: 747 ATGKSGAKGTSGGDGPHGPPG 767
Score = 43.1 bits (100), Expect = 4e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 37/162 (22%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM 184
G P T + PAG PG L LPG++ R G GP V PP RG
Sbjct: 1238 GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPVGPPGLPGLRGD 1296
Query: 185 ASV-GPQSYGG--GMRPPPNSLAGPG---LPAMNMGPGVRG----PWAS----------- 223
A G + + G G+ PP G LP PG +G P AS
Sbjct: 1297 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1356
Query: 224 --PSGNSIPYSSSSPGS------YTGPPGGGGPPGTPIMPSP 257
P+G ++ PG GPPG GPPG I P P
Sbjct: 1357 PGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1398
Score = 42.7 bits (99), Expect = 5e-04
Identities = 65/242 (26%), Positives = 78/242 (32%), Gaps = 44/242 (18%)
Query: 136 PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT--------PPRGMASV 187
PT R Q P GLPG P P + +G +G P Q+ T PP +
Sbjct: 951 PTGRDGVQGPVGLPG--PAGPPGVAGEDGDKGE--VGDPGQKGTKGNKGEHGPPGPPGPI 1006
Query: 188 GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPWA-----SPSGNSIPYSSS 234
GP G G R P G G GP PSG
Sbjct: 1007 GPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDV 1066
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-----GAGRANFPLGPGP 289
P GPPG GP G P+ D + P G+ +G PG
Sbjct: 1067 GPMGPPGPPGPRGPAG----PNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGV 1122
Query: 290 EGPMAAMSAMEPHHVNGSLG-------SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAA 342
+GP G G +GD DG PK +PG V G PG P + G
Sbjct: 1123 KGPRGERGEKGESGQPGEPGPPGPKGPTGD-DG-PKGNPGPV-GFPGDPGPPGEGGPRGQ 1179
Query: 343 AG 344
G
Sbjct: 1180 DG 1181
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 64.7 bits (156), Expect = 1e-10
Identities = 73/263 (27%), Positives = 91/263 (34%), Gaps = 50/263 (19%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPG-----SQPLLPGAMEPSPRAQ-------------GHP 169
P PG P P P G PG P PG E PR Q G P
Sbjct: 1245 PGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPG--EGGPRGQDGAKGDRGEDGEPGQP 1302
Query: 170 SMGGPMQRVTPPRGMASVGP--------QSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGP 220
GP PP + GP + G G + P ++ PG GP G GP
Sbjct: 1303 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG----KTGPVGPAGP 1358
Query: 221 WASPSGNSIPYSSSSPGSY--------TGPPGGGGPPGTPIMPSPGDSTNSSEN----MY 268
P + + S G GPPG GPPG P + GD+ E +
Sbjct: 1359 AGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR--GDAGAKGEKGHPGLI 1416
Query: 269 TIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLS 328
++ P G+ + + L PGP+G M +G +G G GLP P G
Sbjct: 1417 GLIGPPGEQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLP--GPAGPKGAK 1473
Query: 329 NAPGTPRDDGEMAAAGTFLHPFP 351
A G GE G HP P
Sbjct: 1474 GATGPGGPKGEKGVQGPPGHPGP 1496
Score = 58.9 bits (141), Expect = 7e-09
Identities = 62/221 (28%), Positives = 80/221 (36%), Gaps = 34/221 (15%)
Query: 128 PRFPG--GPRPTLRMPSQPPA-GLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGM 184
P +PG GP+ +L P P A G G++ L + + PR + P+ GP + P
Sbjct: 801 PGYPGRQGPKGSLGFPGFPGASGEKGARGL---SGKSGPRGERGPT--GPRGQRGPRGAT 855
Query: 185 ASVGPQSYGGGMRP--PPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGP 242
G + GG P PP PG N PG +GP P + +P G G
Sbjct: 856 GKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGE-VGF 914
Query: 243 PGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLG----PGPEGPMAAMSA 298
G GPPG P + P QGA P+G PGP GP
Sbjct: 915 QGKTGPPGPPGVVGP------------------QGAAGETGPMGERGHPGPPGPPGEQGL 956
Query: 299 MEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDG 338
G+ G G P K P + G G P G
Sbjct: 957 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAG 997
Score = 57.8 bits (138), Expect = 2e-08
Identities = 75/274 (27%), Positives = 95/274 (34%), Gaps = 48/274 (17%)
Query: 99 PSPVMGSMAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQP----------PAGL 148
P P+ + PG GS + P+ P GP+ P + G+
Sbjct: 489 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGM 548
Query: 149 PGSQPL--------LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM-ASVGPQSYGG 194
PG + LPG P +GH G PP RG +GP+ G
Sbjct: 549 PGDPGVKGDRGFDGLPGL----PGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 604
Query: 195 GMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 253
P L GP G P + PGVRG P G P S P GPPG G PGT
Sbjct: 605 --ESGPRGLLGPKGPPGIPGPPGVRG-MDGPQG---PKGSLGPQGEPGPPGQQGTPGTQG 658
Query: 254 MPSPGDSTNSSENMYTIMNPIGQGA--GRANFPLGPGPEGPMAAMSAMEPHHVNGSLG-S 310
+P P + + P G+ G+ P PG +GP P G+ G S
Sbjct: 659 LPGPQGA----------IGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPS 708
Query: 311 GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
G L P V G+ G GE G
Sbjct: 709 GPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG 742
Score = 55.1 bits (131), Expect = 1e-07
Identities = 74/258 (28%), Positives = 86/258 (33%), Gaps = 50/258 (19%)
Query: 125 FMSPRFPGGPRPTLRMPSQP-------------PAGLPGSQPLLPGAMEPSPRAQ-GHPS 170
F P+ P GP +P P P G PG A E P + GHP
Sbjct: 887 FPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 946
Query: 171 MGGPMQRVT---------------PPRGMASVGPQSYGG--GMRPPPNSLAGPGLPAMNM 213
GP PP GP G G R P + GPGL N
Sbjct: 947 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG-NE 1005
Query: 214 GPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNP 273
GP GP P+G+ ++ G GPPG GP G P + G+ E P
Sbjct: 1006 GPS--GP-PGPAGSPGERGAAGSGGPIGPPGRPGPQGPP--GAAGEKGVPGEK-----GP 1055
Query: 274 IG-QGAGRANFPLG-PGPEGPMAAMSAMEPHHVNGSLGSGDMDGL-----PKSSPGAVAG 326
IG G P+G PGP GP G G G P PG + G
Sbjct: 1056 IGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-G 1114
Query: 327 LSNAPGTPRDDGEMAAAG 344
PG DGE A G
Sbjct: 1115 PVGQPGAAGADGEPGARG 1132
Score = 52.8 bits (125), Expect = 5e-07
Identities = 59/226 (26%), Positives = 75/226 (33%), Gaps = 34/226 (15%)
Query: 145 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP----- 199
P GL G + P +EP +G P GP + PP + GP G PP
Sbjct: 378 PRGLKGEKGE-PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGL 436
Query: 200 PNSLAGPGLPAMNM--------GPGVRGPWAS----------PSGNSIPYSSSSPGSYTG 241
P S PG P ++ G G +GP + P YTG
Sbjct: 437 PGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTG 496
Query: 242 PPGGGGPPGTP-IMPSPGD-STNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
PG G PG+P + GD + P G+ R G G A
Sbjct: 497 RPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-------GRAGADGARGMP 549
Query: 300 EPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAG 344
V G G + GLP + G PG P +DGE G
Sbjct: 550 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDG 595
Score = 45.1 bits (105), Expect = 1e-04
Identities = 70/261 (26%), Positives = 86/261 (32%), Gaps = 33/261 (12%)
Query: 99 PSPVMGSMAP-GDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 157
P GS+ P G+ G Q P+ GP +P GLPG +PG
Sbjct: 632 PQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKP--GLPG----MPG 685
Query: 158 AMEPSPRAQGHPSMGGPM-----QRVTPPRG-MASVGPQSYGG-----GMRPPPNSLAGP 206
+ P GHP GP Q + P+G + GP+ G G++
Sbjct: 686 SDGPP----GHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGED 741
Query: 207 GLPAMNMGPGVRGPWASPS--GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 264
G P GV+G G+ P TGP G GPPG +M G
Sbjct: 742 GFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG--LMGEKGKLGVPG 799
Query: 265 ENMYTIMNPIGQG-AGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGA 323
Y P QG G FP PG G A G G G + P
Sbjct: 800 LPGY----PGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRG--QRGPRG 853
Query: 324 VAGLSNAPGTPRDDGEMAAAG 344
G S A GT DG G
Sbjct: 854 ATGKSGAKGTSGGDGPHGPPG 874
Score = 43.1 bits (100), Expect = 4e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 37/162 (22%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPL--LPGAMEPSPRAQGHPSMGGPMQRVTPP-----RGM 184
G P T + PAG PG L LPG++ R G GP V PP RG
Sbjct: 1345 GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-GATGQAGPPGPVGPPGLPGLRGD 1403
Query: 185 ASV-GPQSYGG--GMRPPPNSLAGPG---LPAMNMGPGVRG----PWAS----------- 223
A G + + G G+ PP G LP PG +G P AS
Sbjct: 1404 AGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1463
Query: 224 --PSGNSIPYSSSSPGS------YTGPPGGGGPPGTPIMPSP 257
P+G ++ PG GPPG GPPG I P P
Sbjct: 1464 PGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLP 1505
Score = 42.7 bits (99), Expect = 5e-04
Identities = 65/242 (26%), Positives = 78/242 (32%), Gaps = 44/242 (18%)
Query: 136 PTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT--------PPRGMASV 187
PT R Q P GLPG P P + +G +G P Q+ T PP +
Sbjct: 1058 PTGRDGVQGPVGLPG--PAGPPGVAGEDGDKGE--VGDPGQKGTKGNKGEHGPPGPPGPI 1113
Query: 188 GPQSYGG--------GMRPPPNSLAGPGLPAMNMGPGVRGPWA-----SPSGNSIPYSSS 234
GP G G R P G G GP PSG
Sbjct: 1114 GPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDV 1173
Query: 235 SPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-----GAGRANFPLGPGP 289
P GPPG GP G P+ D + P G+ +G PG
Sbjct: 1174 GPMGPPGPPGPRGPAG----PNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGV 1229
Query: 290 EGPMAAMSAMEPHHVNGSLG-------SGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAA 342
+GP G G +GD DG PK +PG V G PG P + G
Sbjct: 1230 KGPRGERGEKGESGQPGEPGPPGPKGPTGD-DG-PKGNPGPV-GFPGDPGPPGEGGPRGQ 1286
Query: 343 AG 344
G
Sbjct: 1287 DG 1288
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 64.3 bits (155), Expect = 2e-10
Identities = 67/230 (29%), Positives = 81/230 (35%), Gaps = 21/230 (9%)
Query: 130 FPGGPRPTLRMPSQPPAGLPGSQ----PLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGM 184
FPG P P P G G P+ P P PR QG GP PP +
Sbjct: 1202 FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG-PPGPRGPQGPNGADGPQG---PPGSV 1257
Query: 185 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWAS--PSGNSIPYSSSSPGSYTGP 242
SVG G G + P PG P GV GP G + P ++ P GP
Sbjct: 1258 GSVG----GVGEKGEPGEAGNPGPPGE---AGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Query: 243 PGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEP 301
PG GP G P + PGD E + +G G P PGP GP P
Sbjct: 1311 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1370
Query: 302 HHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
G G+ +G + G + A G P G + G P P
Sbjct: 1371 PGKRGPPGAAGAEG--RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1418
Score = 61.6 bits (148), Expect = 1e-09
Identities = 70/237 (29%), Positives = 90/237 (37%), Gaps = 31/237 (13%)
Query: 128 PRFPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P +PG GP+ + P P G G + A +P PR Q P+ + P G
Sbjct: 855 PGYPGRQGPKGSTGFPGFP--GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTG-- 910
Query: 186 SVGPQSYGGGMRPP-PNSLAGPGLPAMNMG-PGVRGPWASPSGNSIPYSSSSPGSYTGPP 243
GP+ GG PP P GP P +G PG +GP P + +P G TG
Sbjct: 911 KPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE-TGFQ 969
Query: 244 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-GAGRANFPLG----PGPEGPMAAMSA 298
G GPPG + P T + PIG+ G P G PG G A
Sbjct: 970 GKTGPPGPGGVVGPQGPTGET-------GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 1022
Query: 299 MEPHHVNGSLGSGDMDGLP--KSSPGAVA--------GLSNAPGTPRDDGEMAAAGT 345
P ++G G + G P + PGA G PG GE +AGT
Sbjct: 1023 PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1079
Score = 56.6 bits (135), Expect = 3e-08
Identities = 69/238 (28%), Positives = 80/238 (33%), Gaps = 29/238 (12%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 191
G P P PAGL G PG P AQG P + G PP + S G +
Sbjct: 1021 GDPGPQGISGKDGPAGLRG----FPGE-RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG 1075
Query: 192 YGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 250
G AGP GLP PG +GP P+G P G G GP G
Sbjct: 1076 SAG--------TAGPIGLPGR---PGPQGP-PGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1123
Query: 251 TPIMPSPGDSTNSSENMYTIMNPIGQGA----GRANFPLGPGPEGPMAAMSAME------ 300
P P S + I P +G+ G P PG +GP+ A
Sbjct: 1124 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1183
Query: 301 PHHVNGSLGS-GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
P G G GD P GL PG P + GE G P P P
Sbjct: 1184 PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1241
Score = 56.2 bits (134), Expect = 4e-08
Identities = 68/252 (26%), Positives = 85/252 (33%), Gaps = 54/252 (21%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPR-----------AQGHPSMGGPMQRVT 179
PG P P P G PG + PGA R A+G P GP+
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKRGP-PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQG 1411
Query: 180 P-----PRGMAS----VGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNS 228
P P G+ VG Q G G PP + PGLP + PG +G P
Sbjct: 1412 PAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1471
Query: 229 IPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP- 287
+ GPPG G G +P T +P +G G P GP
Sbjct: 1472 L----------IGPPGEQGEKGDRGLPG------------TQGSPGAKGDGGIPGPAGPL 1509
Query: 288 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
GP GP P GS G G +GL PG+P GE+ L
Sbjct: 1510 GPPGPPGLPGPQGPKGNKGSTGPAGQKG--------DSGLPGPPGSPGPPGEVIQPLPIL 1561
Query: 348 HPFPSESYSPGM 359
+ ++ GM
Sbjct: 1562 SSKKTRRHTEGM 1573
Score = 53.9 bits (128), Expect = 2e-07
Identities = 74/271 (27%), Positives = 92/271 (33%), Gaps = 47/271 (17%)
Query: 128 PRFPGGPRPTLRMPSQP----PAGLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPP 181
P+ P GP M + P GLPG G + P +P A G P M G PP
Sbjct: 632 PQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR-GLLGPRGTPGAPGQPGMAGVDG---PP 687
Query: 182 RGMASVGPQSYGGGM----RPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
++GPQ G P P L GP P PG +GP P +P + PG
Sbjct: 688 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPG 745
Query: 238 -----------SYTGPPGGGGPPGTP----------IMPSPGDSTNSSENMYT-IMNPIG 275
GPPG GP G P + G E+ + +G
Sbjct: 746 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 805
Query: 276 QGAGRANF-PLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVA--G 326
R +GP GPEGP +G G G+P PG G
Sbjct: 806 LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 865
Query: 327 LSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
+ PG P +GE A G P P P
Sbjct: 866 STGFPGFPGANGEKGARGVAGKPGPRGQRGP 896
Score = 53.5 bits (127), Expect = 3e-07
Identities = 67/229 (29%), Positives = 75/229 (32%), Gaps = 41/229 (17%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P PG Q P G PG + E PR G P GP + + PRG
Sbjct: 618 PGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR--GLPGEAGP-RGLLGPRGTPGA 674
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 246
Q G+ PP P NMGP G GP GN P P GPPG
Sbjct: 675 PGQPGMAGVDGPPG-------PKGNMGPQGEPGP-PGQQGNPGPQGLPGPQGPIGPPGEK 726
Query: 247 GPPGTPIMPS----------PGDSTNSSENMYTIMNPIGQGAGRANFPLGP-GPEGPMAA 295
GP G P + PG S E +GA P GP G GP
Sbjct: 727 GPQGKPGLAGLPGADGPPGHPGKEGQSGE----------KGALGPPGPQGPIGYPGPRGV 776
Query: 296 MSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
A + GS G DG P G G D GE+ G
Sbjct: 777 KGADGVRGLKGSKGEKGEDGFP--------GFKGDMGLKGDRGEVGQIG 817
Score = 53.5 bits (127), Expect = 3e-07
Identities = 66/240 (27%), Positives = 77/240 (32%), Gaps = 18/240 (7%)
Query: 126 MSPRFPGGPR-PTLRMPSQPPAGLPGSQPLLPGAMEP-------SPRAQGHPSMGGPMQR 177
M P P GPR P + P G PGS + G E +P G +GGP
Sbjct: 1230 MGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGE 1289
Query: 178 VTPPRGMASVGPQSYGGGMRPP----PNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYS 232
G G PP P GP G P PG GP
Sbjct: 1290 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGE 1349
Query: 233 SSSPGSY--TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
PG GP G GPPG P P + + E G+ AG P GP
Sbjct: 1350 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA-EGRQGEKGAKGE-AGAEGPPGKTGPV 1407
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 349
GP P + G G GLP + G PG P G+ + G HP
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1467
Score = 50.1 bits (118), Expect = 3e-06
Identities = 58/215 (26%), Positives = 70/215 (32%), Gaps = 38/215 (17%)
Query: 156 PGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP-------PNSLAGPG- 207
P +EP +G P GP + PP GP G PP + L GP
Sbjct: 443 PAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPG 502
Query: 208 ----LPAMNMGPGVRGPWAS-PSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDST 261
LP G G +GP S + + + GPPG G G P + PG S
Sbjct: 503 TMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSG 562
Query: 262 NSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMD---GLPK 318
E+ PGP+GP P G G D G+P
Sbjct: 563 AKGESG------------------DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP- 603
Query: 319 SSPGAVA--GLSNAPGTPRDDGEMAAAGTFLHPFP 351
PGA G PG P D G G P P
Sbjct: 604 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638
Score = 49.3 bits (116), Expect = 5e-06
Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 42/175 (24%)
Query: 145 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVG----PQSYG------- 193
P G PG LPG ++ P ++G G + + PP G P + G
Sbjct: 1445 PMGPPG----LPG-LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD 1499
Query: 194 GGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 253
GG+ P L PG P + PG +GP + G++ P GPPG GPPG I
Sbjct: 1500 GGIPGPAGPLGPPGPPGL---PGPQGPKGN-KGSTGPAGQKGDSGLPGPPGSPGPPGEVI 1555
Query: 254 MPSP----------------------GDSTNSSENMYTIMNPIGQGAGRANFPLG 286
P P D ++ E ++ +N + Q FP+G
Sbjct: 1556 QPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMG 1610
Score = 46.6 bits (109), Expect = 3e-05
Identities = 71/287 (24%), Positives = 86/287 (29%), Gaps = 60/287 (20%)
Query: 107 APGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQ 166
APG AG + M P+ G P P + + P GLPG Q + E P Q
Sbjct: 674 APGQPGMAGVDGPPGPKGNMGPQ--GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP--Q 729
Query: 167 GHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP----PNSLAGP---------------- 206
G P + G PP G G + PP P GP
Sbjct: 730 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSK 789
Query: 207 ------GLPAMNMGPGVRGPWAS--------------PSGNSIPYSSSSPGSYTGPPGGG 246
G P G++G P G + P P G G
Sbjct: 790 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 849
Query: 247 GPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGP----GPEGPMAAMSAMEP 301
G PG P P G ++ + N G A P GP GP GP + A P
Sbjct: 850 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKP-GPRGQRGPTGPRGSRGARGP 908
Query: 302 HHVNGSLGSGDMDGLP----------KSSPGAVAGLSNAPGTPRDDG 338
G G+ DG P P G PG P DG
Sbjct: 909 TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 955
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/182 (25%), Positives = 57/182 (31%), Gaps = 32/182 (17%)
Query: 199 PPNSLAGPGLPA--------------------------MNMGPGVRGP--WASPSGNSIP 230
PPN GPG+PA + G V GP A P+G P
Sbjct: 408 PPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP 467
Query: 231 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
P G PG GPPG P +P M +M P G + P E
Sbjct: 468 PGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTM--LMLPFRYGGDGSKGPTISAQE 525
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 350
A+ + G G + G P P G S A G D G G P
Sbjct: 526 AQAQAILQQARIALRGPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 583
Query: 351 PS 352
P+
Sbjct: 584 PT 585
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/108 (27%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 240 TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
T PP PG P +++ + Y G+ A L GP GP M
Sbjct: 406 TSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIM 465
Query: 300 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
P + G G P PG G PG P DG GT L
Sbjct: 466 GPPGLQGPTG-------PPGDPGD-RGPPGRPGLPGADGLPGPPGTML 505
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 64.3 bits (155), Expect = 2e-10
Identities = 67/230 (29%), Positives = 81/230 (35%), Gaps = 21/230 (9%)
Query: 130 FPGGPRPTLRMPSQPPAGLPGSQ----PLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGM 184
FPG P P P G G P+ P P PR QG GP PP +
Sbjct: 1151 FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG-PPGPRGPQGPNGADGPQG---PPGSV 1206
Query: 185 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWAS--PSGNSIPYSSSSPGSYTGP 242
SVG G G + P PG P GV GP G + P ++ P GP
Sbjct: 1207 GSVG----GVGEKGEPGEAGNPGPPGE---AGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Query: 243 PGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEP 301
PG GP G P + PGD E + +G G P PGP GP P
Sbjct: 1260 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1319
Query: 302 HHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
G G+ +G + G + A G P G + G P P
Sbjct: 1320 PGKRGPPGAAGAEG--RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1367
Score = 61.6 bits (148), Expect = 1e-09
Identities = 70/237 (29%), Positives = 90/237 (37%), Gaps = 31/237 (13%)
Query: 128 PRFPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P +PG GP+ + P P G G + A +P PR Q P+ + P G
Sbjct: 804 PGYPGRQGPKGSTGFPGFP--GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTG-- 859
Query: 186 SVGPQSYGGGMRPP-PNSLAGPGLPAMNMG-PGVRGPWASPSGNSIPYSSSSPGSYTGPP 243
GP+ GG PP P GP P +G PG +GP P + +P G TG
Sbjct: 860 KPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE-TGFQ 918
Query: 244 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-GAGRANFPLG----PGPEGPMAAMSA 298
G GPPG + P T + PIG+ G P G PG G A
Sbjct: 919 GKTGPPGPGGVVGPQGPTGET-------GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 971
Query: 299 MEPHHVNGSLGSGDMDGLP--KSSPGAVA--------GLSNAPGTPRDDGEMAAAGT 345
P ++G G + G P + PGA G PG GE +AGT
Sbjct: 972 PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1028
Score = 56.6 bits (135), Expect = 3e-08
Identities = 69/238 (28%), Positives = 80/238 (33%), Gaps = 29/238 (12%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 191
G P P PAGL G PG P AQG P + G PP + S G +
Sbjct: 970 GDPGPQGISGKDGPAGLRG----FPGE-RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG 1024
Query: 192 YGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 250
G AGP GLP PG +GP P+G P G G GP G
Sbjct: 1025 SAG--------TAGPIGLPGR---PGPQGP-PGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1072
Query: 251 TPIMPSPGDSTNSSENMYTIMNPIGQGA----GRANFPLGPGPEGPMAAMSAME------ 300
P P S + I P +G+ G P PG +GP+ A
Sbjct: 1073 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1132
Query: 301 PHHVNGSLGS-GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
P G G GD P GL PG P + GE G P P P
Sbjct: 1133 PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1190
Score = 56.2 bits (134), Expect = 4e-08
Identities = 68/252 (26%), Positives = 85/252 (33%), Gaps = 54/252 (21%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPR-----------AQGHPSMGGPMQRVT 179
PG P P P G PG + PGA R A+G P GP+
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKRGP-PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQG 1360
Query: 180 P-----PRGMAS----VGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNS 228
P P G+ VG Q G G PP + PGLP + PG +G P
Sbjct: 1361 PAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1420
Query: 229 IPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP- 287
+ GPPG G G +P T +P +G G P GP
Sbjct: 1421 L----------IGPPGEQGEKGDRGLPG------------TQGSPGAKGDGGIPGPAGPL 1458
Query: 288 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
GP GP P GS G G +GL PG+P GE+ L
Sbjct: 1459 GPPGPPGLPGPQGPKGNKGSTGPAGQKG--------DSGLPGPPGSPGPPGEVIQPLPIL 1510
Query: 348 HPFPSESYSPGM 359
+ ++ GM
Sbjct: 1511 SSKKTRRHTEGM 1522
Score = 53.9 bits (128), Expect = 2e-07
Identities = 74/271 (27%), Positives = 92/271 (33%), Gaps = 47/271 (17%)
Query: 128 PRFPGGPRPTLRMPSQP----PAGLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPP 181
P+ P GP M + P GLPG G + P +P A G P M G PP
Sbjct: 581 PQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR-GLLGPRGTPGAPGQPGMAGVDG---PP 636
Query: 182 RGMASVGPQSYGGGM----RPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
++GPQ G P P L GP P PG +GP P +P + PG
Sbjct: 637 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPG 694
Query: 238 -----------SYTGPPGGGGPPGTP----------IMPSPGDSTNSSENMYT-IMNPIG 275
GPPG GP G P + G E+ + +G
Sbjct: 695 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 754
Query: 276 QGAGRANF-PLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVA--G 326
R +GP GPEGP +G G G+P PG G
Sbjct: 755 LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 814
Query: 327 LSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
+ PG P +GE A G P P P
Sbjct: 815 STGFPGFPGANGEKGARGVAGKPGPRGQRGP 845
Score = 53.5 bits (127), Expect = 3e-07
Identities = 67/229 (29%), Positives = 75/229 (32%), Gaps = 41/229 (17%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P PG Q P G PG + E PR G P GP + + PRG
Sbjct: 567 PGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR--GLPGEAGP-RGLLGPRGTPGA 623
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 246
Q G+ PP P NMGP G GP GN P P GPPG
Sbjct: 624 PGQPGMAGVDGPPG-------PKGNMGPQGEPGP-PGQQGNPGPQGLPGPQGPIGPPGEK 675
Query: 247 GPPGTPIMPS----------PGDSTNSSENMYTIMNPIGQGAGRANFPLGP-GPEGPMAA 295
GP G P + PG S E +GA P GP G GP
Sbjct: 676 GPQGKPGLAGLPGADGPPGHPGKEGQSGE----------KGALGPPGPQGPIGYPGPRGV 725
Query: 296 MSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
A + GS G DG P G G D GE+ G
Sbjct: 726 KGADGVRGLKGSKGEKGEDGFP--------GFKGDMGLKGDRGEVGQIG 766
Score = 53.5 bits (127), Expect = 3e-07
Identities = 66/240 (27%), Positives = 77/240 (32%), Gaps = 18/240 (7%)
Query: 126 MSPRFPGGPR-PTLRMPSQPPAGLPGSQPLLPGAMEP-------SPRAQGHPSMGGPMQR 177
M P P GPR P + P G PGS + G E +P G +GGP
Sbjct: 1179 MGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGE 1238
Query: 178 VTPPRGMASVGPQSYGGGMRPP----PNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYS 232
G G PP P GP G P PG GP
Sbjct: 1239 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGE 1298
Query: 233 SSSPGSY--TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
PG GP G GPPG P P + + E G+ AG P GP
Sbjct: 1299 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA-EGRQGEKGAKGE-AGAEGPPGKTGPV 1356
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 349
GP P + G G GLP + G PG P G+ + G HP
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1416
Score = 50.1 bits (118), Expect = 3e-06
Identities = 58/215 (26%), Positives = 70/215 (32%), Gaps = 38/215 (17%)
Query: 156 PGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP-------PNSLAGPG- 207
P +EP +G P GP + PP GP G PP + L GP
Sbjct: 392 PAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPG 451
Query: 208 ----LPAMNMGPGVRGPWAS-PSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDST 261
LP G G +GP S + + + GPPG G G P + PG S
Sbjct: 452 TMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSG 511
Query: 262 NSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMD---GLPK 318
E+ PGP+GP P G G D G+P
Sbjct: 512 AKGESG------------------DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP- 552
Query: 319 SSPGAVA--GLSNAPGTPRDDGEMAAAGTFLHPFP 351
PGA G PG P D G G P P
Sbjct: 553 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587
Score = 49.3 bits (116), Expect = 5e-06
Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 42/175 (24%)
Query: 145 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVG----PQSYG------- 193
P G PG LPG ++ P ++G G + + PP G P + G
Sbjct: 1394 PMGPPG----LPG-LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD 1448
Query: 194 GGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 253
GG+ P L PG P + PG +GP + G++ P GPPG GPPG I
Sbjct: 1449 GGIPGPAGPLGPPGPPGL---PGPQGPKGN-KGSTGPAGQKGDSGLPGPPGSPGPPGEVI 1504
Query: 254 MPSP----------------------GDSTNSSENMYTIMNPIGQGAGRANFPLG 286
P P D ++ E ++ +N + Q FP+G
Sbjct: 1505 QPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMG 1559
Score = 46.6 bits (109), Expect = 3e-05
Identities = 71/287 (24%), Positives = 86/287 (29%), Gaps = 60/287 (20%)
Query: 107 APGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQ 166
APG AG + M P+ G P P + + P GLPG Q + E P Q
Sbjct: 623 APGQPGMAGVDGPPGPKGNMGPQ--GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP--Q 678
Query: 167 GHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP----PNSLAGP---------------- 206
G P + G PP G G + PP P GP
Sbjct: 679 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSK 738
Query: 207 ------GLPAMNMGPGVRGPWAS--------------PSGNSIPYSSSSPGSYTGPPGGG 246
G P G++G P G + P P G G
Sbjct: 739 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 798
Query: 247 GPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGP----GPEGPMAAMSAMEP 301
G PG P P G ++ + N G A P GP GP GP + A P
Sbjct: 799 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKP-GPRGQRGPTGPRGSRGARGP 857
Query: 302 HHVNGSLGSGDMDGLP----------KSSPGAVAGLSNAPGTPRDDG 338
G G+ DG P P G PG P DG
Sbjct: 858 TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 904
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/182 (25%), Positives = 57/182 (31%), Gaps = 32/182 (17%)
Query: 199 PPNSLAGPGLPA--------------------------MNMGPGVRGP--WASPSGNSIP 230
PPN GPG+PA + G V GP A P+G P
Sbjct: 357 PPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP 416
Query: 231 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
P G PG GPPG P +P M +M P G + P E
Sbjct: 417 PGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTM--LMLPFRYGGDGSKGPTISAQE 474
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 350
A+ + G G + G P P G S A G D G G P
Sbjct: 475 AQAQAILQQARIALRGPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 532
Query: 351 PS 352
P+
Sbjct: 533 PT 534
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/108 (27%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 240 TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
T PP PG P +++ + Y G+ A L GP GP M
Sbjct: 355 TSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIM 414
Query: 300 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
P + G G P PG G PG P DG GT L
Sbjct: 415 GPPGLQGPTG-------PPGDPGD-RGPPGRPGLPGADGLPGPPGTML 454
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 64.3 bits (155), Expect = 2e-10
Identities = 67/230 (29%), Positives = 81/230 (35%), Gaps = 21/230 (9%)
Query: 130 FPGGPRPTLRMPSQPPAGLPGSQ----PLLPGAMEPSPRA-QGHPSMGGPMQRVTPPRGM 184
FPG P P P G G P+ P P PR QG GP PP +
Sbjct: 1190 FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG-PPGPRGPQGPNGADGPQG---PPGSV 1245
Query: 185 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWAS--PSGNSIPYSSSSPGSYTGP 242
SVG G G + P PG P GV GP G + P ++ P GP
Sbjct: 1246 GSVG----GVGEKGEPGEAGNPGPPGE---AGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Query: 243 PGGGGPPGTP-IMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEP 301
PG GP G P + PGD E + +G G P PGP GP P
Sbjct: 1299 PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1358
Query: 302 HHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFP 351
G G+ +G + G + A G P G + G P P
Sbjct: 1359 PGKRGPPGAAGAEG--RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1406
Score = 61.6 bits (148), Expect = 1e-09
Identities = 70/237 (29%), Positives = 90/237 (37%), Gaps = 31/237 (13%)
Query: 128 PRFPG--GPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMA 185
P +PG GP+ + P P G G + A +P PR Q P+ + P G
Sbjct: 843 PGYPGRQGPKGSTGFPGFP--GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTG-- 898
Query: 186 SVGPQSYGGGMRPP-PNSLAGPGLPAMNMG-PGVRGPWASPSGNSIPYSSSSPGSYTGPP 243
GP+ GG PP P GP P +G PG +GP P + +P G TG
Sbjct: 899 KPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE-TGFQ 957
Query: 244 GGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ-GAGRANFPLG----PGPEGPMAAMSA 298
G GPPG + P T + PIG+ G P G PG G A
Sbjct: 958 GKTGPPGPGGVVGPQGPTGET-------GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD 1010
Query: 299 MEPHHVNGSLGSGDMDGLP--KSSPGAVA--------GLSNAPGTPRDDGEMAAAGT 345
P ++G G + G P + PGA G PG GE +AGT
Sbjct: 1011 PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1067
Score = 56.6 bits (135), Expect = 3e-08
Identities = 69/238 (28%), Positives = 80/238 (33%), Gaps = 29/238 (12%)
Query: 132 GGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQS 191
G P P PAGL G PG P AQG P + G PP + S G +
Sbjct: 1009 GDPGPQGISGKDGPAGLRG----FPGE-RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG 1063
Query: 192 YGGGMRPPPNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPG 250
G AGP GLP PG +GP P+G P G G GP G
Sbjct: 1064 SAG--------TAGPIGLPGR---PGPQGP-PGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1111
Query: 251 TPIMPSPGDSTNSSENMYTIMNPIGQGA----GRANFPLGPGPEGPMAAMSAME------ 300
P P S + I P +G+ G P PG +GP+ A
Sbjct: 1112 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1171
Query: 301 PHHVNGSLGS-GDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
P G G GD P GL PG P + GE G P P P
Sbjct: 1172 PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1229
Score = 56.2 bits (134), Expect = 4e-08
Identities = 68/252 (26%), Positives = 85/252 (33%), Gaps = 54/252 (21%)
Query: 131 PGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPR-----------AQGHPSMGGPMQRVT 179
PG P P P G PG + PGA R A+G P GP+
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKRGP-PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQG 1399
Query: 180 P-----PRGMAS----VGPQSYGG--GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNS 228
P P G+ VG Q G G PP + PGLP + PG +G P
Sbjct: 1400 PAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1459
Query: 229 IPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGP- 287
+ GPPG G G +P T +P +G G P GP
Sbjct: 1460 L----------IGPPGEQGEKGDRGLPG------------TQGSPGAKGDGGIPGPAGPL 1497
Query: 288 GPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
GP GP P GS G G +GL PG+P GE+ L
Sbjct: 1498 GPPGPPGLPGPQGPKGNKGSTGPAGQKG--------DSGLPGPPGSPGPPGEVIQPLPIL 1549
Query: 348 HPFPSESYSPGM 359
+ ++ GM
Sbjct: 1550 SSKKTRRHTEGM 1561
Score = 53.9 bits (128), Expect = 2e-07
Identities = 74/271 (27%), Positives = 92/271 (33%), Gaps = 47/271 (17%)
Query: 128 PRFPGGPRPTLRMPSQP----PAGLPGSQPLLPGAMEP--SPRAQGHPSMGGPMQRVTPP 181
P+ P GP M + P GLPG G + P +P A G P M G PP
Sbjct: 620 PQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR-GLLGPRGTPGAPGQPGMAGVDG---PP 675
Query: 182 RGMASVGPQSYGGGM----RPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPG 237
++GPQ G P P L GP P PG +GP P +P + PG
Sbjct: 676 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPG 733
Query: 238 -----------SYTGPPGGGGPPGTP----------IMPSPGDSTNSSENMYT-IMNPIG 275
GPPG GP G P + G E+ + +G
Sbjct: 734 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 793
Query: 276 QGAGRANF-PLGP----GPEGPMAAMSAMEPHHVNGSLGSGDMDGLP--KSSPGAVA--G 326
R +GP GPEGP +G G G+P PG G
Sbjct: 794 LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 853
Query: 327 LSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
+ PG P +GE A G P P P
Sbjct: 854 STGFPGFPGANGEKGARGVAGKPGPRGQRGP 884
Score = 53.5 bits (127), Expect = 3e-07
Identities = 67/229 (29%), Positives = 75/229 (32%), Gaps = 41/229 (17%)
Query: 128 PRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV 187
P PG Q P G PG + E PR G P GP + + PRG
Sbjct: 606 PGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPR--GLPGEAGP-RGLLGPRGTPGA 662
Query: 188 GPQSYGGGMRPPPNSLAGPGLPAMNMGP-GVRGPWASPSGNSIPYSSSSPGSYTGPPGGG 246
Q G+ PP P NMGP G GP GN P P GPPG
Sbjct: 663 PGQPGMAGVDGPPG-------PKGNMGPQGEPGP-PGQQGNPGPQGLPGPQGPIGPPGEK 714
Query: 247 GPPGTPIMPS----------PGDSTNSSENMYTIMNPIGQGAGRANFPLGP-GPEGPMAA 295
GP G P + PG S E +GA P GP G GP
Sbjct: 715 GPQGKPGLAGLPGADGPPGHPGKEGQSGE----------KGALGPPGPQGPIGYPGPRGV 764
Query: 296 MSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAG 344
A + GS G DG P G G D GE+ G
Sbjct: 765 KGADGVRGLKGSKGEKGEDGFP--------GFKGDMGLKGDRGEVGQIG 805
Score = 53.5 bits (127), Expect = 3e-07
Identities = 66/240 (27%), Positives = 77/240 (32%), Gaps = 18/240 (7%)
Query: 126 MSPRFPGGPR-PTLRMPSQPPAGLPGSQPLLPGAMEP-------SPRAQGHPSMGGPMQR 177
M P P GPR P + P G PGS + G E +P G +GGP
Sbjct: 1218 MGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGE 1277
Query: 178 VTPPRGMASVGPQSYGGGMRPP----PNSLAGP-GLPAMNMGPGVRGPWASPSGNSIPYS 232
G G PP P GP G P PG GP
Sbjct: 1278 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGE 1337
Query: 233 SSSPGSY--TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
PG GP G GPPG P P + + E G+ AG P GP
Sbjct: 1338 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA-EGRQGEKGAKGE-AGAEGPPGKTGPV 1395
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLP-KSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP 349
GP P + G G GLP + G PG P G+ + G HP
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1455
Score = 50.1 bits (118), Expect = 3e-06
Identities = 58/215 (26%), Positives = 70/215 (32%), Gaps = 38/215 (17%)
Query: 156 PGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP-------PNSLAGPG- 207
P +EP +G P GP + PP GP G PP + L GP
Sbjct: 431 PAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPG 490
Query: 208 ----LPAMNMGPGVRGPWAS-PSGNSIPYSSSSPGSYTGPPGGGGPPGTP-IMPSPGDST 261
LP G G +GP S + + + GPPG G G P + PG S
Sbjct: 491 TMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSG 550
Query: 262 NSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMD---GLPK 318
E+ PGP+GP P G G D G+P
Sbjct: 551 AKGESG------------------DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMP- 591
Query: 319 SSPGAVA--GLSNAPGTPRDDGEMAAAGTFLHPFP 351
PGA G PG P D G G P P
Sbjct: 592 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626
Score = 49.3 bits (116), Expect = 5e-06
Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 42/175 (24%)
Query: 145 PAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVG----PQSYG------- 193
P G PG LPG ++ P ++G G + + PP G P + G
Sbjct: 1433 PMGPPG----LPG-LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGD 1487
Query: 194 GGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPI 253
GG+ P L PG P + PG +GP + G++ P GPPG GPPG I
Sbjct: 1488 GGIPGPAGPLGPPGPPGL---PGPQGPKGN-KGSTGPAGQKGDSGLPGPPGSPGPPGEVI 1543
Query: 254 MPSP----------------------GDSTNSSENMYTIMNPIGQGAGRANFPLG 286
P P D ++ E ++ +N + Q FP+G
Sbjct: 1544 QPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMG 1598
Score = 46.6 bits (109), Expect = 3e-05
Identities = 71/287 (24%), Positives = 86/287 (29%), Gaps = 60/287 (20%)
Query: 107 APGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQ 166
APG AG + M P+ G P P + + P GLPG Q + E P Q
Sbjct: 662 APGQPGMAGVDGPPGPKGNMGPQ--GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP--Q 717
Query: 167 GHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPP----PNSLAGP---------------- 206
G P + G PP G G + PP P GP
Sbjct: 718 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSK 777
Query: 207 ------GLPAMNMGPGVRGPWAS--------------PSGNSIPYSSSSPGSYTGPPGGG 246
G P G++G P G + P P G G
Sbjct: 778 GEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKL 837
Query: 247 GPPGTPIMPS-PGDSTNSSENMYTIMNPIGQGAGRANFPLGP----GPEGPMAAMSAMEP 301
G PG P P G ++ + N G A P GP GP GP + A P
Sbjct: 838 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKP-GPRGQRGPTGPRGSRGARGP 896
Query: 302 HHVNGSLGSGDMDGLP----------KSSPGAVAGLSNAPGTPRDDG 338
G G+ DG P P G PG P DG
Sbjct: 897 TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 943
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/182 (25%), Positives = 57/182 (31%), Gaps = 32/182 (17%)
Query: 199 PPNSLAGPGLPA--------------------------MNMGPGVRGP--WASPSGNSIP 230
PPN GPG+PA + G V GP A P+G P
Sbjct: 396 PPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGP 455
Query: 231 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE 290
P G PG GPPG P +P M +M P G + P E
Sbjct: 456 PGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTM--LMLPFRYGGDGSKGPTISAQE 513
Query: 291 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF 350
A+ + G G + G P P G S A G D G G P
Sbjct: 514 AQAQAILQQARIALRGPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPG 571
Query: 351 PS 352
P+
Sbjct: 572 PT 573
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/108 (27%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 240 TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM 299
T PP PG P +++ + Y G+ A L GP GP M
Sbjct: 394 TSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIM 453
Query: 300 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFL 347
P + G G P PG G PG P DG GT L
Sbjct: 454 GPPGLQGPTG-------PPGDPGD-RGPPGRPGLPGADGLPGPPGTML 493
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,734,175
Number of Sequences: 37866
Number of extensions: 1632973
Number of successful extensions: 16150
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 1304
Number of HSP's that attempted gapping in prelim test: 6896
Number of HSP's gapped (non-prelim): 4572
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.