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Search of human proteins with 58218981
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58218981 single stranded DNA binding protein 3 isoform c
[Homo sapiens]
(361 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 785 0.0
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 770 0.0
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 736 0.0
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 654 0.0
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 575 e-164
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 563 e-160
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 91 2e-18
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 87 3e-17
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 87 3e-17
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 80 2e-15
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 80 3e-15
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 79 5e-15
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 79 6e-15
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 77 2e-14
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 77 2e-14
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 77 2e-14
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 77 2e-14
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 77 2e-14
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 76 4e-14
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 75 7e-14
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 75 9e-14
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 75 9e-14
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 75 9e-14
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 74 2e-13
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 74 3e-13
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 72 6e-13
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 72 1e-12
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 72 1e-12
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 72 1e-12
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 71 1e-12
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 785 bits (2026), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH
Sbjct: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
Query: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF
Sbjct: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
Query: 121 FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPR 180
FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPR
Sbjct: 121 FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPR 180
Query: 181 GMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYV 240
GMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYV
Sbjct: 181 GMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYV 240
Query: 241 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGME 300
GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGME
Sbjct: 241 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGME 300
Query: 301 PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSMTMS 360
PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSMTMS
Sbjct: 301 PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSMTMS 360
Query: 361 V 361
V
Sbjct: 361 V 361
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 770 bits (1988), Expect = 0.0
Identities = 361/388 (93%), Positives = 361/388 (93%), Gaps = 27/388 (6%)
Query: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH
Sbjct: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
Query: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF
Sbjct: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
Query: 121 FQ---------------------------PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 153
FQ PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL
Sbjct: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 213
LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG
Sbjct: 181 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 240
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 273
PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP
Sbjct: 241 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 300
Query: 274 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 333
VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT
Sbjct: 301 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
Query: 334 PRDDGELGGNFLHSFQNDNYSPSMTMSV 361
PRDDGELGGNFLHSFQNDNYSPSMTMSV
Sbjct: 361 PRDDGELGGNFLHSFQNDNYSPSMTMSV 388
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 736 bits (1901), Expect = 0.0
Identities = 348/368 (94%), Positives = 349/368 (94%), Gaps = 7/368 (1%)
Query: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH
Sbjct: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
Query: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF
Sbjct: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
Query: 121 FQ--PFMSPRYAGGP---RPPIRMG--NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSM 173
FQ P P P P MG +QPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSM
Sbjct: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSM 180
Query: 174 QRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS 233
QRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS
Sbjct: 181 QRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS 240
Query: 234 SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 293
SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM
Sbjct: 241 SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 300
Query: 294 GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNY 353
GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNY
Sbjct: 301 GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNY 360
Query: 354 SPSMTMSV 361
SPSMTMSV
Sbjct: 361 SPSMTMSV 368
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 654 bits (1686), Expect = 0.0
Identities = 303/364 (83%), Positives = 329/364 (90%), Gaps = 6/364 (1%)
Query: 1 MFAKGKG--SAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 58
M+ KGK SAVPSD QAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
Query: 59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP 118
LHSWWCVFWDLYCAAPERR+TCEHSSEAKAFHDYSAAAAPSPVLGNIPP DGMP GP+PP
Sbjct: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
Query: 119 GFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP 178
GFFQPFMSPRY GGPRPP+R+ NQ GGVPG+QPLLP+ MDPTRQQGHPNMGG MQRM P
Sbjct: 121 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP 180
Query: 179 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 237
PRGM P+ GPQNYG MRPP N+L GP MPG+NMGPG GRPWPNP +ANSIPYSS+SPG
Sbjct: 181 PRGMVPL--GPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG 238
Query: 238 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG 297
YVGPPGGGGPPGTPIMPSPADSTNS DN+YT++N VPPG +R NFPMGPGSDGPMGG+G
Sbjct: 239 NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLG 298
Query: 298 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM 357
GME HHMNGSLGSGD+D + KNSPNN+S +SN PGTPRDDGE+GGNFL+ FQ+++YSPSM
Sbjct: 299 GMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQSESYSPSM 357
Query: 358 TMSV 361
TMSV
Sbjct: 358 TMSV 361
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 575 bits (1483), Expect = e-164
Identities = 267/366 (72%), Positives = 309/366 (84%), Gaps = 8/366 (2%)
Query: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 120 FFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT-RQQGHPNMGGSMQRMNP 178
FFQPFMSPR+ GGPRP +RM +QPP G+PG+QPLLP +M+P+ R QGHP+MGG MQR+ P
Sbjct: 121 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP 180
Query: 179 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 237
PRGM + GPQ+YG GMRPPPNSL GP +P +NMGPG PW +P S NSIPYSSSSPG
Sbjct: 181 PRGMASV--GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPG 237
Query: 238 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG 297
+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT++NP+ G R+NFP+GPG +GPM M
Sbjct: 238 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS 297
Query: 298 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHSFQNDNYSP 355
MEPHH+NGSLGSGD+DGLPK+SP ++G+SN PGTPRDDGE+ G FLH F +++YSP
Sbjct: 298 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP 357
Query: 356 SMTMSV 361
MTMSV
Sbjct: 358 GMTMSV 363
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 563 bits (1450), Expect = e-160
Identities = 267/388 (68%), Positives = 309/388 (79%), Gaps = 30/388 (7%)
Query: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 120 FF----------------------QPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 157
FF QPFMSPR+ GGPRP +RM +QPP G+PG+QPLLP +
Sbjct: 121 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA 180
Query: 158 MDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPG 215
M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P +NMGPG
Sbjct: 181 MEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPAMNMGPG 238
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 275
PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT++NP+
Sbjct: 239 VRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIG 297
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN PGTPR
Sbjct: 298 QGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPR 357
Query: 336 DDGEL--GGNFLHSFQNDNYSPSMTMSV 361
DDGE+ G FLH F +++YSP MTMSV
Sbjct: 358 DDGEMAAAGTFLHPFPSESYSPGMTMSV 385
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 90.5 bits (223), Expect = 2e-18
Identities = 91/302 (30%), Positives = 104/302 (34%), Gaps = 43/302 (14%)
Query: 83 SSEAKAFHDYSAAAAPSPVLGN---IPPNDG-----------MPGGPIPPGFFQPFMSPR 128
SS D S +PS + GN PP G P GP P G QP P
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPP 73
Query: 129 YAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMD---------PTRQQGHPNMGGSMQRMNP 178
G P+ PP + GN+P G P +P P P + QG P GG+ + P
Sbjct: 74 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 133
Query: 179 PRGMGPMGPGPQ--NYGSGMRPPPNSLGPAMPGINMGPGAGRP-----WPNPNSANSIPY 231
P P GP PQ N G PP GP G N + P P P N
Sbjct: 134 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQG 193
Query: 232 SSSSPGTYVGPPGGGG-------PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 284
PG GPP GG PPG P P P S P P N P
Sbjct: 194 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQP 253
Query: 285 MGPGSDGPMGGMGGMEPHHMNGSLG---SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
GP P G G P N G G G P + +PPG P+ G
Sbjct: 254 QGP--PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG 311
Query: 342 GN 343
GN
Sbjct: 312 GN 313
Score = 74.7 bits (182), Expect = 1e-13
Identities = 63/198 (31%), Positives = 71/198 (35%), Gaps = 43/198 (21%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
PP G P GP P G QP P G P+ PP + GN+P G P P + Q
Sbjct: 238 PP--GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP-----------PGKPQ 284
Query: 165 GHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPN 224
G P GGS R + P GP PQ PPP PG GP P
Sbjct: 285 GPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP------PPGKPQGP--------PP 330
Query: 225 SANSIPYSSSSPGTYVGPPGGGG--------PPGTPIMPSPADSTNSSDNIYTMINPVPP 276
+ P PG GPP GG PPG P P + N P PP
Sbjct: 331 QGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQ-------GPPPP 383
Query: 277 GGSRSNFPMGPGSDGPMG 294
G P P + P G
Sbjct: 384 AGGNPQQPQAPPAGQPQG 401
Score = 58.2 bits (139), Expect = 1e-08
Identities = 55/163 (33%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 98 PSPVLGNIP---PNDGMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVPGTQPL 153
P P GN P P G P GP P G + S G P+ PP + GNQP G P
Sbjct: 266 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP----- 320
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYG---SGMRPPPNSLGPAMPGI 210
P + QG P GG+ + PP G P GP PQ S PP GP
Sbjct: 321 -----PPGKPQGPPPQGGNKPQGPPPPGK-PQGPPPQGGSKSRSARSPPGKPQGPPQQEG 374
Query: 211 NMGPGAGRP-WPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 252
N G P NP + P + P PP GG P P
Sbjct: 375 NNPQGPPPPAGGNPQQPQAPP--AGQPQGPPRPPQGGRPSRPP 415
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 86.7 bits (213), Expect = 3e-17
Identities = 87/289 (30%), Positives = 99/289 (34%), Gaps = 35/289 (12%)
Query: 96 AAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT----- 150
A P G P DG+PGGP G P G P PP G G PG
Sbjct: 515 AGPRGAAGE-PGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG 573
Query: 151 QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG------ 204
QP + P G P G P G GP GP +N +G + PP G
Sbjct: 574 QPGVMGFPGPKGNDGAPGKNGER---GGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Query: 205 ----PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
P G+ PG G P P N P G G PGG G G P P
Sbjct: 631 DTGPPGPQGLQGLPGTGGP-PGENGKPGEPGPKGDAGA-PGAPGGKGDAGAPGERGPPGL 688
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP----------GSDGPMGGMGGMEPHHMNGSLGS 310
+ P P GG + P GP G G GG+G P G G
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGG 748
Query: 311 GDIDGLP-KNSPNNISGISNPP---GTPRDDGELGGNFLHSFQNDNYSP 355
DG+P K+ P +G PP G P D GE G L SP
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSP 797
Score = 80.9 bits (198), Expect = 2e-15
Identities = 85/284 (29%), Positives = 104/284 (36%), Gaps = 60/284 (21%)
Query: 105 IPPNDGMPGGPIPPGFFQPF------MSPRY--------------AGGPRPPIRMGNQPP 144
IP G PG P PPG + SP+Y AG P P G P
Sbjct: 125 IPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGP---AGPPGP 181
Query: 145 GGVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNS 202
G PGT P P S G P G PP +GP GP ++ SG P
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGE 241
Query: 203 LG-PAMPGINMGPGAGRPW----------------------PNPNSANSIPYSSSSPGTY 239
G P PGI GP AG P P N +P + +PG
Sbjct: 242 RGLPGPPGIK-GP-AGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP- 298
Query: 240 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG-GSRSNFPMGPGSDGPMGGMGG 298
+GP G G G P +P A + + + P PPG + FP PG+ G +G G
Sbjct: 299 MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS 358
Query: 299 MEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGG 342
GS G+ G P P +G PPG P +G GG
Sbjct: 359 ------PGSNGAPGQRGEP--GPQGHAGAQGPPGPPGINGSPGG 394
Score = 75.5 bits (184), Expect = 7e-14
Identities = 79/250 (31%), Positives = 89/250 (35%), Gaps = 46/250 (18%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTRQ 163
P + G G P PG P SP G PP P G PG Q P
Sbjct: 776 PGDKGEGGAPGLPGIAGPRGSPGERGETGPP------GPAGFPGAPGQNGEPGGKGERGA 829
Query: 164 QGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPN 222
G GG PP G GP G PGPQ G R P GP G PGA R P
Sbjct: 830 PGEKGEGGPPGVAGPPGGSGPAGPPGPQGV-KGERGSPG--GPGAAGF---PGA-RGLPG 882
Query: 223 PNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSN 282
P +N P GPPG G PG P PA +T + P PG S
Sbjct: 883 PPGSNGNP----------GPPGPSGSPGKDGPPGPAGNTGA---------PGSPGVSGPK 923
Query: 283 FPMG-------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP----KNSPNNISGISNPP 331
G PG+ GP G G + + G+ G G+P P + G S P
Sbjct: 924 GDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKP 983
Query: 332 GTPRDDGELG 341
G GE G
Sbjct: 984 GANGLSGERG 993
Score = 72.4 bits (176), Expect = 6e-13
Identities = 85/256 (33%), Positives = 95/256 (37%), Gaps = 39/256 (15%)
Query: 107 PNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGH 166
PN +P G QP +P RPP G Q P G PG + + DP G
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPT-----RPPNGQGPQGPKGDPGPPGIPGRNGDP----GI 125
Query: 167 PNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG-AGRPW-PNPN 224
P GS PP GPQNY G A+ G+ PG AG P P P
Sbjct: 126 PGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPP 185
Query: 225 SANSIPYSSSSPGTYVGPP------GGGGPPGTP--IMPS-PADSTNSSDNIYTMINPVP 275
+ P S SPG Y GPP G GPPG P I PS PA S P
Sbjct: 186 GTSGHPGSPGSPG-YQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG------RPGR 238
Query: 276 PGGSRSNFPMGPGSDGPMG--GMGGMEPHH----MNGSLGSGDIDGLPKNS----PNNIS 325
PG P PG GP G G GM+ H NG G GL + N
Sbjct: 239 PG--ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAP 296
Query: 326 GISNPPGTPRDDGELG 341
G P G P + G G
Sbjct: 297 GPMGPRGAPGERGRPG 312
Score = 69.7 bits (169), Expect = 4e-12
Identities = 76/251 (30%), Positives = 86/251 (34%), Gaps = 35/251 (13%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-PPG--GVPGTQ-----------PLLP 155
G PGGP GF P G P PP GN PPG G PG P P
Sbjct: 864 GSPGGPGAAGF------PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Query: 156 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGP 214
P G P GS PP GP+G G+ PP GP PG
Sbjct: 918 GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVK 977
Query: 215 G-AGRPWPNPNSA-NSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 270
G +G+P N S P PG G PG G PG+ +P S +
Sbjct: 978 GESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGEN 1037
Query: 271 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP 330
+P PG P PG GP+G G +G G G P G P
Sbjct: 1038 GSPGAPGA-----PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPG-----PAGSRGAPGP 1087
Query: 331 PGTPRDDGELG 341
G D GE G
Sbjct: 1088 QGPRGDKGETG 1098
Score = 67.8 bits (164), Expect = 1e-11
Identities = 70/240 (29%), Positives = 85/240 (35%), Gaps = 27/240 (11%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P +G+ G PPG P P AG P R GN G+PG P + G
Sbjct: 983 PGANGLSGERGPPG---PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS-PGGKGDRGENG 1038
Query: 166 HPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNS 225
P G+ PP GP+GP ++ G GPA P GP R P P
Sbjct: 1039 SPGAPGAPGHPGPP---GPVGPAGKSGDRG------ESGPAGPAGAPGPAGSRGAPGPQG 1089
Query: 226 ANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNF 283
+ G G G G PG P P PA + + P P G
Sbjct: 1090 PRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGS------PGPAGPRGPVG 1143
Query: 284 PMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGG 342
P GP G DG G G + P G+ G +G P + G PPG P G G
Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH-----PGQPGPPGPPGAPGPCCG 1198
Score = 67.4 bits (163), Expect = 2e-11
Identities = 76/255 (29%), Positives = 89/255 (34%), Gaps = 51/255 (20%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGH- 166
+DG PG P PPG AG P P G P G PG+ P QGH
Sbjct: 328 SDGQPGPPGPPGT---------AGFPGSPGAKGEVGPAGSPGSNGA-PGQRGEPGPQGHA 377
Query: 167 --------PNMGGSMQRMNPPRGMGPMGPG--PQNYG-SGMRPPPNSLGP-AMPGINMGP 214
P + GS P G G MGP P G G R PP G PG+ G
Sbjct: 378 GAQGPPGPPGINGS------PGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGA 431
Query: 215 GA-------GRPWPNPNSANS-IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
G G P P + IP + G G G G PG +P A +
Sbjct: 432 GEPGKNGAKGEPGPRGERGEAGIPGVPGAKGED-GKDGSPGEPGANGLPGAAGERGAPG- 489
Query: 267 IYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISG 326
P P G PG GP G G P G+ G DG+P + G
Sbjct: 490 ---FRGPAGPNGI-------PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP--GMRG 537
Query: 327 ISNPPGTPRDDGELG 341
+ PG P DG+ G
Sbjct: 538 MPGSPGGPGSDGKPG 552
Score = 67.4 bits (163), Expect = 2e-11
Identities = 79/264 (29%), Positives = 92/264 (34%), Gaps = 55/264 (20%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+ GG PPG P AG P PP G G+PG + L S P +G P
Sbjct: 693 GLRGGAGPPG---PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL-GSPGPKGDKGEPGG 748
Query: 170 GGS--MQRMNPPRG----MGPMGPG--PQNYGSGMRP-------------------PPNS 202
G+ + + PRG +GP GP P + G G P PP
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 203 LG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADST 261
G P PG N PG P P GPPGG GP G P P
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGE-----GGPPGVAGPPGGSGPAGPP-GPQGVKGE 862
Query: 262 NSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP 321
S P G + FP G GP G G P +GS G DG P +
Sbjct: 863 RGS----------PGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK---DGPPGPAG 909
Query: 322 N----NISGISNPPGTPRDDGELG 341
N G+S P G GE G
Sbjct: 910 NTGAPGSPGVSGPKGDAGQPGEKG 933
Score = 63.9 bits (154), Expect = 2e-10
Identities = 73/236 (30%), Positives = 81/236 (34%), Gaps = 51/236 (21%)
Query: 109 DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPN 168
DG PG P G P AG P G P G+PG + P ++G P
Sbjct: 467 DGSPGEPGANGL------PGAAGERGAPGFRGPAGPNGIPGEK-------GPAGERGAPG 513
Query: 169 MGGSMQRMNPPRG-MGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSA 226
G PRG G G G GMR MPG GPG+ G+P P
Sbjct: 514 PAG-------PRGAAGEPGRDGVPGGPGMR--------GMPGSPGGPGSDGKPGP----- 553
Query: 227 NSIPYSSSSPGTYVGPPGGGGPPGTP-IMPSPADSTNSSDNIYTMINPVPPGGSRSNFPM 285
P S G GPPG GP G P +M P N P P
Sbjct: 554 ---PGSQGESGR-PGPPGPSGPRGQPGVMGFPGPKGNDG---------APGKNGERGGPG 600
Query: 286 GPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
GPG GP G G P G G G G P G+ PGT GE G
Sbjct: 601 GPGPQGPPGKNGETGPQGPPGPTGPGGDKG--DTGPPGPQGLQGLPGTGGPPGENG 654
Score = 55.8 bits (133), Expect = 6e-08
Identities = 57/191 (29%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 178 PPRGMGPMGP----GP-----QNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSAN 227
PP G GP GP GP +N G+ P S G P PGI G +P +
Sbjct: 98 PPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDS 157
Query: 228 SIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG- 286
S + G G PG GPPG P P + S + P PG + + P G
Sbjct: 158 YDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGP 217
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLH 346
PG+ GP G G +G G GLP P I G + PG P G G + +
Sbjct: 218 PGAIGPSGPAG---KDGESGRPGRPGERGLP--GPPGIKGPAGIPGFPGMKGHRGFDGRN 272
Query: 347 SFQNDNYSPSM 357
+ + +P +
Sbjct: 273 GEKGETGAPGL 283
Score = 42.4 bits (98), Expect = 7e-04
Identities = 47/164 (28%), Positives = 54/164 (32%), Gaps = 31/164 (18%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPI----RMGNQPPGGVPGTQ-- 151
P PV D GP P R A GP+ P G + G+ G +
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 152 ---PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMP 208
P P S P QQG G P GP+GP G P +GP P
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPG------PAGPRGPVGPSGPPGKDGTSGHPGPIGPPGP 1165
Query: 209 GINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 252
N G S SPG + G PG GPPG P
Sbjct: 1166 RGNRGERG---------------SEGSPG-HPGQPGPPGPPGAP 1193
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 86.7 bits (213), Expect = 3e-17
Identities = 85/267 (31%), Positives = 96/267 (35%), Gaps = 36/267 (13%)
Query: 98 PSPVLGNIP----PNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 153
PSP GN P P G P GP P G +P GP PP + PP G P
Sbjct: 39 PSPQGGNKPQGPPPPPGKPQGPPPQGGNKP-------QGPPPPGKPQGPPPQGDKSRSPR 91
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQ--NYGSGMRPPPNSLGPAMPGIN 211
P P + QG P GG+ + PP P GP PQ N G PP GP G
Sbjct: 92 SP----PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDK 147
Query: 212 ----MGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG-------PPGTPIMPSP-AD 259
P P P N PG GPP GG PPG P P P D
Sbjct: 148 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGD 207
Query: 260 STNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG---SGDIDGL 316
+ SS + PP G N P GP P G G P N G G G
Sbjct: 208 KSRSSQSPPGKPQGPPPQG--GNQPQGP--PPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 263
Query: 317 PKNSPNNISGISNPPGTPRDDGELGGN 343
P + +PPG P+ + GN
Sbjct: 264 PAQGGSKSQSARSPPGKPQGPPQQEGN 290
Score = 79.3 bits (194), Expect = 5e-15
Identities = 74/227 (32%), Positives = 84/227 (37%), Gaps = 40/227 (17%)
Query: 98 PSPVLGNIP----PNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ------PPG-- 145
P P GN P P G P GP P G +P P G P+ P G++ PPG
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGNRP-QGPPPPGKPQGPPPQGDKSRSPRSPPGKP 158
Query: 146 -GVP---GTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQ--NYGSGMRPP 199
G P G QP P P + QG P GG + PP G P GP PQ S PP
Sbjct: 159 QGPPPQGGNQPQGP-PPPPGKPQGPPPQGGKKPQGPPPPGK-PQGPPPQGDKSRSSQSPP 216
Query: 200 PNSLGPAMPGINM----GPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG-------- 247
GP G N P G+P P + P PG GPP GG
Sbjct: 217 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARS 276
Query: 248 PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG 294
PPG P P + N P PP G P P + P G
Sbjct: 277 PPGKPQGPPQQEGNNPQ-------GPPPPAGGNPQQPQAPPAGQPQG 316
Score = 55.5 bits (132), Expect = 7e-08
Identities = 58/196 (29%), Positives = 67/196 (34%), Gaps = 20/196 (10%)
Query: 164 QGHPNMGGSMQRMNPPRGMGPMGPGPQ--NYGSGMRPPPNSLGPAMPGIN----MGPGAG 217
QG GG+ + PP P GP PQ N G PP GP G P
Sbjct: 37 QGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 96
Query: 218 RPWPNPNSANSIPYSSSSPGTYVGPPGGGG-------PPGTPIMPSPADSTNSSDNI--Y 268
P P N PG GPP GG PPG P P P + S
Sbjct: 97 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPG 156
Query: 269 TMINPVPPGGSR-SNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGI 327
P P GG++ P PG GG +P G G G P + S
Sbjct: 157 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKP---QGPPPPGKPQGPPPQGDKSRSS- 212
Query: 328 SNPPGTPRDDGELGGN 343
+PPG P+ GGN
Sbjct: 213 QSPPGKPQGPPPQGGN 228
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/173 (31%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 98 PSPVLGNIP----PNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ------PPGGV 147
P P GN P P G P GP P G +P P G P+ P G++ PPG
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQGGKKP-QGPPPPGKPQGPPPQGDKSRSSQSPPGKP 219
Query: 148 PGTQPLLPNSMD-----PTRQQGHPNMGGSMQRMNPPRG--MGPMGPGPQNYGSGMRPPP 200
G P N P + QG P GG+ + PP G GP G S PP
Sbjct: 220 QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPG 279
Query: 201 NSLGPAMPGINMGPGAGRP-WPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 252
GP N G P NP + P + P PP GG P P
Sbjct: 280 KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP--AGQPQGPPRPPQGGRPSRPP 330
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 80.5 bits (197), Expect = 2e-15
Identities = 79/267 (29%), Positives = 96/267 (35%), Gaps = 53/267 (19%)
Query: 96 AAPSPVLGNIPPNDGMPGGPI------PPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPG 149
AA +P IP G+PG P PPGF G P P G + P G+PG
Sbjct: 268 AAGAPGQPGIPGTKGLPGAPGIAGPPGPPGF----------GKPGLPGLKGERGPAGLPG 317
Query: 150 TQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPG 209
P P G P + G PP MGP GP G+ P GPA P
Sbjct: 318 G-PGAKGEQGPAGLPGKPGLTG------PPGNMGPQGPKGIPGSHGLPGPKGETGPAGP- 369
Query: 210 INMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYT 269
AG +P P S PG Y G PG GP G P +P P
Sbjct: 370 ------AG--YPGAKGERGSPGSDGKPG-YPGKPGLDGPKGNPGLPGPKGDPGVG-GPPG 419
Query: 270 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP--KNSPNN---- 323
+ PV P G++ PG +G G G G +G I G P K P +
Sbjct: 420 LPGPVGPAGAKGM----PGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPP 475
Query: 324 ---------ISGISNPPGTPRDDGELG 341
++G + PPG P G G
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRGHSG 502
Score = 68.9 bits (167), Expect = 7e-12
Identities = 78/252 (30%), Positives = 89/252 (35%), Gaps = 45/252 (17%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPG-----GVPGTQ----PLLPN 156
P G G P P GF +P G MG PG G+PG Q P P
Sbjct: 158 PGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPP 217
Query: 157 SMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
+ + G P G P MGP+G PGPQ PP GP G
Sbjct: 218 GVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQG-------PPGERGP--------EG 262
Query: 216 AGRPWPNPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 273
G+P A P PGT G PG GPPG P P + + P
Sbjct: 263 IGKP-----GAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGL-P 316
Query: 274 VPPGGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 329
PG P G PG GP G MG P + GS GLP P +G +
Sbjct: 317 GGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGS------HGLP--GPKGETGPAG 368
Query: 330 PPGTPRDDGELG 341
P G P GE G
Sbjct: 369 PAGYPGAKGERG 380
Score = 60.1 bits (144), Expect = 3e-09
Identities = 56/159 (35%), Positives = 64/159 (40%), Gaps = 27/159 (16%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P +DG PG P PG P G P P G+ GG PG LP + P +G
Sbjct: 382 PGSDGKPGYPGKPGLDGP------KGNPGLPGPKGDPGVGGPPG----LPGPVGPAGAKG 431
Query: 166 HPNMGGSM-QRMNP--PRGMGPMGPG-----PQNYGSGMRP-PPNSLGPAMPGINMGPGA 216
P G R P P GP+GP P + G P PP G A G+N G
Sbjct: 432 MPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGP 491
Query: 217 GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMP 255
P P P S PG GPPG GPPG +MP
Sbjct: 492 PGP-PGPRG------HSGEPGL-PGPPGPPGPPGQAVMP 522
Score = 57.8 bits (138), Expect = 2e-08
Identities = 58/178 (32%), Positives = 67/178 (37%), Gaps = 32/178 (17%)
Query: 171 GSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANS 228
G PP GP G PGP PP G PG+ PG G P P+
Sbjct: 57 GEQGTPGPPGPAGPRGHPGPSG-------PPGKPGYGSPGLQGEPGLPGPPGPSAVGKPG 109
Query: 229 IPYSSSSPGTY--------VGP---PGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
+P PG VGP PG GPPG P +P PA I P G
Sbjct: 110 VPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPA-------GISVPGKPGQQG 162
Query: 278 GSRSNFPMG-PGSDGPMG--GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPG 332
+ + P G PG G G GM G + G+ G GLP P +G S PPG
Sbjct: 163 PTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLP--GPQGPTGPSGPPG 218
Score = 48.1 bits (113), Expect = 1e-05
Identities = 48/161 (29%), Positives = 57/161 (35%), Gaps = 21/161 (13%)
Query: 212 MGPGAGRPWPNPNSANSIPYSSSSPGTYV-------GPPGGGGPPGTPIMPSPADSTN-S 263
M G P PN + IPY+ S G V GPPG GP G P P
Sbjct: 27 MPTGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYG 86
Query: 264 SDNIYTMIN-PVPPGGSR------SNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
S + P PPG S P PG GP G G + P + G G G+
Sbjct: 87 SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGI 146
Query: 317 PKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM 357
P P IS PG P G G F + +P +
Sbjct: 147 P--GPAGIS----VPGKPGQQGPTGAPGPRGFPGEKGAPGV 181
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 80.1 bits (196), Expect = 3e-15
Identities = 76/237 (32%), Positives = 90/237 (37%), Gaps = 23/237 (9%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PG P + G P PP G P G PG LP P GHP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPG----LPGEPGPVGGGGHPGQ 1159
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P G GP Q G N P +PG++ G G P +
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG-GLPGIPGNPGL 1218
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG-GSRSNFPMGPG 288
P PG + G PG GPPG P P PA NP P G R F PG
Sbjct: 1219 PGPKGEPG-FHGFPGVQGPPGPPGSPGPALEGPKG-------NPGPQGPPGRPGFQGLPG 1270
Query: 289 SDGPMG--GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGN 343
+GP G G GG++ G+ G + GLP + G PPG + G G N
Sbjct: 1271 PEGPPGLPGNGGIKGE--KGNPGQPGLPGLP-----GLKGDQGPPGLQGNPGRPGLN 1320
Score = 69.7 bits (169), Expect = 4e-12
Identities = 73/241 (30%), Positives = 96/241 (39%), Gaps = 37/241 (15%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
+DG+PG P P G P P + G P P G+ G PG Q +P ++G P
Sbjct: 79 DDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHD---GAPGPQG-IPGCNGTKGERGFP 134
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNS-LGPAMPGINMGPGAGRPWPNPNSA 226
G PP GP G GM+ P S + ++PG PG +P P
Sbjct: 135 GSPGFPGLQGPP---GPPGI------PGMKGEPGSIIMSSLPGPKGNPG----YPGPPGI 181
Query: 227 NSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 284
+P + PG GPPG GPPG P +P P + +N P G +
Sbjct: 182 QGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG--------LNFQGPKGEKGE-- 231
Query: 285 MGPGSDGPMGGMGGM--EPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTP-RDDGEL 340
G GP G G + + ++ GD GLP P GI PPG P + GE
Sbjct: 232 --QGLQGPPGPPGQISEQKRPIDVEFQKGD-QGLPGDRGPPGPPGIRGPPGPPGGEKGEK 288
Query: 341 G 341
G
Sbjct: 289 G 289
Score = 68.9 bits (167), Expect = 7e-12
Identities = 90/306 (29%), Positives = 108/306 (35%), Gaps = 65/306 (21%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPG-----FFQPFMSPRYAGGPRPPIRMGNQPPGGV 147
S A P L P DG+PG P P G F+ P G P P GN P G
Sbjct: 565 SPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGP--PGNPGLPGLPGNIGPMGP 622
Query: 148 PGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-----PG----PQNYGS---- 194
PG P P ++G + G+ + P G G PG P N G
Sbjct: 623 PGFGP-----PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 195 GMRPPPNSLG-PAMPGINMG------PGAGRPW-PNPNSANSIPYSSSSPGTYVGPPGGG 246
G+ P G P +PGI PG G P P P IP +PGT G G
Sbjct: 678 GLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGT-PGRIGLE 736
Query: 247 GPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----------GSRSNFPMGPGS------ 289
GPPG P P P P PPG G R FP PG
Sbjct: 737 GPPGPPGFPGP----KGEPGFALPGPPGPPGLPGFKGALGPKGDR-GFPGPPGPPGRTGL 791
Query: 290 DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQ 349
DG G G + P+ G +G + G+ G+ PPG P G +G LH
Sbjct: 792 DGLPGPKGDVGPNGQPGPMGPPGLPGI---------GVQGPPGPPGIPGPIGQPGLHGIP 842
Query: 350 NDNYSP 355
+ P
Sbjct: 843 GEKGDP 848
Score = 67.8 bits (164), Expect = 1e-11
Identities = 79/264 (29%), Positives = 91/264 (34%), Gaps = 39/264 (14%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT--------QPLLPNS 157
P N G+PG P P G + G P PP G G+PG QP N
Sbjct: 1139 PGNPGLPGEPGPVG------GGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 158 MDPTRQ--QGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPP--PNSLGPAMPGINM 212
P G GG P GP G PG + PP P S GPA+ G
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKG 1252
Query: 213 GPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG------PPGTPIMPSPADSTNSSDN 266
PG P P +P PG PG GG PG P +P
Sbjct: 1253 NPGPQGP-PGRPGFQGLPGPEGPPGL----PGNGGIKGEKGNPGQPGLPGLPGLKGDQGP 1307
Query: 267 IYTMINPVPPG--GSRSN-----FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN 319
NP PG G + + P PG GP G G P G +G GLP
Sbjct: 1308 PGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGP 1367
Query: 320 SPNN--ISGISNPPGTPRDDGELG 341
S + I G + PPG P G G
Sbjct: 1368 SGQSIIIKGDAGPPGIPGQPGLKG 1391
Score = 67.0 bits (162), Expect = 2e-11
Identities = 78/265 (29%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 98 PSPV----LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 153
P PV + + N G PG P P G P + G P P G G+PG P
Sbjct: 628 PGPVGEKGIQGVAGNPGQPGIPGPKG--DPGQTITQPGKPGLPGNPGRDGDVGLPG-DPG 684
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMG-PMGPGPQNYGSGMRPPPNSLG-PAMPGIN 211
LP Q G P + GS P G+G P PGP+ + G+ PP + G P G+
Sbjct: 685 LPG------QPGLPGIPGSKGEPGIP-GIGLPGPPGPKGF-PGIPGPPGAPGTPGRIGLE 736
Query: 212 MGPGA-GRPWPNPNSANSIPYSSSSPGT--------------YVGPPGGGGPPGTPIMPS 256
PG G P P ++P PG + GPPG G G +P
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPG 796
Query: 257 PADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
P + M P PG P PG GP+G G H + G G GL
Sbjct: 797 PKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPG---LHGIPGEKGDPGPPGL 853
Query: 317 PKNSPNNISGISNPPGTPRDDGELG 341
P G PG P G G
Sbjct: 854 DVPGPPGERGSPGIPGAPGPIGPPG 878
Score = 65.9 bits (159), Expect = 6e-11
Identities = 74/251 (29%), Positives = 87/251 (34%), Gaps = 49/251 (19%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAG--GPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
G PG P P G P G GP P +G++ G PG P +P P QG P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGL-PGIPGVSGPKGYQGLP 987
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSAN 227
G P GP PGP+ G+ P +GP PG+ G +P P
Sbjct: 988 GDPGQPGLSGQPGLPGP--PGPKG-NPGLPGQPGLIGP--PGLK-GTIGDMGFPGPQGVE 1041
Query: 228 SIPYSSSSPGTYVGPPGGGGPPGTPIMPS-PADSTNSSDNIYTMINPVPPGGSRSNFPMG 286
GPPG G PG P P P + D PG S P
Sbjct: 1042 -------------GPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGL 1078
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN----------------SPNNISGISNP 330
PG G G G + GS+G + GLP P GIS P
Sbjct: 1079 PGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP 1138
Query: 331 PGTPRDDGELG 341
PG P GE G
Sbjct: 1139 PGNPGLPGEPG 1149
Score = 65.9 bits (159), Expect = 6e-11
Identities = 84/270 (31%), Positives = 104/270 (38%), Gaps = 58/270 (21%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQ-PFMS--PRYAGGPRPPIR--MGNQPPGGVPGTQPLLPN 156
L IP N G+PG PGF P + P G P P + GN P G PG +P
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPG-RPGFQG 1267
Query: 157 SMDPTRQQGHPNMGG-SMQRMNP--------PRGMGPMGPGPQNYGSGMRPPPNSL--GP 205
P G P GG ++ NP P G GP P G+ RP N + P
Sbjct: 1268 LPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGP-PGLQGNPGRPGLNGMKGDP 1326
Query: 206 AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSD 265
+PG+ PG P P SA G PG GPPG P +P P S
Sbjct: 1327 GLPGVPGFPGMKGPSGVPGSAGP-----------EGEPGLIGPPGPPGLPGP-----SGQ 1370
Query: 266 NIYTMINPVPPG-----GSRS----NFPMG-PGSDGPMG-----------GMGGME-PHH 303
+I + PPG G + P G PG GP G G GG +
Sbjct: 1371 SIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPG 1430
Query: 304 MNGSLGSGDIDGLPKNSPNNISGISNPPGT 333
+ G G+ +DG P P+ + G PPGT
Sbjct: 1431 LPGQPGTRGLDGPP--GPDGLQGPPGPPGT 1458
Score = 65.5 bits (158), Expect = 7e-11
Identities = 84/312 (26%), Positives = 97/312 (31%), Gaps = 71/312 (22%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRY------AGGPRPPIRMGNQPP 144
D P P+ P G+ G P PPG P P G P PP PP
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP 859
Query: 145 G-----GVPGTQ-----PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------- 186
G G+PG P P G P G M M PP GP+G
Sbjct: 860 GERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 187 --------------PGPQNYGSGMRPP----------PNSLG-------PAMPGINMGPG 215
PGP P PN LG P +PGI PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI---PG 976
Query: 216 AGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 270
P +P PG GPPG G PG P P I M
Sbjct: 977 VS----GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDM 1032
Query: 271 INPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 329
P P G P G PG G G+ G + + + S + GLP P G+
Sbjct: 1033 GFPGPQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLPGLP--GPKGEPGLPG 1089
Query: 330 PPGTPRDDGELG 341
PG P G +G
Sbjct: 1090 YPGNPGIKGSVG 1101
Score = 60.1 bits (144), Expect = 3e-09
Identities = 80/289 (27%), Positives = 101/289 (34%), Gaps = 56/289 (19%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQ---PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
S ++ ++P G PG P PPG P P G P PP MG P G+PG + +
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG 219
Query: 156 -NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------PGPQNYGSGMRPPPNSLG-PA 206
N P ++G + G PP GP G P + G + P G P
Sbjct: 220 LNFQGPKGEKGEQGLQG------PP---GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG 270
Query: 207 MPGINMGPG-----------------AGRPWPN-PNSANSIPYSSSSPGTYVGPP----- 243
PGI PG G+P + N IP PG Y G P
Sbjct: 271 PPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPG-YPGEPGRDGE 329
Query: 244 ----GGGGPPGTP--IMPSPADSTNSSDNIYTMINPVPPGGSRSNFP---MGPGSDGPMG 294
G GPPG P ++P P + + +P FP PG GP G
Sbjct: 330 KGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPG 389
Query: 295 G--MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
MG P G G +G P S G+ PG P G G
Sbjct: 390 AAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG 438
Score = 56.2 bits (134), Expect = 4e-08
Identities = 58/193 (30%), Positives = 68/193 (35%), Gaps = 38/193 (19%)
Query: 164 QGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG----PAMPGINMGPGA--- 216
+GHP + G P GP GP Q G+ PP G P +PG PG
Sbjct: 56 EGHPGLPGF------PGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGM 109
Query: 217 ----GRPWPNP-NSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 271
G P P N PG+ G PG GPPG P +P S I
Sbjct: 110 PGHDGAPGPQGIPGCNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGS---IIMSS 165
Query: 272 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPP 331
P P G PG GP G G P + G +G P + G PP
Sbjct: 166 LPGPKG--------NPGYPGPPGIQGLPGPTGIPGPIG--------PPGPPGLMGPPGPP 209
Query: 332 GTPRDDGELGGNF 344
G P G +G NF
Sbjct: 210 GLPGPKGNMGLNF 222
Score = 51.6 bits (122), Expect = 1e-06
Identities = 66/261 (25%), Positives = 81/261 (31%), Gaps = 48/261 (18%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQP----FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
P L P G+PG P P G P P G P P G Q GV G +
Sbjct: 422 PGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTC 481
Query: 156 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
+ T G P G PP +G G + +G P P +PG PG
Sbjct: 482 FNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGL--PGIPGAPGAPG 539
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 275
P + P G +G PG G PG P T D +
Sbjct: 540 FPGSKGEPGDILTFPGMKGDKGE-LGSPGAPGLPGLP-------GTPGQDGL-------- 583
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN---------------S 320
PG GP G GG+ G G+ + GLP N
Sbjct: 584 -----------PGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVG 632
Query: 321 PNNISGISNPPGTPRDDGELG 341
I G++ PG P G G
Sbjct: 633 EKGIQGVAGNPGQPGIPGPKG 653
Score = 51.2 bits (121), Expect = 1e-06
Identities = 75/267 (28%), Positives = 87/267 (32%), Gaps = 39/267 (14%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRM----GNQPPGGVPGTQ--PLLPNS-----M 158
G G P PPG P G + I + G + G PG Q P LP M
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 159 DPTRQQGHPNMGGSMQRMNPPRGM---GPMGPGPQNYGSGMRPPPNSLGPAMPGIN--MG 213
P G P G PP G+ GP G Q G+ PP GP +P +
Sbjct: 394 GPPGPPGFPGERGQKGDEGPP-GISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452
Query: 214 PGAGRPWPNPNSA-----------------NSIPYSSSSPGTYVGPPGGGGPPGTPIMPS 256
PG P +P N I S P G PG GPPG+ P
Sbjct: 453 PGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPG 512
Query: 257 PADSTNSSDNIYTMINPVPPGG-SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDG 315
+ P PG FP G G + GM+ G LGS G
Sbjct: 513 QKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD--KGELGSPGAPG 570
Query: 316 LPKNSPNNISGISNPPGTPRDDGELGG 342
LP G PG P GE GG
Sbjct: 571 LP--GLPGTPGQDGLPGLPGPKGEPGG 595
Score = 45.8 bits (107), Expect = 6e-05
Identities = 51/188 (27%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP---LLPN 156
P L + + G+PG P PG P P AG P +G P G+PG ++
Sbjct: 1317 PGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKG 1376
Query: 157 SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA 216
P G P + G P GP GP P PG N PG
Sbjct: 1377 DAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP-----------------PGDPGRNGLPG- 1418
Query: 217 GRPWPNPNSANSIPYSSSSPGTY-----VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 271
+ P PGT GP G GPPG P S A + + T
Sbjct: 1419 ---FDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTD 1475
Query: 272 NPVPPGGS 279
P P G+
Sbjct: 1476 APQCPQGT 1483
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 241 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRS-----NFPMGPGSDGPM 293
G PG G PG P P P P PPG G R FP PG G
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Query: 294 GGMGGMEPHHMNGSLGSGDIDGLPKNSPN--NISGISNPPGTPRDDGELGGNFLHSFQND 351
G G P + G G+ G P SP + G PPG P GE G + S
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERGFP-GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGP 169
Query: 352 NYSP 355
+P
Sbjct: 170 KGNP 173
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 79.3 bits (194), Expect = 5e-15
Identities = 76/240 (31%), Positives = 90/240 (37%), Gaps = 26/240 (10%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PG P + G P PP G P G PG LP P GHP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPG----LPGEPGPVGGGGHPGQ 1159
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P G GP Q G N P +PG++ G G P +
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG-GLPGIPGNPGL 1218
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG--- 286
P PG + G PG GPPG P P PA NP P G P G
Sbjct: 1219 PGPKGEPG-FHGFPGVQGPPGPPGSPGPALEGPKG-------NPGPQGPPGRPGPTGFQG 1270
Query: 287 -PGSDGPMG--GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGN 343
PG +GP G G GG++ G+ G + GLP + G PPG + G G N
Sbjct: 1271 LPGPEGPPGLPGNGGIKGE--KGNPGQPGLPGLP-----GLKGDQGPPGLQGNPGRPGLN 1323
Score = 69.7 bits (169), Expect = 4e-12
Identities = 73/241 (30%), Positives = 96/241 (39%), Gaps = 37/241 (15%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
+DG+PG P P G P P + G P P G+ G PG Q +P ++G P
Sbjct: 79 DDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHD---GAPGPQG-IPGCNGTKGERGFP 134
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNS-LGPAMPGINMGPGAGRPWPNPNSA 226
G PP GP G GM+ P S + ++PG PG +P P
Sbjct: 135 GSPGFPGLQGPP---GPPGI------PGMKGEPGSIIMSSLPGPKGNPG----YPGPPGI 181
Query: 227 NSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 284
+P + PG GPPG GPPG P +P P + +N P G +
Sbjct: 182 QGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG--------LNFQGPKGEKGE-- 231
Query: 285 MGPGSDGPMGGMGGM--EPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTP-RDDGEL 340
G GP G G + + ++ GD GLP P GI PPG P + GE
Sbjct: 232 --QGLQGPPGPPGQISEQKRPIDVEFQKGD-QGLPGDRGPPGPPGIRGPPGPPGGEKGEK 288
Query: 341 G 341
G
Sbjct: 289 G 289
Score = 68.9 bits (167), Expect = 7e-12
Identities = 90/306 (29%), Positives = 108/306 (35%), Gaps = 65/306 (21%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPG-----FFQPFMSPRYAGGPRPPIRMGNQPPGGV 147
S A P L P DG+PG P P G F+ P G P P GN P G
Sbjct: 565 SPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGP--PGNPGLPGLPGNIGPMGP 622
Query: 148 PGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-----PG----PQNYGS---- 194
PG P P ++G + G+ + P G G PG P N G
Sbjct: 623 PGFGP-----PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 195 GMRPPPNSLG-PAMPGINMG------PGAGRPW-PNPNSANSIPYSSSSPGTYVGPPGGG 246
G+ P G P +PGI PG G P P P IP +PGT G G
Sbjct: 678 GLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGT-PGRIGLE 736
Query: 247 GPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----------GSRSNFPMGPGS------ 289
GPPG P P P P PPG G R FP PG
Sbjct: 737 GPPGPPGFPGP----KGEPGFALPGPPGPPGLPGFKGALGPKGDR-GFPGPPGPPGRTGL 791
Query: 290 DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQ 349
DG G G + P+ G +G + G+ G+ PPG P G +G LH
Sbjct: 792 DGLPGPKGDVGPNGQPGPMGPPGLPGI---------GVQGPPGPPGIPGPIGQPGLHGIP 842
Query: 350 NDNYSP 355
+ P
Sbjct: 843 GEKGDP 848
Score = 68.2 bits (165), Expect = 1e-11
Identities = 80/279 (28%), Positives = 99/279 (35%), Gaps = 46/279 (16%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTR 162
+P G PG P P G P +P G P P G+ G PG +P P
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAG 1179
Query: 163 QQGHPNMGG-------SMQRMNPPRGMG--------PMGPGPQN----YG----SGMRPP 199
Q+G P G + ++ +G G P PGP+ +G G P
Sbjct: 1180 QKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1239
Query: 200 PNSLGPAMPGINMGPGAGRP--WPNPNSANSIPYSSSSPGTYVGPPGGG------GPPGT 251
P S GPA+ G PG P P P +P PG PG G G PG
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGL----PGNGGIKGEKGNPGQ 1295
Query: 252 PIMPSPADSTNSSDNIYTMINPVPPG--GSRSN-----FPMGPGSDGPMGGMGGMEPHHM 304
P +P NP PG G + + P PG GP G G P
Sbjct: 1296 PGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1355
Query: 305 NGSLGSGDIDGLPKNSPNN--ISGISNPPGTPRDDGELG 341
G +G GLP S + I G + PPG P G G
Sbjct: 1356 PGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1394
Score = 67.0 bits (162), Expect = 2e-11
Identities = 78/265 (29%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 98 PSPV----LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 153
P PV + + N G PG P P G P + G P P G G+PG P
Sbjct: 628 PGPVGEKGIQGVAGNPGQPGIPGPKG--DPGQTITQPGKPGLPGNPGRDGDVGLPG-DPG 684
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMG-PMGPGPQNYGSGMRPPPNSLG-PAMPGIN 211
LP Q G P + GS P G+G P PGP+ + G+ PP + G P G+
Sbjct: 685 LPG------QPGLPGIPGSKGEPGIP-GIGLPGPPGPKGF-PGIPGPPGAPGTPGRIGLE 736
Query: 212 MGPGA-GRPWPNPNSANSIPYSSSSPGT--------------YVGPPGGGGPPGTPIMPS 256
PG G P P ++P PG + GPPG G G +P
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPG 796
Query: 257 PADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
P + M P PG P PG GP+G G H + G G GL
Sbjct: 797 PKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPG---LHGIPGEKGDPGPPGL 853
Query: 317 PKNSPNNISGISNPPGTPRDDGELG 341
P G PG P G G
Sbjct: 854 DVPGPPGERGSPGIPGAPGPIGPPG 878
Score = 65.9 bits (159), Expect = 6e-11
Identities = 74/251 (29%), Positives = 87/251 (34%), Gaps = 49/251 (19%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAG--GPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
G PG P P G P G GP P +G++ G PG P +P P QG P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGL-PGIPGVSGPKGYQGLP 987
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSAN 227
G P GP PGP+ G+ P +GP PG+ G +P P
Sbjct: 988 GDPGQPGLSGQPGLPGP--PGPKG-NPGLPGQPGLIGP--PGLK-GTIGDMGFPGPQGVE 1041
Query: 228 SIPYSSSSPGTYVGPPGGGGPPGTPIMPS-PADSTNSSDNIYTMINPVPPGGSRSNFPMG 286
GPPG G PG P P P + D PG S P
Sbjct: 1042 -------------GPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGL 1078
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN----------------SPNNISGISNP 330
PG G G G + GS+G + GLP P GIS P
Sbjct: 1079 PGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP 1138
Query: 331 PGTPRDDGELG 341
PG P GE G
Sbjct: 1139 PGNPGLPGEPG 1149
Score = 65.5 bits (158), Expect = 7e-11
Identities = 84/312 (26%), Positives = 97/312 (31%), Gaps = 71/312 (22%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRY------AGGPRPPIRMGNQPP 144
D P P+ P G+ G P PPG P P G P PP PP
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP 859
Query: 145 G-----GVPGTQ-----PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------- 186
G G+PG P P G P G M M PP GP+G
Sbjct: 860 GERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 187 --------------PGPQNYGSGMRPP----------PNSLG-------PAMPGINMGPG 215
PGP P PN LG P +PGI PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI---PG 976
Query: 216 AGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 270
P +P PG GPPG G PG P P I M
Sbjct: 977 VS----GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDM 1032
Query: 271 INPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 329
P P G P G PG G G+ G + + + S + GLP P G+
Sbjct: 1033 GFPGPQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLPGLP--GPKGEPGLPG 1089
Query: 330 PPGTPRDDGELG 341
PG P G +G
Sbjct: 1090 YPGNPGIKGSVG 1101
Score = 65.1 bits (157), Expect = 9e-11
Identities = 86/276 (31%), Positives = 104/276 (37%), Gaps = 67/276 (24%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGN--QPPGGVPGTQPLLPNSMD 159
L IP N G+PG PGF P G P PP G + P G PG Q P
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHG---FPGVQGPPGPPGSPGPALEGPKGNPGPQG-PPGRPG 1264
Query: 160 PTRQQGHP----------NMGGSMQRMNP--------PRGMGPMGPGPQNYGSGMRPPPN 201
PT QG P N G ++ NP P G GP P G+ RP N
Sbjct: 1265 PTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGP-PGLQGNPGRPGLN 1323
Query: 202 SL--GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 259
+ P +PG+ PG P P SA G PG GPPG P +P P
Sbjct: 1324 GMKGDPGLPGVPGFPGMKGPSGVPGSAGP-----------EGEPGLIGPPGPPGLPGP-- 1370
Query: 260 STNSSDNIYTMINPVPPG-----GSRS----NFPMG-PGSDGPMG-----------GMGG 298
S +I + PPG G + P G PG GP G G GG
Sbjct: 1371 ---SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGG 1427
Query: 299 ME-PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 333
+ + G G+ +DG P P+ + G PPGT
Sbjct: 1428 RKGDPGLPGQPGTRGLDGPP--GPDGLQGPPGPPGT 1461
Score = 60.1 bits (144), Expect = 3e-09
Identities = 80/289 (27%), Positives = 101/289 (34%), Gaps = 56/289 (19%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQ---PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
S ++ ++P G PG P PPG P P G P PP MG P G+PG + +
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG 219
Query: 156 -NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------PGPQNYGSGMRPPPNSLG-PA 206
N P ++G + G PP GP G P + G + P G P
Sbjct: 220 LNFQGPKGEKGEQGLQG------PP---GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG 270
Query: 207 MPGINMGPG-----------------AGRPWPN-PNSANSIPYSSSSPGTYVGPP----- 243
PGI PG G+P + N IP PG Y G P
Sbjct: 271 PPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPG-YPGEPGRDGE 329
Query: 244 ----GGGGPPGTP--IMPSPADSTNSSDNIYTMINPVPPGGSRSNFP---MGPGSDGPMG 294
G GPPG P ++P P + + +P FP PG GP G
Sbjct: 330 KGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPG 389
Query: 295 G--MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
MG P G G +G P S G+ PG P G G
Sbjct: 390 AAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG 438
Score = 56.2 bits (134), Expect = 4e-08
Identities = 58/193 (30%), Positives = 68/193 (35%), Gaps = 38/193 (19%)
Query: 164 QGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG----PAMPGINMGPGA--- 216
+GHP + G P GP GP Q G+ PP G P +PG PG
Sbjct: 56 EGHPGLPGF------PGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGM 109
Query: 217 ----GRPWPNP-NSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 271
G P P N PG+ G PG GPPG P +P S I
Sbjct: 110 PGHDGAPGPQGIPGCNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGS---IIMSS 165
Query: 272 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPP 331
P P G PG GP G G P + G +G P + G PP
Sbjct: 166 LPGPKG--------NPGYPGPPGIQGLPGPTGIPGPIG--------PPGPPGLMGPPGPP 209
Query: 332 GTPRDDGELGGNF 344
G P G +G NF
Sbjct: 210 GLPGPKGNMGLNF 222
Score = 51.6 bits (122), Expect = 1e-06
Identities = 66/261 (25%), Positives = 81/261 (31%), Gaps = 48/261 (18%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQP----FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
P L P G+PG P P G P P G P P G Q GV G +
Sbjct: 422 PGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTC 481
Query: 156 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
+ T G P G PP +G G + +G P P +PG PG
Sbjct: 482 FNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGL--PGIPGAPGAPG 539
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 275
P + P G +G PG G PG P T D +
Sbjct: 540 FPGSKGEPGDILTFPGMKGDKGE-LGSPGAPGLPGLP-------GTPGQDGL-------- 583
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN---------------S 320
PG GP G GG+ G G+ + GLP N
Sbjct: 584 -----------PGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVG 632
Query: 321 PNNISGISNPPGTPRDDGELG 341
I G++ PG P G G
Sbjct: 633 EKGIQGVAGNPGQPGIPGPKG 653
Score = 51.2 bits (121), Expect = 1e-06
Identities = 75/267 (28%), Positives = 87/267 (32%), Gaps = 39/267 (14%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRM----GNQPPGGVPGTQ--PLLPNS-----M 158
G G P PPG P G + I + G + G PG Q P LP M
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 159 DPTRQQGHPNMGGSMQRMNPPRGM---GPMGPGPQNYGSGMRPPPNSLGPAMPGIN--MG 213
P G P G PP G+ GP G Q G+ PP GP +P +
Sbjct: 394 GPPGPPGFPGERGQKGDEGPP-GISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452
Query: 214 PGAGRPWPNPNSA-----------------NSIPYSSSSPGTYVGPPGGGGPPGTPIMPS 256
PG P +P N I S P G PG GPPG+ P
Sbjct: 453 PGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPG 512
Query: 257 PADSTNSSDNIYTMINPVPPGG-SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDG 315
+ P PG FP G G + GM+ G LGS G
Sbjct: 513 QKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD--KGELGSPGAPG 570
Query: 316 LPKNSPNNISGISNPPGTPRDDGELGG 342
LP G PG P GE GG
Sbjct: 571 LP--GLPGTPGQDGLPGLPGPKGEPGG 595
Score = 45.8 bits (107), Expect = 6e-05
Identities = 51/188 (27%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP---LLPN 156
P L + + G+PG P PG P P AG P +G P G+PG ++
Sbjct: 1320 PGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKG 1379
Query: 157 SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA 216
P G P + G P GP GP P PG N PG
Sbjct: 1380 DAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP-----------------PGDPGRNGLPG- 1421
Query: 217 GRPWPNPNSANSIPYSSSSPGTY-----VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 271
+ P PGT GP G GPPG P S A + + T
Sbjct: 1422 ---FDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTD 1478
Query: 272 NPVPPGGS 279
P P G+
Sbjct: 1479 APQCPQGT 1486
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 241 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRS-----NFPMGPGSDGPM 293
G PG G PG P P P P PPG G R FP PG G
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Query: 294 GGMGGMEPHHMNGSLGSGDIDGLPKNSPN--NISGISNPPGTPRDDGELGGNFLHSFQND 351
G G P + G G+ G P SP + G PPG P GE G + S
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERGFP-GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGP 169
Query: 352 NYSP 355
+P
Sbjct: 170 KGNP 173
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 79.0 bits (193), Expect = 6e-15
Identities = 65/199 (32%), Positives = 74/199 (37%), Gaps = 31/199 (15%)
Query: 98 PSPVLGNI----PPNDGMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVPGTQP 152
P P GN PP G P GP P G Q P G P PP + GNQ G P
Sbjct: 123 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP---- 178
Query: 153 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINM 212
P + +G P GG+ + PPR P GP PQ PPP P P
Sbjct: 179 ------HPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQG 232
Query: 213 G-------PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSD 265
G P G+P P + P PG GPP GG P P +P PA
Sbjct: 233 GNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQP-LPPPAGKPQGP- 290
Query: 266 NIYTMINPVPPGGSRSNFP 284
P PP G R + P
Sbjct: 291 -------PPPPQGGRPHRP 302
Score = 76.3 bits (186), Expect = 4e-14
Identities = 77/253 (30%), Positives = 89/253 (35%), Gaps = 43/253 (16%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
PP G P G P G Q P G P PP + GNQ G P P + +
Sbjct: 51 PPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR----------PGKPE 100
Query: 165 GHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP---NSLGPAMPGINMG----PGAG 217
G P GG+ + PPR P GP PQ PPP GP G N P G
Sbjct: 101 GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 160
Query: 218 RP-WPNPNSANSIPYSSSSPGTYVGPP--GGGGPPGTPIMPSPADSTNSSDNIYTMINPV 274
+P P P N PG GPP GG G P P + P
Sbjct: 161 KPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPE------------GPP 208
Query: 275 PPGGSRSNF-PMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP---NNISGISNP 330
P GG++S P PG GG +P G G P+ P N P
Sbjct: 209 PQGGNQSQGPPPRPGKPEGPPSQGGNKPQ------GPPPHPGKPQGPPPQEGNKPQRPPP 262
Query: 331 PGTPRDDGELGGN 343
PG P+ GGN
Sbjct: 263 PGRPQGPPPPGGN 275
Score = 68.9 bits (167), Expect = 7e-12
Identities = 57/171 (33%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 98 PSPVLGNI----PPNDGMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVP---- 148
P P GN PP G P GP P G Q P + G P PP + GNQ G P
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGK 203
Query: 149 --GTQPLLPNSMD-----PTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPN 201
G P N P + +G P+ GG+ + PP P GP PQ RPPP
Sbjct: 204 PEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPP- 262
Query: 202 SLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 252
PG GP P P N +P + P PP GG P P
Sbjct: 263 ------PGRPQGP----PPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPP 303
Score = 55.5 bits (132), Expect = 7e-08
Identities = 44/125 (35%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 98 PSPVLGNI----PPNDGMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVP---- 148
P P GN PP G P GP P G Q P G P PP + GN+P G P
Sbjct: 186 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGK 245
Query: 149 --------GTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 200
G +P P P R QG P GG+ Q+ PP P GP P G PP
Sbjct: 246 PQGPPPQEGNKPQRPPP--PGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPP 303
Query: 201 NSLGP 205
P
Sbjct: 304 QGQPP 308
Score = 52.8 bits (125), Expect = 5e-07
Identities = 53/198 (26%), Positives = 63/198 (31%), Gaps = 35/198 (17%)
Query: 162 RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWP 221
+ +G GG+ + PP P G PQ PPP P P G + P P
Sbjct: 35 KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 94
Query: 222 NPNSANSIPYSSSS--------PGTYVGPP--GGGGPPGTPIMPSPADSTNSSDNIYTMI 271
P P + PG GPP GG G P P +
Sbjct: 95 RPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE------------ 142
Query: 272 NPVPPGGSRSNFPM----GPGSDGPMGG--MGGMEPHHMNGSLGSGDIDGLPKNSPNNIS 325
P P GG++S P P P GG G PH G +G P N
Sbjct: 143 GPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPH-------PGKPEGPPPQGGNQSQ 195
Query: 326 GISNPPGTPRDDGELGGN 343
G PG P GGN
Sbjct: 196 GPPPRPGKPEGPPPQGGN 213
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 77.4 bits (189), Expect = 2e-14
Identities = 75/242 (30%), Positives = 83/242 (34%), Gaps = 29/242 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQGHP 167
G G P PPG P +P AGG P G Q G G + P P QG P
Sbjct: 1156 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1215
Query: 168 NM------GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPG-AGRP 219
G + M PP GP GP N G + PP S+G G PG AG P
Sbjct: 1216 GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1275
Query: 220 WPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGS 279
P + P GPPG GPPG P NP P G
Sbjct: 1276 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG---------NPGPVG-- 1324
Query: 280 RSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGE 339
PG GP G G + G G G P P SG + PPG P G
Sbjct: 1325 ------FPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQP--GPPGPSGEAGPPGPPGKRGP 1376
Query: 340 LG 341
G
Sbjct: 1377 PG 1378
Score = 69.3 bits (168), Expect = 5e-12
Identities = 71/238 (29%), Positives = 87/238 (36%), Gaps = 33/238 (13%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG PPG +P G P R G Q P G+PG P G P
Sbjct: 1087 GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG----------PAGPAGSPGE 1136
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPGAGRPWPNPNSANS 228
G + P G G +N G PP GP PGI G G P P
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGEN---GPPGPPGLQGPVGAPGIAGGDGE----PGPRGQQG 1189
Query: 229 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP- 287
+ G G PG GP G +P P + ++ M P PPG P GP
Sbjct: 1190 MFGQKGDEGAR-GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPG---PRGPQGPN 1245
Query: 288 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNS----PNNISGISNPPGTPRDDGELG 341
G+DGP G G + GS+G G P + P +G+ P G + GE G
Sbjct: 1246 GADGPQGPPGSV------GSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1297
Score = 67.0 bits (162), Expect = 2e-11
Identities = 73/262 (27%), Positives = 91/262 (34%), Gaps = 33/262 (12%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P G PG PPG P +P G P P G P G G DP Q G
Sbjct: 1299 PGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP-GQPG 1357
Query: 166 HPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNS--LGPAMPGINMG 213
P G PP GP G G + PP + +GP P G
Sbjct: 1358 PPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1417
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMI 271
P R P P +P ++ GPPG GPPG P + S + + +I
Sbjct: 1418 PEGLRGIPGPVGEQGLPGAAGQD----GPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLI 1473
Query: 272 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP--------KNS--- 320
P G + + + PG+ G G G G LG GLP K S
Sbjct: 1474 GPPGEQGEKGDRGL-PGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1532
Query: 321 --PNNISGISNPPGTPRDDGEL 340
SG+ PPG+P GE+
Sbjct: 1533 AGQKGDSGLPGPPGSPGPPGEV 1554
Score = 63.2 bits (152), Expect = 4e-10
Identities = 68/237 (28%), Positives = 84/237 (35%), Gaps = 28/237 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PG P S + G P G + G PG P Q+G
Sbjct: 850 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPG----------PRGQRGPTGP 899
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG-PGAGRPWPNPNSANS 228
GS P GP G G G PP GP P +G PG P P P +
Sbjct: 900 RGSRGARGPTGKPGPKGTSG---GDGPPGPPGERGPQGPQGPVGFPGPKGP-PGPPGKDG 955
Query: 229 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-- 286
+P G G G GPPG + P T + I +P PPG P G
Sbjct: 956 LPGHPGQRGE-TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG------PPGEQ 1008
Query: 287 --PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
PG+ G G G P ++G G + G P + G PG +G G
Sbjct: 1009 GLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP--GERGLPGAQGAPGLKGGEGPQG 1063
Score = 55.5 bits (132), Expect = 7e-08
Identities = 80/279 (28%), Positives = 90/279 (32%), Gaps = 67/279 (24%)
Query: 106 PPNDGMPGGPI-PPGFFQPFMSPRYAGGPRPPIRMGNQPPG-----GVPGTQPLLP---- 155
PP P G + PPG P P G PP R G PG G PGT +LP
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG--LPGADGLPGPPGTMLMLPFRYG 512
Query: 156 --NSMDPT-----------------RQQGHPNMGGSMQRMNPPRGMGPMG-------PGP 189
S PT +G P G R P G G G PGP
Sbjct: 513 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGP 572
Query: 190 QNYGSGMRPPPNSLGPAMPGINMGPGA--GRPWPNPNSANSIPYSSSSPGT-----YVGP 242
Q G++ PP G PG PGA GR P A PG + G
Sbjct: 573 QG-PRGVQGPPGPTG--KPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 629
Query: 243 PGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPH 302
G GPPG P D + + P G PG GP G +G
Sbjct: 630 RGPQGPPGPP----------GDDGMRGEDGEIGPRGL-------PGEAGPRGLLGPRGTP 672
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G +DG P P G PG P G G
Sbjct: 673 GAPGQPGMAGVDGPP--GPKGNMGPQGEPGPPGQQGNPG 709
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/264 (28%), Positives = 95/264 (35%), Gaps = 50/264 (18%)
Query: 109 DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPN 168
+G PG P G P P G PP G++ P G PG LP + G P
Sbjct: 453 EGPPGPAGPAGIMGP---PGLQGPTGPPGDPGDRGPPGRPG----LPGA------DGLPG 499
Query: 169 MGGSMQRMNPPRGMGPMGPGP-------------QNYGSGMRPPPNSLG-PAMPGINMGP 214
G+M M P R G GP Q +R PP +G PG GP
Sbjct: 500 PPGTM-LMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 558
Query: 215 G-------AGRPWP-NPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
G +G P P P P + PG G PG G G P P A D
Sbjct: 559 GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR-GRPGADGGRGMPGEPG-AKGDRGFDG 616
Query: 267 IYTMINPVPPGGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 322
+ + P G P G PG DG G G + P + G G + G P+ +P
Sbjct: 617 LPGL--PGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLG-PRGTPG 673
Query: 323 -----NISGISNPPGTPRDDGELG 341
++G+ PPG + G G
Sbjct: 674 APGQPGMAGVDGPPGPKGNMGPQG 697
Score = 53.9 bits (128), Expect = 2e-07
Identities = 70/237 (29%), Positives = 82/237 (34%), Gaps = 28/237 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
GMPG P G P G G Q P G PG + + +G P
Sbjct: 601 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGE-IGPRGLPGE 659
Query: 170 GGSMQRMNPPRGM-GPMG-PG-PQNYG-SGMRPPPNSLGPAMPGINMGPGAGRPWPNPNS 225
G PRG+ GP G PG P G +G+ PP G NMGP G P P
Sbjct: 660 AG-------PRGLLGPRGTPGAPGQPGMAGVDGPPGPKG------NMGP-QGEPGPPGQQ 705
Query: 226 ANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPM 285
N P P +GPPG GP G P + + + G P
Sbjct: 706 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 765
Query: 286 GP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
GP G GP G G + GS G DG P G G D GE+G
Sbjct: 766 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP--------GFKGDMGLKGDRGEVG 814
Score = 52.4 bits (124), Expect = 6e-07
Identities = 52/169 (30%), Positives = 65/169 (38%), Gaps = 28/169 (16%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P +G+ G P P G P AG PP MG P G+PG L ++G
Sbjct: 1416 PGPEGLRGIPGPVG---EQGLPGAAGQDGPPGPMG---PPGLPG----LKGDPGSKGEKG 1465
Query: 166 HPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
HP + G + PP G G PG + G G+ P LGP P GP
Sbjct: 1466 HPGLIGLI---GPPGEQGEKGDRGLPGTQGSPGAKGDG-GIPGPAGPLGPPGPPGLPGPQ 1521
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 264
P N ++ P GPPG GPPG I P P S+ +
Sbjct: 1522 G----PKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKT 1566
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/214 (27%), Positives = 69/214 (32%), Gaps = 55/214 (25%)
Query: 146 GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP 205
GVP + S++ GH G Q+ P + PG G PP GP
Sbjct: 416 GVPAETDITETSIN-----GHGAYGEKGQKGEP----AVVEPGMLVEG-----PPGPAGP 461
Query: 206 AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSD 265
A GI PG P P G PG GPPG P +P AD
Sbjct: 462 A--GIMGPPGLQGPTGPP-----------------GDPGDRGPPGRPGLPG-ADGLPGPP 501
Query: 266 NIYTMINPVPPGGSRSNFPMGP------------------GSDGPMGGMGGMEPHHMNGS 307
M+ P GG S P G GPMG G P GS
Sbjct: 502 GTMLML-PFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS 560
Query: 308 LGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G+ G P P G+ PPG G+ G
Sbjct: 561 SGAKGESGDP--GPQGPRGVQGPPGPTGKPGKRG 592
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 77.4 bits (189), Expect = 2e-14
Identities = 75/242 (30%), Positives = 83/242 (34%), Gaps = 29/242 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQGHP 167
G G P PPG P +P AGG P G Q G G + P P QG P
Sbjct: 1105 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1164
Query: 168 NM------GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPG-AGRP 219
G + M PP GP GP N G + PP S+G G PG AG P
Sbjct: 1165 GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1224
Query: 220 WPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGS 279
P + P GPPG GPPG P NP P G
Sbjct: 1225 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG---------NPGPVG-- 1273
Query: 280 RSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGE 339
PG GP G G + G G G P P SG + PPG P G
Sbjct: 1274 ------FPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQP--GPPGPSGEAGPPGPPGKRGP 1325
Query: 340 LG 341
G
Sbjct: 1326 PG 1327
Score = 69.3 bits (168), Expect = 5e-12
Identities = 71/238 (29%), Positives = 87/238 (36%), Gaps = 33/238 (13%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG PPG +P G P R G Q P G+PG P G P
Sbjct: 1036 GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG----------PAGPAGSPGE 1085
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPGAGRPWPNPNSANS 228
G + P G G +N G PP GP PGI G G P P
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGEN---GPPGPPGLQGPVGAPGIAGGDGE----PGPRGQQG 1138
Query: 229 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP- 287
+ G G PG GP G +P P + ++ M P PPG P GP
Sbjct: 1139 MFGQKGDEGAR-GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPG---PRGPQGPN 1194
Query: 288 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNS----PNNISGISNPPGTPRDDGELG 341
G+DGP G G + GS+G G P + P +G+ P G + GE G
Sbjct: 1195 GADGPQGPPGSV------GSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1246
Score = 67.0 bits (162), Expect = 2e-11
Identities = 73/262 (27%), Positives = 91/262 (34%), Gaps = 33/262 (12%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P G PG PPG P +P G P P G P G G DP Q G
Sbjct: 1248 PGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP-GQPG 1306
Query: 166 HPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNS--LGPAMPGINMG 213
P G PP GP G G + PP + +GP P G
Sbjct: 1307 PPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1366
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMI 271
P R P P +P ++ GPPG GPPG P + S + + +I
Sbjct: 1367 PEGLRGIPGPVGEQGLPGAAGQD----GPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLI 1422
Query: 272 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP--------KNS--- 320
P G + + + PG+ G G G G LG GLP K S
Sbjct: 1423 GPPGEQGEKGDRGL-PGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1481
Query: 321 --PNNISGISNPPGTPRDDGEL 340
SG+ PPG+P GE+
Sbjct: 1482 AGQKGDSGLPGPPGSPGPPGEV 1503
Score = 63.2 bits (152), Expect = 4e-10
Identities = 68/237 (28%), Positives = 84/237 (35%), Gaps = 28/237 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PG P S + G P G + G PG P Q+G
Sbjct: 799 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPG----------PRGQRGPTGP 848
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG-PGAGRPWPNPNSANS 228
GS P GP G G G PP GP P +G PG P P P +
Sbjct: 849 RGSRGARGPTGKPGPKGTSG---GDGPPGPPGERGPQGPQGPVGFPGPKGP-PGPPGKDG 904
Query: 229 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-- 286
+P G G G GPPG + P T + I +P PPG P G
Sbjct: 905 LPGHPGQRGE-TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG------PPGEQ 957
Query: 287 --PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
PG+ G G G P ++G G + G P + G PG +G G
Sbjct: 958 GLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP--GERGLPGAQGAPGLKGGEGPQG 1012
Score = 55.5 bits (132), Expect = 7e-08
Identities = 80/279 (28%), Positives = 90/279 (32%), Gaps = 67/279 (24%)
Query: 106 PPNDGMPGGPI-PPGFFQPFMSPRYAGGPRPPIRMGNQPPG-----GVPGTQPLLP---- 155
PP P G + PPG P P G PP R G PG G PGT +LP
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG--LPGADGLPGPPGTMLMLPFRYG 461
Query: 156 --NSMDPT-----------------RQQGHPNMGGSMQRMNPPRGMGPMG-------PGP 189
S PT +G P G R P G G G PGP
Sbjct: 462 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGP 521
Query: 190 QNYGSGMRPPPNSLGPAMPGINMGPGA--GRPWPNPNSANSIPYSSSSPGT-----YVGP 242
Q G++ PP G PG PGA GR P A PG + G
Sbjct: 522 QG-PRGVQGPPGPTG--KPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 578
Query: 243 PGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPH 302
G GPPG P D + + P G PG GP G +G
Sbjct: 579 RGPQGPPGPP----------GDDGMRGEDGEIGPRGL-------PGEAGPRGLLGPRGTP 621
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G +DG P P G PG P G G
Sbjct: 622 GAPGQPGMAGVDGPP--GPKGNMGPQGEPGPPGQQGNPG 658
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/264 (28%), Positives = 95/264 (35%), Gaps = 50/264 (18%)
Query: 109 DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPN 168
+G PG P G P P G PP G++ P G PG LP + G P
Sbjct: 402 EGPPGPAGPAGIMGP---PGLQGPTGPPGDPGDRGPPGRPG----LPGA------DGLPG 448
Query: 169 MGGSMQRMNPPRGMGPMGPGP-------------QNYGSGMRPPPNSLG-PAMPGINMGP 214
G+M M P R G GP Q +R PP +G PG GP
Sbjct: 449 PPGTM-LMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 507
Query: 215 G-------AGRPWP-NPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
G +G P P P P + PG G PG G G P P A D
Sbjct: 508 GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR-GRPGADGGRGMPGEPG-AKGDRGFDG 565
Query: 267 IYTMINPVPPGGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 322
+ + P G P G PG DG G G + P + G G + G P+ +P
Sbjct: 566 LPGL--PGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLG-PRGTPG 622
Query: 323 -----NISGISNPPGTPRDDGELG 341
++G+ PPG + G G
Sbjct: 623 APGQPGMAGVDGPPGPKGNMGPQG 646
Score = 53.9 bits (128), Expect = 2e-07
Identities = 70/237 (29%), Positives = 82/237 (34%), Gaps = 28/237 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
GMPG P G P G G Q P G PG + + +G P
Sbjct: 550 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGE-IGPRGLPGE 608
Query: 170 GGSMQRMNPPRGM-GPMG-PG-PQNYG-SGMRPPPNSLGPAMPGINMGPGAGRPWPNPNS 225
G PRG+ GP G PG P G +G+ PP G NMGP G P P
Sbjct: 609 AG-------PRGLLGPRGTPGAPGQPGMAGVDGPPGPKG------NMGP-QGEPGPPGQQ 654
Query: 226 ANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPM 285
N P P +GPPG GP G P + + + G P
Sbjct: 655 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 714
Query: 286 GP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
GP G GP G G + GS G DG P G G D GE+G
Sbjct: 715 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP--------GFKGDMGLKGDRGEVG 763
Score = 52.4 bits (124), Expect = 6e-07
Identities = 52/169 (30%), Positives = 65/169 (38%), Gaps = 28/169 (16%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P +G+ G P P G P AG PP MG P G+PG L ++G
Sbjct: 1365 PGPEGLRGIPGPVG---EQGLPGAAGQDGPPGPMG---PPGLPG----LKGDPGSKGEKG 1414
Query: 166 HPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
HP + G + PP G G PG + G G+ P LGP P GP
Sbjct: 1415 HPGLIGLI---GPPGEQGEKGDRGLPGTQGSPGAKGDG-GIPGPAGPLGPPGPPGLPGPQ 1470
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 264
P N ++ P GPPG GPPG I P P S+ +
Sbjct: 1471 G----PKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKT 1515
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/214 (27%), Positives = 69/214 (32%), Gaps = 55/214 (25%)
Query: 146 GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP 205
GVP + S++ GH G Q+ P + PG G PP GP
Sbjct: 365 GVPAETDITETSIN-----GHGAYGEKGQKGEP----AVVEPGMLVEG-----PPGPAGP 410
Query: 206 AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSD 265
A GI PG P P G PG GPPG P +P AD
Sbjct: 411 A--GIMGPPGLQGPTGPP-----------------GDPGDRGPPGRPGLPG-ADGLPGPP 450
Query: 266 NIYTMINPVPPGGSRSNFPMGP------------------GSDGPMGGMGGMEPHHMNGS 307
M+ P GG S P G GPMG G P GS
Sbjct: 451 GTMLML-PFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS 509
Query: 308 LGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G+ G P P G+ PPG G+ G
Sbjct: 510 SGAKGESGDP--GPQGPRGVQGPPGPTGKPGKRG 541
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 77.4 bits (189), Expect = 2e-14
Identities = 75/242 (30%), Positives = 83/242 (34%), Gaps = 29/242 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQGHP 167
G G P PPG P +P AGG P G Q G G + P P QG P
Sbjct: 1144 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1203
Query: 168 NM------GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPG-AGRP 219
G + M PP GP GP N G + PP S+G G PG AG P
Sbjct: 1204 GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1263
Query: 220 WPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGS 279
P + P GPPG GPPG P NP P G
Sbjct: 1264 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG---------NPGPVG-- 1312
Query: 280 RSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGE 339
PG GP G G + G G G P P SG + PPG P G
Sbjct: 1313 ------FPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQP--GPPGPSGEAGPPGPPGKRGP 1364
Query: 340 LG 341
G
Sbjct: 1365 PG 1366
Score = 69.3 bits (168), Expect = 5e-12
Identities = 71/238 (29%), Positives = 87/238 (36%), Gaps = 33/238 (13%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG PPG +P G P R G Q P G+PG P G P
Sbjct: 1075 GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG----------PAGPAGSPGE 1124
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPGAGRPWPNPNSANS 228
G + P G G +N G PP GP PGI G G P P
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGEN---GPPGPPGLQGPVGAPGIAGGDGE----PGPRGQQG 1177
Query: 229 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP- 287
+ G G PG GP G +P P + ++ M P PPG P GP
Sbjct: 1178 MFGQKGDEGAR-GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPG---PRGPQGPN 1233
Query: 288 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNS----PNNISGISNPPGTPRDDGELG 341
G+DGP G G + GS+G G P + P +G+ P G + GE G
Sbjct: 1234 GADGPQGPPGSV------GSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1285
Score = 67.0 bits (162), Expect = 2e-11
Identities = 73/262 (27%), Positives = 91/262 (34%), Gaps = 33/262 (12%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P G PG PPG P +P G P P G P G G DP Q G
Sbjct: 1287 PGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDP-GQPG 1345
Query: 166 HPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNS--LGPAMPGINMG 213
P G PP GP G G + PP + +GP P G
Sbjct: 1346 PPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPG 1405
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMI 271
P R P P +P ++ GPPG GPPG P + S + + +I
Sbjct: 1406 PEGLRGIPGPVGEQGLPGAAGQD----GPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLI 1461
Query: 272 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP--------KNS--- 320
P G + + + PG+ G G G G LG GLP K S
Sbjct: 1462 GPPGEQGEKGDRGL-PGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1520
Query: 321 --PNNISGISNPPGTPRDDGEL 340
SG+ PPG+P GE+
Sbjct: 1521 AGQKGDSGLPGPPGSPGPPGEV 1542
Score = 63.2 bits (152), Expect = 4e-10
Identities = 68/237 (28%), Positives = 84/237 (35%), Gaps = 28/237 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PG P S + G P G + G PG P Q+G
Sbjct: 838 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPG----------PRGQRGPTGP 887
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG-PGAGRPWPNPNSANS 228
GS P GP G G G PP GP P +G PG P P P +
Sbjct: 888 RGSRGARGPTGKPGPKGTSG---GDGPPGPPGERGPQGPQGPVGFPGPKGP-PGPPGKDG 943
Query: 229 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-- 286
+P G G G GPPG + P T + I +P PPG P G
Sbjct: 944 LPGHPGQRGE-TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPG------PPGEQ 996
Query: 287 --PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
PG+ G G G P ++G G + G P + G PG +G G
Sbjct: 997 GLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP--GERGLPGAQGAPGLKGGEGPQG 1051
Score = 55.5 bits (132), Expect = 7e-08
Identities = 80/279 (28%), Positives = 90/279 (32%), Gaps = 67/279 (24%)
Query: 106 PPNDGMPGGPI-PPGFFQPFMSPRYAGGPRPPIRMGNQPPG-----GVPGTQPLLP---- 155
PP P G + PPG P P G PP R G PG G PGT +LP
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPG--LPGADGLPGPPGTMLMLPFRYG 500
Query: 156 --NSMDPT-----------------RQQGHPNMGGSMQRMNPPRGMGPMG-------PGP 189
S PT +G P G R P G G G PGP
Sbjct: 501 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGP 560
Query: 190 QNYGSGMRPPPNSLGPAMPGINMGPGA--GRPWPNPNSANSIPYSSSSPGT-----YVGP 242
Q G++ PP G PG PGA GR P A PG + G
Sbjct: 561 QG-PRGVQGPPGPTG--KPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 617
Query: 243 PGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPH 302
G GPPG P D + + P G PG GP G +G
Sbjct: 618 RGPQGPPGPP----------GDDGMRGEDGEIGPRGL-------PGEAGPRGLLGPRGTP 660
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G +DG P P G PG P G G
Sbjct: 661 GAPGQPGMAGVDGPP--GPKGNMGPQGEPGPPGQQGNPG 697
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/264 (28%), Positives = 95/264 (35%), Gaps = 50/264 (18%)
Query: 109 DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPN 168
+G PG P G P P G PP G++ P G PG LP + G P
Sbjct: 441 EGPPGPAGPAGIMGP---PGLQGPTGPPGDPGDRGPPGRPG----LPGA------DGLPG 487
Query: 169 MGGSMQRMNPPRGMGPMGPGP-------------QNYGSGMRPPPNSLG-PAMPGINMGP 214
G+M M P R G GP Q +R PP +G PG GP
Sbjct: 488 PPGTM-LMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 546
Query: 215 G-------AGRPWP-NPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
G +G P P P P + PG G PG G G P P A D
Sbjct: 547 GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR-GRPGADGGRGMPGEPG-AKGDRGFDG 604
Query: 267 IYTMINPVPPGGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 322
+ + P G P G PG DG G G + P + G G + G P+ +P
Sbjct: 605 LPGL--PGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLG-PRGTPG 661
Query: 323 -----NISGISNPPGTPRDDGELG 341
++G+ PPG + G G
Sbjct: 662 APGQPGMAGVDGPPGPKGNMGPQG 685
Score = 53.9 bits (128), Expect = 2e-07
Identities = 70/237 (29%), Positives = 82/237 (34%), Gaps = 28/237 (11%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
GMPG P G P G G Q P G PG + + +G P
Sbjct: 589 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGE-IGPRGLPGE 647
Query: 170 GGSMQRMNPPRGM-GPMG-PG-PQNYG-SGMRPPPNSLGPAMPGINMGPGAGRPWPNPNS 225
G PRG+ GP G PG P G +G+ PP G NMGP G P P
Sbjct: 648 AG-------PRGLLGPRGTPGAPGQPGMAGVDGPPGPKG------NMGP-QGEPGPPGQQ 693
Query: 226 ANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPM 285
N P P +GPPG GP G P + + + G P
Sbjct: 694 GNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 753
Query: 286 GP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
GP G GP G G + GS G DG P G G D GE+G
Sbjct: 754 GPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP--------GFKGDMGLKGDRGEVG 802
Score = 52.4 bits (124), Expect = 6e-07
Identities = 52/169 (30%), Positives = 65/169 (38%), Gaps = 28/169 (16%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P +G+ G P P G P AG PP MG P G+PG L ++G
Sbjct: 1404 PGPEGLRGIPGPVG---EQGLPGAAGQDGPPGPMG---PPGLPG----LKGDPGSKGEKG 1453
Query: 166 HPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
HP + G + PP G G PG + G G+ P LGP P GP
Sbjct: 1454 HPGLIGLI---GPPGEQGEKGDRGLPGTQGSPGAKGDG-GIPGPAGPLGPPGPPGLPGPQ 1509
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 264
P N ++ P GPPG GPPG I P P S+ +
Sbjct: 1510 G----PKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKT 1554
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/214 (27%), Positives = 69/214 (32%), Gaps = 55/214 (25%)
Query: 146 GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP 205
GVP + S++ GH G Q+ P + PG G PP GP
Sbjct: 404 GVPAETDITETSIN-----GHGAYGEKGQKGEP----AVVEPGMLVEG-----PPGPAGP 449
Query: 206 AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSD 265
A GI PG P P G PG GPPG P +P AD
Sbjct: 450 A--GIMGPPGLQGPTGPP-----------------GDPGDRGPPGRPGLPG-ADGLPGPP 489
Query: 266 NIYTMINPVPPGGSRSNFPMGP------------------GSDGPMGGMGGMEPHHMNGS 307
M+ P GG S P G GPMG G P GS
Sbjct: 490 GTMLML-PFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS 548
Query: 308 LGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G+ G P P G+ PPG G+ G
Sbjct: 549 SGAKGESGDP--GPQGPRGVQGPPGPTGKPGKRG 580
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 77.4 bits (189), Expect = 2e-14
Identities = 75/236 (31%), Positives = 89/236 (37%), Gaps = 24/236 (10%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PG P + G P PP G P G PG LP P GHP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPG----LPGEPGPVGGGGHPGQ 1159
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P G GP Q G N P +PG++ G G P +
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG-GLPGIPGNPGL 1218
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGS 289
P PG + G PG GPPG P P PA NP P G P PG
Sbjct: 1219 PGPKGEPG-FHGFPGVQGPPGPPGSPGPALEGPKG-------NPGPQG--PPGRPGLPGP 1268
Query: 290 DGPMG--GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGN 343
+GP G G GG++ G+ G + GLP + G PPG + G G N
Sbjct: 1269 EGPPGLPGNGGIKGE--KGNPGQPGLPGLP-----GLKGDQGPPGLQGNPGRPGLN 1317
Score = 69.7 bits (169), Expect = 4e-12
Identities = 73/241 (30%), Positives = 96/241 (39%), Gaps = 37/241 (15%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
+DG+PG P P G P P + G P P G+ G PG Q +P ++G P
Sbjct: 79 DDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHD---GAPGPQG-IPGCNGTKGERGFP 134
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNS-LGPAMPGINMGPGAGRPWPNPNSA 226
G PP GP G GM+ P S + ++PG PG +P P
Sbjct: 135 GSPGFPGLQGPP---GPPGI------PGMKGEPGSIIMSSLPGPKGNPG----YPGPPGI 181
Query: 227 NSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 284
+P + PG GPPG GPPG P +P P + +N P G +
Sbjct: 182 QGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG--------LNFQGPKGEKGE-- 231
Query: 285 MGPGSDGPMGGMGGM--EPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTP-RDDGEL 340
G GP G G + + ++ GD GLP P GI PPG P + GE
Sbjct: 232 --QGLQGPPGPPGQISEQKRPIDVEFQKGD-QGLPGDRGPPGPPGIRGPPGPPGGEKGEK 288
Query: 341 G 341
G
Sbjct: 289 G 289
Score = 68.9 bits (167), Expect = 7e-12
Identities = 90/306 (29%), Positives = 108/306 (35%), Gaps = 65/306 (21%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPG-----FFQPFMSPRYAGGPRPPIRMGNQPPGGV 147
S A P L P DG+PG P P G F+ P G P P GN P G
Sbjct: 565 SPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGP--PGNPGLPGLPGNIGPMGP 622
Query: 148 PGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-----PG----PQNYGS---- 194
PG P P ++G + G+ + P G G PG P N G
Sbjct: 623 PGFGP-----PGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDV 677
Query: 195 GMRPPPNSLG-PAMPGINMG------PGAGRPW-PNPNSANSIPYSSSSPGTYVGPPGGG 246
G+ P G P +PGI PG G P P P IP +PGT G G
Sbjct: 678 GLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGT-PGRIGLE 736
Query: 247 GPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----------GSRSNFPMGPGS------ 289
GPPG P P P P PPG G R FP PG
Sbjct: 737 GPPGPPGFPGP----KGEPGFALPGPPGPPGLPGFKGALGPKGDR-GFPGPPGPPGRTGL 791
Query: 290 DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQ 349
DG G G + P+ G +G + G+ G+ PPG P G +G LH
Sbjct: 792 DGLPGPKGDVGPNGQPGPMGPPGLPGI---------GVQGPPGPPGIPGPIGQPGLHGIP 842
Query: 350 NDNYSP 355
+ P
Sbjct: 843 GEKGDP 848
Score = 68.2 bits (165), Expect = 1e-11
Identities = 85/269 (31%), Positives = 103/269 (38%), Gaps = 59/269 (21%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGN--QPPGGVPGTQ--PLLPNS 157
L IP N G+PG PGF P G P PP G + P G PG Q P P
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHG---FPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGL 1265
Query: 158 MDPTRQQGHPNMGG-SMQRMNP--------PRGMGPMGPGPQNYGSGMRPPPNSL--GPA 206
P G P GG ++ NP P G GP P G+ RP N + P
Sbjct: 1266 PGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGP-PGLQGNPGRPGLNGMKGDPG 1324
Query: 207 MPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
+PG+ PG P P SA G PG GPPG P +P P S +
Sbjct: 1325 LPGVPGFPGMKGPSGVPGSAGP-----------EGEPGLIGPPGPPGLPGP-----SGQS 1368
Query: 267 IYTMINPVPPG-----GSRS----NFPMG-PGSDGPMG-----------GMGGME-PHHM 304
I + PPG G + P G PG GP G G GG + +
Sbjct: 1369 IIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGL 1428
Query: 305 NGSLGSGDIDGLPKNSPNNISGISNPPGT 333
G G+ +DG P P+ + G PPGT
Sbjct: 1429 PGQPGTRGLDGPP--GPDGLQGPPGPPGT 1455
Score = 67.0 bits (162), Expect = 2e-11
Identities = 78/265 (29%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 98 PSPV----LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 153
P PV + + N G PG P P G P + G P P G G+PG P
Sbjct: 628 PGPVGEKGIQGVAGNPGQPGIPGPKG--DPGQTITQPGKPGLPGNPGRDGDVGLPG-DPG 684
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMG-PMGPGPQNYGSGMRPPPNSLG-PAMPGIN 211
LP Q G P + GS P G+G P PGP+ + G+ PP + G P G+
Sbjct: 685 LPG------QPGLPGIPGSKGEPGIP-GIGLPGPPGPKGF-PGIPGPPGAPGTPGRIGLE 736
Query: 212 MGPGA-GRPWPNPNSANSIPYSSSSPGT--------------YVGPPGGGGPPGTPIMPS 256
PG G P P ++P PG + GPPG G G +P
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPG 796
Query: 257 PADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
P + M P PG P PG GP+G G H + G G GL
Sbjct: 797 PKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPG---LHGIPGEKGDPGPPGL 853
Query: 317 PKNSPNNISGISNPPGTPRDDGELG 341
P G PG P G G
Sbjct: 854 DVPGPPGERGSPGIPGAPGPIGPPG 878
Score = 65.9 bits (159), Expect = 6e-11
Identities = 74/251 (29%), Positives = 87/251 (34%), Gaps = 49/251 (19%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAG--GPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
G PG P P G P G GP P +G++ G PG P +P P QG P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGL-PGIPGVSGPKGYQGLP 987
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSAN 227
G P GP PGP+ G+ P +GP PG+ G +P P
Sbjct: 988 GDPGQPGLSGQPGLPGP--PGPKG-NPGLPGQPGLIGP--PGLK-GTIGDMGFPGPQGVE 1041
Query: 228 SIPYSSSSPGTYVGPPGGGGPPGTPIMPS-PADSTNSSDNIYTMINPVPPGGSRSNFPMG 286
GPPG G PG P P P + D PG S P
Sbjct: 1042 -------------GPPGPSGVPGQPGSPGLPGQKGDKGD----------PGISSIGLPGL 1078
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN----------------SPNNISGISNP 330
PG G G G + GS+G + GLP P GIS P
Sbjct: 1079 PGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP 1138
Query: 331 PGTPRDDGELG 341
PG P GE G
Sbjct: 1139 PGNPGLPGEPG 1149
Score = 65.9 bits (159), Expect = 6e-11
Identities = 73/246 (29%), Positives = 86/246 (34%), Gaps = 31/246 (12%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
+P G PG P P G P +P G P P +G GG PG QP P Q
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGP---VGG---GGHPG-QPGPPGEKGKPGQD 1172
Query: 165 GHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPN 224
G P G P G G GP SG + +PGI PG P P
Sbjct: 1173 GIPGPAGQKGEPGQP-GFGNPGPPGLPGLSGQKG-----DGGLPGIPGNPGLPGPKGEPG 1226
Query: 225 -----SANSIPYSSSSPGTYV----GPPGGGGPPGTPIMPSPADSTNSSDN---IYTMIN 272
P SPG + G PG GPPG P +P P N N
Sbjct: 1227 FHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGN 1286
Query: 273 PVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP----KNSPNNISGIS 328
P PG P G GP G G +NG G + G+P P+ + G +
Sbjct: 1287 PGQPG--LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1344
Query: 329 NPPGTP 334
P G P
Sbjct: 1345 GPEGEP 1350
Score = 65.5 bits (158), Expect = 7e-11
Identities = 84/312 (26%), Positives = 97/312 (31%), Gaps = 71/312 (22%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRY------AGGPRPPIRMGNQPP 144
D P P+ P G+ G P PPG P P G P PP PP
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP 859
Query: 145 G-----GVPGTQ-----PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------- 186
G G+PG P P G P G M M PP GP+G
Sbjct: 860 GERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 187 --------------PGPQNYGSGMRPP----------PNSLG-------PAMPGINMGPG 215
PGP P PN LG P +PGI PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGI---PG 976
Query: 216 AGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 270
P +P PG GPPG G PG P P I M
Sbjct: 977 VS----GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDM 1032
Query: 271 INPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 329
P P G P G PG G G+ G + + + S + GLP P G+
Sbjct: 1033 GFPGPQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLPGLP--GPKGEPGLPG 1089
Query: 330 PPGTPRDDGELG 341
PG P G +G
Sbjct: 1090 YPGNPGIKGSVG 1101
Score = 60.1 bits (144), Expect = 3e-09
Identities = 80/289 (27%), Positives = 101/289 (34%), Gaps = 56/289 (19%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQ---PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
S ++ ++P G PG P PPG P P G P PP MG P G+PG + +
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMG 219
Query: 156 -NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------PGPQNYGSGMRPPPNSLG-PA 206
N P ++G + G PP GP G P + G + P G P
Sbjct: 220 LNFQGPKGEKGEQGLQG------PP---GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPG 270
Query: 207 MPGINMGPG-----------------AGRPWPN-PNSANSIPYSSSSPGTYVGPP----- 243
PGI PG G+P + N IP PG Y G P
Sbjct: 271 PPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPG-YPGEPGRDGE 329
Query: 244 ----GGGGPPGTP--IMPSPADSTNSSDNIYTMINPVPPGGSRSNFP---MGPGSDGPMG 294
G GPPG P ++P P + + +P FP PG GP G
Sbjct: 330 KGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPG 389
Query: 295 G--MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
MG P G G +G P S G+ PG P G G
Sbjct: 390 AAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG 438
Score = 56.2 bits (134), Expect = 4e-08
Identities = 58/193 (30%), Positives = 68/193 (35%), Gaps = 38/193 (19%)
Query: 164 QGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG----PAMPGINMGPGA--- 216
+GHP + G P GP GP Q G+ PP G P +PG PG
Sbjct: 56 EGHPGLPGF------PGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGM 109
Query: 217 ----GRPWPNP-NSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 271
G P P N PG+ G PG GPPG P +P S I
Sbjct: 110 PGHDGAPGPQGIPGCNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGS---IIMSS 165
Query: 272 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPP 331
P P G PG GP G G P + G +G P + G PP
Sbjct: 166 LPGPKG--------NPGYPGPPGIQGLPGPTGIPGPIG--------PPGPPGLMGPPGPP 209
Query: 332 GTPRDDGELGGNF 344
G P G +G NF
Sbjct: 210 GLPGPKGNMGLNF 222
Score = 51.6 bits (122), Expect = 1e-06
Identities = 66/261 (25%), Positives = 81/261 (31%), Gaps = 48/261 (18%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQP----FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
P L P G+PG P P G P P G P P G Q GV G +
Sbjct: 422 PGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTC 481
Query: 156 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
+ T G P G PP +G G + +G P P +PG PG
Sbjct: 482 FNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGL--PGIPGAPGAPG 539
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 275
P + P G +G PG G PG P T D +
Sbjct: 540 FPGSKGEPGDILTFPGMKGDKGE-LGSPGAPGLPGLP-------GTPGQDGL-------- 583
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN---------------S 320
PG GP G GG+ G G+ + GLP N
Sbjct: 584 -----------PGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVG 632
Query: 321 PNNISGISNPPGTPRDDGELG 341
I G++ PG P G G
Sbjct: 633 EKGIQGVAGNPGQPGIPGPKG 653
Score = 51.2 bits (121), Expect = 1e-06
Identities = 75/267 (28%), Positives = 87/267 (32%), Gaps = 39/267 (14%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRM----GNQPPGGVPGTQ--PLLPNS-----M 158
G G P PPG P G + I + G + G PG Q P LP M
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 159 DPTRQQGHPNMGGSMQRMNPPRGM---GPMGPGPQNYGSGMRPPPNSLGPAMPGIN--MG 213
P G P G PP G+ GP G Q G+ PP GP +P +
Sbjct: 394 GPPGPPGFPGERGQKGDEGPP-GISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICE 452
Query: 214 PGAGRPWPNPNSA-----------------NSIPYSSSSPGTYVGPPGGGGPPGTPIMPS 256
PG P +P N I S P G PG GPPG+ P
Sbjct: 453 PGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPG 512
Query: 257 PADSTNSSDNIYTMINPVPPGG-SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDG 315
+ P PG FP G G + GM+ G LGS G
Sbjct: 513 QKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD--KGELGSPGAPG 570
Query: 316 LPKNSPNNISGISNPPGTPRDDGELGG 342
LP G PG P GE GG
Sbjct: 571 LP--GLPGTPGQDGLPGLPGPKGEPGG 595
Score = 45.8 bits (107), Expect = 6e-05
Identities = 51/188 (27%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP---LLPN 156
P L + + G+PG P PG P P AG P +G P G+PG ++
Sbjct: 1314 PGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKG 1373
Query: 157 SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA 216
P G P + G P GP GP P PG N PG
Sbjct: 1374 DAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP-----------------PGDPGRNGLPG- 1415
Query: 217 GRPWPNPNSANSIPYSSSSPGTY-----VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 271
+ P PGT GP G GPPG P S A + + T
Sbjct: 1416 ---FDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSSVAHGFLITRHSQTTD 1472
Query: 272 NPVPPGGS 279
P P G+
Sbjct: 1473 APQCPQGT 1480
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 241 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRS-----NFPMGPGSDGPM 293
G PG G PG P P P P PPG G R FP PG G
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Query: 294 GGMGGMEPHHMNGSLGSGDIDGLPKNSPN--NISGISNPPGTPRDDGELGGNFLHSFQND 351
G G P + G G+ G P SP + G PPG P GE G + S
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERGFP-GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGP 169
Query: 352 NYSP 355
+P
Sbjct: 170 KGNP 173
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 77.0 bits (188), Expect = 2e-14
Identities = 81/267 (30%), Positives = 96/267 (35%), Gaps = 41/267 (15%)
Query: 95 AAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQP------PGGVP 148
A P P P G GG P G P P G P PP G + P G P
Sbjct: 892 AGPPGP-----PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAP 946
Query: 149 GTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQ--NYGSGMRPPPNSLGP 205
GT P Q+G + G P GP G PG Q + SG R PP +GP
Sbjct: 947 GT----PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP 1002
Query: 206 AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTY--------VGPPGGGGPPGTPIMPSP 257
PG+ PG P + S P SPG GPPG G PG P P
Sbjct: 1003 --PGLAGPPGESGREGAPGAEGS-PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGP 1059
Query: 258 ADSTNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
A + P P G P+GP G+ GP G G G G I G
Sbjct: 1060 AGKSGDRGET----GPAGPAG-----PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG- 1109
Query: 317 PKNSPNNISGISNPPGTPRDDGELGGN 343
+ + G PPG+P + G G +
Sbjct: 1110 -HRGFSGLQGPPGPPGSPGEQGPSGAS 1135
Score = 74.7 bits (182), Expect = 1e-13
Identities = 85/283 (30%), Positives = 100/283 (35%), Gaps = 51/283 (18%)
Query: 97 APSPVLGNIPPNDGMPGGPIPP---------GFFQPFMSPRY----AGGPRPPIRMGNQP 143
A P IP G+PG P PP G F P +S Y GG P MG
Sbjct: 126 AGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSG 185
Query: 144 PGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGS--------- 194
P G+PG P + P QG P G P GP GP +N
Sbjct: 186 PRGLPGP----PGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP 241
Query: 195 GMRPPPNSLGP-AMPGINMGPG-------------AGRPWP-NPNSANSIPYSSSSPGTY 239
G R PP G +PG PG G P P P + +PG
Sbjct: 242 GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG-Q 300
Query: 240 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGG 298
+GP G G G P P PA +D P P G P G PG G +G G
Sbjct: 301 MGPRGLPGERGRPGAPGPA-GARGNDGATGAAGPPGPTG-----PAGPPGFPGAVGAKGE 354
Query: 299 MEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
P GS G + G P P +G + P G P DG+ G
Sbjct: 355 AGPQGPRGSEGPQGVRGEP--GPPGPAGAAGPAGNPGADGQPG 395
Score = 70.1 bits (170), Expect = 3e-12
Identities = 80/267 (29%), Positives = 92/267 (34%), Gaps = 48/267 (17%)
Query: 95 AAAPSPVLGN--IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP 152
A PS G P G+ G P P G PR A G P G + G PG
Sbjct: 669 APGPSGARGERGFPGERGVQGPPGPAG-------PRGANGA--PGNDGAKGDAGAPGA-- 717
Query: 153 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-----GPQNYG-SGMRPPPNSLGPA 206
P S QG P G+ P G GP P G G+ P GPA
Sbjct: 718 --PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPA 775
Query: 207 -MPGINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADS 260
PG G P P A P PG + GPPG G PG P A +
Sbjct: 776 GAPGDKGESGPSGP-AGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA 834
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-- 317
+ PPG P GP G GP+G +G GS G G P
Sbjct: 835 KGDAG---------PPG------PAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGA 879
Query: 318 --KNSPNNISGISNPPGTPRDDGELGG 342
+ P SG + PPG P G+ GG
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGG 906
Score = 65.1 bits (157), Expect = 9e-11
Identities = 74/267 (27%), Positives = 94/267 (35%), Gaps = 26/267 (9%)
Query: 81 EHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMG 140
E S A S A P +P G+ G P PG P GP P
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG-------PDGKTGPPGPAGQD 562
Query: 141 NQP-PGGVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMR 197
+P P G PG Q + P G P G PP +GP G + +G +
Sbjct: 563 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE---AGAQ 619
Query: 198 PPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSP 257
PP GPA GP AG P +P + PG G PG G PG P P
Sbjct: 620 GPPGPAGPAGERGEQGP-AGSP-----GFQGLPGPAGPPGE-AGKPGEQGVPGDLGAPGP 672
Query: 258 ADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
+ + PPG + G PG+DG G G GS G+ + G+
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA---PGAPGSQGAPGLQGM 729
Query: 317 PKNSPNNISGISNPPGTPRDDGELGGN 343
P +G+ P G D G G +
Sbjct: 730 P--GERGAAGLPGPKGDRGDAGPKGAD 754
Score = 63.9 bits (154), Expect = 2e-10
Identities = 82/287 (28%), Positives = 95/287 (33%), Gaps = 56/287 (19%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMS---------------------PRYAG 131
S A P+ G P + G PG P P GF P + P AG
Sbjct: 787 SGPAGPTGARG-APGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Query: 132 GPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQ 190
PP +GN G G + S P G P G + P GP G PGP
Sbjct: 846 PAGPPGPIGNVGAPGAKGAR----GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA 901
Query: 191 NYGSGMRP--------------PPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSP 236
G P PP GPA G PGA P P + P +
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPA--GEKGSPGADGPAGAPGTPG--PQGIAGQ 957
Query: 237 GTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGG 295
VG PG G G P +P P+ PPG PMG PG GP G
Sbjct: 958 RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG------PMGPPGLAGPPGE 1011
Query: 296 MGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELG 341
G G+ GS DG P +G + PPG P G G
Sbjct: 1012 SG---REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 1055
Score = 62.8 bits (151), Expect = 5e-10
Identities = 72/248 (29%), Positives = 84/248 (33%), Gaps = 31/248 (12%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
NDG G PPG P P + G G Q P G G Q + + G P
Sbjct: 324 NDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV-------RGEPGPP 376
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSAN 227
G+ P G G N G+ P G P GPG G P P NS
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG-GPPGPKGNSGE 435
Query: 228 -SIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 284
P S G GP G GPPG P+ + + P G R
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPG----PAGEEGKRGARGEPGPTGLPGPPGERG--- 488
Query: 285 MGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN-----------NISGISNPPGT 333
GPGS G G G P G GS G PK SP G++ PG+
Sbjct: 489 -GPGSRGFPGADGVAGPKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLPGAKGLTGSPGS 546
Query: 334 PRDDGELG 341
P DG+ G
Sbjct: 547 PGPDGKTG 554
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/165 (32%), Positives = 65/165 (39%), Gaps = 29/165 (17%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAG-----GPRPPIR-MGNQPPGGVPGTQPLLPNSMD 159
PP G PG P PG P G GP P+ +G + P G G +
Sbjct: 1044 PP--GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR----GDKG 1097
Query: 160 PTRQQG------HPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINM 212
T +QG H G PP G GP + +G R PP S G P G+N
Sbjct: 1098 ETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG 1157
Query: 213 GPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPS 256
PG G P P + ++ P VGPPG GPPG P PS
Sbjct: 1158 LPGPIGPPGPRGRTGDAGP---------VGPPGPPGPPGPPGPPS 1193
Score = 52.0 bits (123), Expect = 8e-07
Identities = 69/242 (28%), Positives = 88/242 (36%), Gaps = 67/242 (27%)
Query: 127 PRYAGGPRPPIRMGNQPPG--GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGP 184
P+ GPR P R PPG G+PG QP LP P G P +GG+
Sbjct: 113 PKGDTGPRGP-RGPAGPPGRDGIPG-QPGLPGPPGPPGPPGPPGLGGNF----------- 159
Query: 185 MGPGPQ-NYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPP 243
PQ +YG + ++ G ++PG MGP R P GPP
Sbjct: 160 ---APQLSYGYDEK---STGGISVPG-PMGPSGPRGLP-------------------GPP 193
Query: 244 GGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG----GSRSNFPMGPGSDGPMG----- 294
G GP G P +S + P PPG + P PG GP G
Sbjct: 194 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 253
Query: 295 ------GMGGMEPHH----MNGSLGSGDIDGLPKNSP-----NNISGISNPPGTPRDDGE 339
G+ GM+ H ++G+ G G PK P N G P G P + G
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG-PKGEPGSPGENGAPGQMGPRGLPGERGR 312
Query: 340 LG 341
G
Sbjct: 313 PG 314
Score = 44.7 bits (104), Expect = 1e-04
Identities = 57/209 (27%), Positives = 65/209 (31%), Gaps = 33/209 (15%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMD 159
P L P G G P G SP G P G P G PG P P +
Sbjct: 1003 PGLAGPPGESGREGAPGAEG------SPGRDGSPGAKGDRGETGPAGPPGA-PGAPGAPG 1055
Query: 160 PTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMP----GINMGPG 215
P G G P GP+GP +G + P G GI G
Sbjct: 1056 PV---GPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRG 1112
Query: 216 ----AGRPWPNPNSANSIPYSSSSPGTYVGPPGGG---------GPPGTPIMPSPADSTN 262
G P P + P +S P GPPG G PG P P T
Sbjct: 1113 FSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTG 1172
Query: 263 SSDNIYTMINPVPPGGSRSNFPMGPGSDG 291
+ + P PPG P GP S G
Sbjct: 1173 DAGPVGPPGPPGPPG------PPGPPSAG 1195
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/95 (32%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPG--GVPGTQPL--LPNSMDPTRQQG 165
G+ G P PPG P A GP P PPG G PG L LP + P +G
Sbjct: 1115 GLQGPPGPPGS-PGEQGPSGASGPAGP----RGPPGSAGAPGKDGLNGLPGPIGPPGPRG 1169
Query: 166 HPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 200
G + PP GP GP + P P
Sbjct: 1170 RTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQP 1204
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 76.3 bits (186), Expect = 4e-14
Identities = 84/277 (30%), Positives = 102/277 (36%), Gaps = 50/277 (18%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
P DG+ G PPG P P G P P + G G+PG L P +G
Sbjct: 43 PGQDGIDGEAGPPGLPGP---PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRD-GPPGPKG 98
Query: 166 HPNMGGSMQRMNPPRGMGPMG-PGPQNY--------GSGMRPPPNSLG-PAMPGINMGPG 215
P GS+ PP G+G G PGP G G+R PP G P +PG PG
Sbjct: 99 APGERGSLGPPGPP-GLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPG 157
Query: 216 -AGRPWPNPNSANSIPYSSSSPGTYVGPP------------------GGGGPPGTPIMPS 256
G P P A + S P GPP G G G P P
Sbjct: 158 PPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPG 217
Query: 257 PADSTNS-----SDNIYTMINPVPPGGSRSNFPMG-------PGSDGPMGGMGGMEPHHM 304
PA S + + P+ P G R P+G PG+ G G G P
Sbjct: 218 PAGLPGSVGLQGPRGLRGLPGPLGPPGDRG--PIGFRGPPGIPGAPGKAGDRGERGPEGF 275
Query: 305 NGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G PK +P ++G S PG P DG+ G
Sbjct: 276 RGPKGDLGRPG-PKGTP-GVAGPSGEPGMPGKDGQNG 310
Score = 71.6 bits (174), Expect = 1e-12
Identities = 73/240 (30%), Positives = 85/240 (35%), Gaps = 26/240 (10%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G+PG P PPG G PP G P G PG P G P +
Sbjct: 29 GLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGK----PGKPGEAGLPGLPGV 84
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G R PP GP G + G PP G +PG G P P
Sbjct: 85 DGLTGRDGPP---GPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGP-PGGIGLRGP 140
Query: 230 PYSSSSPGTYVGPPGGGGPPGTP-IMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-- 286
P S PG GPPG GPPG P ++P A +I P PPG P G
Sbjct: 141 PGPSGLPG-LPGPPGPPGPPGHPGVLPEGATDL-QCPSICPPGPPGPPGMPGFKGPTGYK 198
Query: 287 -----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G DG G G P + GS+G P + G+ P G P D G +G
Sbjct: 199 GEQGEVGKDGEKGDPGPPGPAGLPGSVG--------LQGPRGLRGLPGPLGPPGDRGPIG 250
Score = 55.8 bits (133), Expect = 6e-08
Identities = 69/260 (26%), Positives = 86/260 (33%), Gaps = 45/260 (17%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG P P G G P G G+PG + + P+ G
Sbjct: 412 GDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDK----GELGPSGLVGPKGE 467
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG----PAMPGINMGPGAGRPWPNPNS 225
GS + P G GP + G+ PP LG P +PGI PG +
Sbjct: 468 SGSRGELGPK---GTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQR 524
Query: 226 ANSI---------------------PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 264
+ P S PG GPPG GPPG+ P
Sbjct: 525 IRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGP-AGPPGPPGPPGSIGHPGARGPPGYR 583
Query: 265 DNIYTMINPVPPG--GSRSNF-PMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP 321
+ +P P G G R + G G DGP G G P + G+ G DG P
Sbjct: 584 GPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQ-DGAP---- 638
Query: 322 NNISGISNPPGTPRDDGELG 341
G PPG P G +G
Sbjct: 639 ----GEPGPPGDPGLPGAIG 654
Score = 52.4 bits (124), Expect = 6e-07
Identities = 82/290 (28%), Positives = 94/290 (32%), Gaps = 65/290 (22%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
PP G PG P PGF P Y G + G + G PG L P S+ QG
Sbjct: 179 PP--GPPGPPGMPGFKGP---TGYKGEQGEVGKDGEKGDPGPPGPAGL-PGSVG---LQG 229
Query: 166 HPNMGGSMQRMNPPRGMGPMG-------PG-PQNYGS-GMRPPPNSLGP----AMPGINM 212
+ G + PP GP+G PG P G G R P GP PG
Sbjct: 230 PRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKG 289
Query: 213 GPGAGRP-----WPNPNSANSIPYSSSSPGTYV--GPPGGGGPPGTPIMPSPADSTNSS- 264
PG P P + N +P G G PG GP G P +P A S
Sbjct: 290 TPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKG 349
Query: 265 --------DNIYTMINPVPPG-----GSRSNF----------PMGP----------GSDG 291
P PG G R P GP G G
Sbjct: 350 ERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKG 409
Query: 292 PMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
MG G P + G +G G P GI+ G P D GELG
Sbjct: 410 SMGDPGLPGPQGLRGDVGDRGPGGAA--GPKGDQGIAGSDGLPGDKGELG 457
Score = 49.7 bits (117), Expect = 4e-06
Identities = 73/259 (28%), Positives = 91/259 (35%), Gaps = 35/259 (13%)
Query: 100 PVLGN--IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP----- 152
P LG +P G G PPG P +G P P G P G PG P
Sbjct: 112 PGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATD 171
Query: 153 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGIN 211
L S+ P G P M G P G G ++ G PP G P G+
Sbjct: 172 LQCPSICPPGPPGPPGMPGF---KGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQ 228
Query: 212 MGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPA-DSTNSSDNIYTM 270
P +P PG GP G GPPG P P A D +
Sbjct: 229 ----------GPRGLRGLPGPLGPPGDR-GPIGFRGPPGIPGAPGKAGDRGERGPEGFR- 276
Query: 271 INPVPPGGSRSNFPMG-PGSDGPMG--GMGGMEPHH----MNGSLGSGDIDGLP-KNSPN 322
P G P G PG GP G GM G + + ++G G +G P + PN
Sbjct: 277 ---GPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPN 333
Query: 323 NISGISNPPGTPRDDGELG 341
+ G+ G+ + GE G
Sbjct: 334 GLPGLPGRAGSKGEKGERG 352
Score = 36.2 bits (82), Expect = 0.047
Identities = 37/129 (28%), Positives = 43/129 (33%), Gaps = 19/129 (14%)
Query: 204 GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNS 263
G G+ PG P P + I + PG GPPG G PG P P A
Sbjct: 24 GAQRVGLPGPPGPPGP-PGKPGQDGIDGEAGPPGL-PGPPGPKGAPGKPGKPGEAGL--- 78
Query: 264 SDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNN 323
P PG G DGP G G G G + G P
Sbjct: 79 ---------PGLPGVDGLT-----GRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPG 124
Query: 324 ISGISNPPG 332
+G+S PPG
Sbjct: 125 EAGVSGPPG 133
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 75.5 bits (184), Expect = 7e-14
Identities = 82/274 (29%), Positives = 97/274 (35%), Gaps = 44/274 (16%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-- 150
S AA P G P +DG G P P GF G P PP G G PG
Sbjct: 1317 SGAAGPPGPKGP-PGDDGPKGSPGPVGF---------PGDPGPPGEPGPAGQDGPPGDKG 1366
Query: 151 ---QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYG---SGMRPPPNSLG 204
+P S PT G P G + PP GP G + +G+ PP G
Sbjct: 1367 DDGEPGQTGSPGPT---GEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG 1423
Query: 205 P----AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM--PSPA 258
P PG GP R P P +P SPG GPPG GPPG P + S
Sbjct: 1424 PIGPQGAPG-KPGPDGLRGIPGPVGEQGLP---GSPGP-DGPPGPMGPPGLPGLKGDSGP 1478
Query: 259 DSTNSSDNIYTMINPVPPGGSRSN--FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
+ +I P G + + P GS GP G G P G G + G
Sbjct: 1479 KGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP 1538
Query: 317 P----------KNSPNNISGISNPPGTPRDDGEL 340
P P +G PPG P GE+
Sbjct: 1539 PGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEV 1572
Score = 75.1 bits (183), Expect = 9e-14
Identities = 83/290 (28%), Positives = 100/290 (34%), Gaps = 36/290 (12%)
Query: 98 PSPV--LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRP-PIRMGNQPPGGVPGTQPLL 154
P PV LG + N+G PG P P G P A GP P R G Q P G P +
Sbjct: 1065 PGPVGALG-LKGNEGPPGPPGPAGS-PGERGPAGAAGPIGIPGRPGPQGPPG-PAGEKGA 1121
Query: 155 PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPG--------PQNYGS----GMRPPPNS 202
P P G + G + P +GP G P GS G + PP
Sbjct: 1122 PGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGP 1181
Query: 203 LGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTN 262
GP P GP P P + G G PG GP G +P P
Sbjct: 1182 TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPR-GFPGPPGPVGLQGLPGPPGEKG 1240
Query: 263 SSDNIYTMINPVPPGG-SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP---- 317
+ ++ M P PPG S P G GP GG+G G G GLP
Sbjct: 1241 ETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGG 1300
Query: 318 ------------KNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSP 355
++ P+ +G P G P DDG G F D P
Sbjct: 1301 PPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPP 1350
Score = 68.9 bits (167), Expect = 7e-12
Identities = 79/267 (29%), Positives = 92/267 (34%), Gaps = 44/267 (16%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--------LPNS 157
P GMPG PPG P GG PP G Q P G PG + + L +
Sbjct: 750 PGLPGMPGADGPPGHPGKEGPPGEKGGQGPP---GPQGPIGYPGPRGVKGADGIRGLKGT 806
Query: 158 MDPTRQQGHPNMGGSM------QRMNP--PRG----MGPMGPGPQNYGSGMRPPPNSLG- 204
+ G P G M + P PRG GP G G N G PP G
Sbjct: 807 KGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGK 866
Query: 205 ---PAMPGI--NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 259
P +PG GP +P AN +PG GP G GP G P
Sbjct: 867 LGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGK-PGPRGQRGPTGPRGERGPRG 925
Query: 260 STNSSDNIYTMINPVPPGGSRSNFPMGP----GSDGPMGGMGGMEPHHMNGSLGSGDIDG 315
T P P G S + P GP G +GP G G P G G + G
Sbjct: 926 ITG---------KPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPG 976
Query: 316 LP-KNSPNNISGISNPPGTPRDDGELG 341
P + G + PPG P G G
Sbjct: 977 HPGQRGETGFQGKTGPPGPPGVVGPQG 1003
Score = 67.4 bits (163), Expect = 2e-11
Identities = 80/270 (29%), Positives = 94/270 (34%), Gaps = 49/270 (18%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGV-----PGT--QPLLPNS---MD 159
G G P PPG P +P G PP +GN PG V PG +P LP
Sbjct: 1246 GQMGPPGPPGPRGPSGAPGADGPQGPPGGIGN--PGAVGEKGEPGEAGEPGLPGEGGPPG 1303
Query: 160 PTRQQGHPNMGGSMQRMNPPRGMGPMG-------PGPQNYGSGMRPP--PNSLG----PA 206
P ++G G PP GP G PGP + PP P G P
Sbjct: 1304 PKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPG 1363
Query: 207 MPGINMGPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG------------PPGT-- 251
G + PG G P P S P P GP G G PPG
Sbjct: 1364 DKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG 1423
Query: 252 PIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSG 311
PI P A D + + PV G P PG DGP G MG + G G
Sbjct: 1424 PIGPQGAPGKPGPDGLRGIPGPVGEQG----LPGSPGPDGPPGPMGPPGLPGLKGDSGPK 1479
Query: 312 DIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G P + G+ PPG + G+ G
Sbjct: 1480 GEKGHP-----GLIGLIGPPGEQGEKGDRG 1504
Score = 67.0 bits (162), Expect = 2e-11
Identities = 73/247 (29%), Positives = 85/247 (34%), Gaps = 42/247 (17%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 165
PP + P GP P F P G P PP G G PG Q+G
Sbjct: 944 PPGERGPNGPQGPTGF-----PGPKGPPGPP---GKDGLPGHPG-------------QRG 982
Query: 166 HPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG-AGRPWPNPN 224
G PP +GP GP + G R P GP PG PG AG+
Sbjct: 983 ETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGP--PGEQGLPGLAGK-----E 1035
Query: 225 SANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 284
P + PG GPPG G PG +P P + N P P G P
Sbjct: 1036 GTKGDPGPAGLPGK-DGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP 1094
Query: 285 MG----------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTP 334
G PG GP G G G G DGL P + G + P G P
Sbjct: 1095 AGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGL--QGPVGLPGPAGPVGPP 1152
Query: 335 RDDGELG 341
+DG+ G
Sbjct: 1153 GEDGDKG 1159
Score = 66.2 bits (160), Expect = 4e-11
Identities = 58/179 (32%), Positives = 70/179 (39%), Gaps = 18/179 (10%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQ---PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLL 154
P G I P G PG P P G P G P P G P G+PG L
Sbjct: 1418 PPGKTGPIGPQ-GAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPG----L 1472
Query: 155 PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRPPPNSLGPAMPGI 210
P ++GHP + G + PP G G PGPQ SG + GP+ P
Sbjct: 1473 KGDSGPKGEKGHPGLIGLI---GPPGEQGEKGDRGLPGPQG-SSGPKGEQGITGPSGPIG 1528
Query: 211 NMGPGA--GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNI 267
GP G P P +S P + GPPG GPPG I P P ++ + NI
Sbjct: 1529 PPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRNI 1587
Score = 64.7 bits (156), Expect = 1e-10
Identities = 76/297 (25%), Positives = 97/297 (32%), Gaps = 71/297 (23%)
Query: 98 PSPVLGNIPPN--DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
P +G P+ DG PG G F G P PP +G Q G+PG
Sbjct: 1184 PQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQ---GLPG------ 1234
Query: 156 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG----------- 204
P ++G G + +M PP GP GP G + PP +G
Sbjct: 1235 ----PPGEKGET---GDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEP 1287
Query: 205 -----PAMPGINMGPG----------------AGRPWPNPNSANSIPYSSSSPGTYVGPP 243
P +PG PG AG P P + P S P + G P
Sbjct: 1288 GEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDP 1347
Query: 244 GGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHH 303
G G PG P +P P G + P PG GP G G
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGP--PGKRGPPGPAGPEGRQG 1405
Query: 304 MNGSLGSGDIDGLP-------------KNSPNNISGISNP------PGTPRDDGELG 341
G+ G ++G P K P+ + GI P PG+P DG G
Sbjct: 1406 EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPG 1462
Score = 60.8 bits (146), Expect = 2e-09
Identities = 76/262 (29%), Positives = 92/262 (35%), Gaps = 42/262 (16%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPG-TQPLLPNSMDPTR----QQ 164
G PG P G P AG P R G+ G+PG T P D ++
Sbjct: 583 GEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEK 642
Query: 165 GHPNMGGSMQRMNPP-----RG----MGPMG----PGPQNYGSGMRPPPNSLGPAMPGI- 210
GH G PP RG +GP G PGP+ G + PP GP PG+
Sbjct: 643 GHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGL-LGPKGPPGPPGP--PGVT 699
Query: 211 ----------NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
N+GP G P P N P +GPPG GP G P +P +
Sbjct: 700 GMDGQPGPKGNVGP-QGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGA 758
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN 319
+ P GG P GP G GP G G + G+ G DG P
Sbjct: 759 DGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFP-- 816
Query: 320 SPNNISGISNPPGTPRDDGELG 341
G G D GE+G
Sbjct: 817 ------GFKGDMGIKGDRGEIG 832
Score = 57.4 bits (137), Expect = 2e-08
Identities = 78/260 (30%), Positives = 89/260 (34%), Gaps = 44/260 (16%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPG-----GVPGTQPLLPNSMDPTRQ 163
G G P P G P P+ GGP P +G PPG GVPG P P P
Sbjct: 829 GEIGPPGPRGEDGP-EGPKGRGGPNGDPGPLG--PPGEKGKLGVPGL-PGYPGRQGPKGS 884
Query: 164 QGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMP-GINMGPGAGRPWP 221
G P G+ G G G PGP+ G R P G P GI G+P P
Sbjct: 885 IGFPGFPGANGEKG---GRGTPGKPGPR----GQRGPTGPRGERGPRGIT-----GKPGP 932
Query: 222 NPNSANS---------IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMIN 272
NS P P + GP G GPPG +P +
Sbjct: 933 KGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 992
Query: 273 PVPPGGSRSNFPMG----------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSP 321
P PPG P G PG GP G G G+ G GLP K+ P
Sbjct: 993 PGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGP 1052
Query: 322 NNISGISNPPGTPRDDGELG 341
+ G G P G LG
Sbjct: 1053 PGLRGFPGDRGLPGPVGALG 1072
Score = 56.2 bits (134), Expect = 4e-08
Identities = 79/292 (27%), Positives = 98/292 (33%), Gaps = 59/292 (20%)
Query: 94 AAAAPSPVLGNIPPNDGMPGGPIPPGFFQP---FMSPRYAGGPRPPIRMGNQPPGGVPGT 150
A P ++ P +G G P PPG P P G P P G G PGT
Sbjct: 459 AIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGT 518
Query: 151 QPLLP---------NSMDP--TRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQN--YG 193
+LP S P + Q+ R+ GPMG PGP
Sbjct: 519 MLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGS 578
Query: 194 SGMRPPPNSLGPAMP-GINMGPG-AGRPW----PNPNSANSIPYSSSSPGT--------- 238
G++ P +GP P G+ PG AG+P + A +P + G
Sbjct: 579 GGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGL 638
Query: 239 -----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 293
+ G PG GPPG P D D+ V P G PG GP
Sbjct: 639 PGEKGHRGDPGPSGPPG-----PPGDDGERGDD-----GEVGPRGL-------PGEPGPR 681
Query: 294 GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFL 345
G +G P G G +DG P P G PG P G G L
Sbjct: 682 GLLGPKGPPGPPGPPGVTGMDGQP--GPKGNVGPQGEPGPPGQQGNPGAQGL 731
Score = 44.3 bits (103), Expect = 2e-04
Identities = 54/194 (27%), Positives = 66/194 (34%), Gaps = 34/194 (17%)
Query: 177 NPPRGMGPMGPG-PQNYGS---GMRPPPNSLGPAMPGINMGPGA---GRPWPNPNSANSI 229
+P +GPG P N + G+ P G + PG G P P +
Sbjct: 422 DPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPG 481
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP-- 287
P + P VG PG GPPG P +P AD M+ P GG GP
Sbjct: 482 PPGTMGPTGQVGDPGERGPPGRPGLPG-ADGLPGPPGTMLML-PFRFGGGGDAGSKGPMV 539
Query: 288 -------------------GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN-SPNNISGI 327
G GPMG G P G GSG + G P + P G+
Sbjct: 540 SAQESQAQAILQQARLALRGPAGPMGLTGRPGP---VGPPGSGGLKGEPGDVGPQGPRGV 596
Query: 328 SNPPGTPRDDGELG 341
PPG G G
Sbjct: 597 QGPPGPAGKPGRRG 610
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 75.1 bits (183), Expect = 9e-14
Identities = 69/258 (26%), Positives = 91/258 (35%), Gaps = 41/258 (15%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTR 162
+DG G P P GF G P PP G + G G +P P S PT
Sbjct: 1173 DDGPKGNPGPVGF---------PGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1223
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPN 222
+ G P G P G G G G + P ++G +GP P
Sbjct: 1224 ENGPPGPLGKRGPAGSPGSEGRQG------GKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1277
Query: 223 PNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMINPVP 275
P+ +P S G GPPG GPPG P + A + + + +I P
Sbjct: 1278 PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPG 1337
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPN 322
G + + + PG G G G M +G +G G GLP P
Sbjct: 1338 EQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK 1396
Query: 323 NISGISNPPGTPRDDGEL 340
G+ PPG P GE+
Sbjct: 1397 GEKGVQGPPGHPGPPGEV 1414
Score = 70.5 bits (171), Expect = 2e-12
Identities = 71/246 (28%), Positives = 82/246 (33%), Gaps = 22/246 (8%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQG 165
N G G P PPG P P AG P G Q G G + P QG
Sbjct: 1014 NKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQG 1073
Query: 166 HPNMGGSMQR------MNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRP 219
P G M PP GP GP N G + PP +G N+GP +
Sbjct: 1074 LPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVG------NLGPPGEKG 1127
Query: 220 WPNPNSANSIPYSS--SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
P + + I P G G G PG P P P T NP P G
Sbjct: 1128 EPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG---PKGNPGPVG 1184
Query: 278 GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGS-GDIDGLPKNSPNNISGISNPPGTPRD 336
P PG GP G G +G G G +N P G P G+P
Sbjct: 1185 FPGD--PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGS 1242
Query: 337 DGELGG 342
+G GG
Sbjct: 1243 EGRQGG 1248
Score = 67.8 bits (164), Expect = 1e-11
Identities = 79/278 (28%), Positives = 100/278 (35%), Gaps = 58/278 (20%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
+P + G G P G P G P PP MG + GVPG P P P
Sbjct: 675 VPGSRGEDGPEGPKGRTGP------TGDPGPPGLMGEKGKLGVPGL-PGYPGRQGPKGSL 727
Query: 165 GHPNMGGS--------MQRMNPPRG-MGPMGP----GPQ-----------NYGSGMRPPP 200
G P G+ + + PRG GP GP GP+ + G G PP
Sbjct: 728 GFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 787
Query: 201 NSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 259
G P G N PG P P P + +P G VG G GPPG P + P
Sbjct: 788 GERGLPGPQGPNGFPGPKGP-PGPPGKDGLPGHPGQRGE-VGFQGKTGPPGPPGVVGPQG 845
Query: 260 STNSSDNIYTMINPVPPG--------------GSRSN--FPMGPGSDGPMGGMGGMEPHH 303
+ + + +P PPG G++ + P PG DGP G G
Sbjct: 846 AAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERG 905
Query: 304 MNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
+ G+ G + G G S PPG GE G
Sbjct: 906 LPGTAGGPGLKG--------NEGPSGPPGPAGSPGERG 935
Score = 62.4 bits (150), Expect = 6e-10
Identities = 65/226 (28%), Positives = 80/226 (35%), Gaps = 28/226 (12%)
Query: 131 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP--- 187
G P P G++ G+PG LP ++GH G+ PP G G
Sbjct: 461 GMPGDPGVKGDRGFDGLPG----LPG------EKGHRGDTGAQGLPGPPGEDGERGDDGE 510
Query: 188 -GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGG 246
GP+ G P LGP P GP R P P S P GPPG
Sbjct: 511 IGPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG----PKGSLGPQGEPGPPGQQ 565
Query: 247 GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMN 305
G PGT +P P + P PG S+ P G PG +GP G G P
Sbjct: 566 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQ 625
Query: 306 GSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 351
G LG P + G+ G GE G + F+ D
Sbjct: 626 GPLG--------YPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD 663
Score = 61.2 bits (147), Expect = 1e-09
Identities = 83/264 (31%), Positives = 98/264 (37%), Gaps = 39/264 (14%)
Query: 113 GGPI-PPGFFQPFMSPRYAG-----GPRPPI----RMGNQPPGGVPGTQ--PLLPNSMDP 160
GGPI PPG P P AG G + PI R G Q P G+PG P +
Sbjct: 940 GGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD 999
Query: 161 TRQQGHPNMGGSMQRMN---PPRGMGPMGPGPQNYGSGMRPPPNSLGP----AMPGINMG 213
+ G P G+ PP GP+GP Q +G P + GP G
Sbjct: 1000 KGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGT 1059
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGT--PIMPSPADSTNSSDNIYT 269
G P P P +P S G VGP G GPPG P P+ AD
Sbjct: 1060 RGFNGP-PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVG 1118
Query: 270 MINPV----PPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLG-------SGDIDGLP 317
+ P PG S S G PG GP G G G G +GD DG P
Sbjct: 1119 NLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGD-DG-P 1176
Query: 318 KNSPNNISGISNPPGTPRDDGELG 341
K +P + G PG P + G G
Sbjct: 1177 KGNPGPV-GFPGDPGPPGEGGPRG 1199
Score = 60.5 bits (145), Expect = 2e-09
Identities = 72/248 (29%), Positives = 92/248 (37%), Gaps = 39/248 (15%)
Query: 106 PPNDGMPGGPIPPGF--FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL----LPNSMD 159
P DG+PG P G FQ P P PP +G P G T P+ P
Sbjct: 811 PGKDGLPGHPGQRGEVGFQGKTGP-----PGPPGVVG--PQGAAGETGPMGERGHPGPPG 863
Query: 160 PTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA-GR 218
P +QG P G P GP G ++ +G+R P G +PG GPG G
Sbjct: 864 PPGEQGLPGTAGKEGTKGDP---GPPGAPGKDGPAGLRGFPGERG--LPGTAGGPGLKGN 918
Query: 219 PWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG 278
P+ P + SPG G G GGP G P P P ++ G
Sbjct: 919 EGPS-----GPPGPAGSPGER-GAAGSGGPIGPPGRPGPQGPPGAAGE---------KGV 963
Query: 279 SRSNFPMGP----GSDGPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSPNNISGISNPPGT 333
P+GP G GP+G G P + G G G++ + G PPG
Sbjct: 964 PGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP 1023
Query: 334 PRDDGELG 341
P G +G
Sbjct: 1024 PGPIGPVG 1031
Score = 56.2 bits (134), Expect = 4e-08
Identities = 72/257 (28%), Positives = 85/257 (33%), Gaps = 35/257 (13%)
Query: 103 GNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTR 162
G I P G+PG P G P P G P PP G P G G S+ P
Sbjct: 509 GEIGPR-GLPGESGPRGLLGPKGPP---GIPGPPGVRGMDGPQGPKG-------SLGPQG 557
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPG-AGRPW 220
+ G P G+ P G +GP G + P G P MPG + PG G+
Sbjct: 558 EPGPPGQQGTPGTQGLPGPQGAIGP------HGEKGPQGKPGLPGMPGSDGPPGHPGKEG 611
Query: 221 PNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 280
P N P P Y GP G G G + D + G R
Sbjct: 612 PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG-HKGEKGEDGFPGFKGDIGVKGDR 670
Query: 281 S--NFPMGPGSDGP------MGGMGGMEPHHMNGSLGSGDIDGLP----KNSPNNISGIS 328
P G DGP G G P + G G + GLP + P G
Sbjct: 671 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGF- 729
Query: 329 NPPGTPRDDGELGGNFL 345
PG P GE G L
Sbjct: 730 --PGFPGASGEKGARGL 744
Score = 55.5 bits (132), Expect = 7e-08
Identities = 61/245 (24%), Positives = 78/245 (31%), Gaps = 53/245 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-PPG-GVPGTQPLLPNSMDPTRQQGHP 167
G PG P PPG P G P P G+ PPG G P Q + G P
Sbjct: 1157 GQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQP 1216
Query: 168 NMGGSMQRMNPPRGMGPMGPGP------QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWP 221
G PP +G GP + G G + P ++G +GP P
Sbjct: 1217 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKP 1276
Query: 222 NPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P+ +P S G GPPG GPPG P + A +
Sbjct: 1277 GPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAK--------------- 1321
Query: 277 GGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRD 336
G G G +G + P G G G+ P G+P
Sbjct: 1322 -----------GEKGHPGLIGLIGPPGEQGEKGD--------------RGLPGPQGSPGQ 1356
Query: 337 DGELG 341
GE+G
Sbjct: 1357 KGEMG 1361
Score = 50.8 bits (120), Expect = 2e-06
Identities = 69/243 (28%), Positives = 76/243 (31%), Gaps = 29/243 (11%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPG----TQPLLPNSMDPT 161
P GMPG PPG + G PP GNQ P G G P +D
Sbjct: 592 PGLPGMPGSDGPPG---------HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGI 642
Query: 162 R-QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPW 220
R +GH G P G +G G+ GP P GP G P
Sbjct: 643 RGLKGHK---GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGP-TGDPG 698
Query: 221 P----NPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P +P PG GP G G PG P + S P
Sbjct: 699 PPGLMGEKGKLGVPGLPGYPGRQ-GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPT 757
Query: 277 GGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
G P G G G G GG PH G G G PN G PPG P
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG-----PNGFPGPKGPPGPPG 812
Query: 336 DDG 338
DG
Sbjct: 813 KDG 815
Score = 50.4 bits (119), Expect = 2e-06
Identities = 78/323 (24%), Positives = 96/323 (29%), Gaps = 101/323 (31%)
Query: 109 DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-PPG-----------GVPGTQPLLP- 155
+G PG P G P P G P P G + PPG G PGT +LP
Sbjct: 312 EGPPGPEGPAGLIGP---PGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPF 368
Query: 156 -----------------------------------------NSMDPTRQQGHPNMGGSMQ 174
P Q G P + G
Sbjct: 369 RFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESG 428
Query: 175 RMNPPRGMGPMG-PGPQNY--------GSGMRPPPNSLG----------PAMPGI--NMG 213
+ P GP G GP G R P G P +PG + G
Sbjct: 429 DLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRG 488
Query: 214 PGAGRPWPNPNSAN------------SIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPAD 259
+ P P + +P S G GPPG GPPG M P
Sbjct: 489 DTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG 548
Query: 260 STNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-K 318
S + P PPG + PG+ G G G + PH G G + G+P
Sbjct: 549 PKGS---LGPQGEPGPPGQQGT-----PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGS 600
Query: 319 NSPNNISGISNPPGTPRDDGELG 341
+ P G PPGT + G G
Sbjct: 601 DGPPGHPGKEGPPGTKGNQGPSG 623
Score = 48.5 bits (114), Expect = 9e-06
Identities = 65/216 (30%), Positives = 76/216 (35%), Gaps = 32/216 (14%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT 150
D A AP G + P G G P P G S G P + G P G PG
Sbjct: 1254 DPGAIGAPGKT-GPVGPA-GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1311
Query: 151 QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGS--GMRPPPNSLG 204
P L ++GHP + G + PP G G PGPQ G P + G
Sbjct: 1312 -PGLRGDAGAKGEKGHPGLIGLI---GPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASG 1367
Query: 205 PAMPGINMGPGAGRPWP-NPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADST 261
P PG GP G P P P A G GPPG GPPG I P P
Sbjct: 1368 PIGPG---GP-PGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMP 1423
Query: 262 NSS------DNIYTMINPVPPGGSRSNFPMGPGSDG 291
+ + +P GG+ PGS G
Sbjct: 1424 KKTRRSVDGSRLMQEDEAIPTGGA-------PGSPG 1452
Score = 42.7 bits (99), Expect = 5e-04
Identities = 60/242 (24%), Positives = 80/242 (33%), Gaps = 40/242 (16%)
Query: 133 PRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSM-----QRMNPPRGM-GPMG 186
P R Q P + Q P S DPT + + S+ + + PRG+ G G
Sbjct: 241 PHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGEKG 300
Query: 187 -PGPQNYGSGMRPPPNSLGPA----MPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVG 241
P G + PP GPA PGI PG P +P G
Sbjct: 301 EPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG---PVGDPGER--------------G 343
Query: 242 PPGGGGPPGTPIMPSPADST-------NSSDNIYTMINPVPPGGSRSNFPMG----PGSD 290
PPG G PG+ P P ++ S + +++ G
Sbjct: 344 PPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPP 403
Query: 291 GPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQ 349
GPMG G P GS G G+ L P G++ PPG G G +
Sbjct: 404 GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMP 463
Query: 350 ND 351
D
Sbjct: 464 GD 465
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 75.1 bits (183), Expect = 9e-14
Identities = 69/258 (26%), Positives = 91/258 (35%), Gaps = 41/258 (15%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTR 162
+DG G P P GF G P PP G + G G +P P S PT
Sbjct: 1152 DDGPKGNPGPVGF---------PGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1202
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPN 222
+ G P G P G G G G + P ++G +GP P
Sbjct: 1203 ENGPPGPLGKRGPAGSPGSEGRQG------GKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1256
Query: 223 PNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMINPVP 275
P+ +P S G GPPG GPPG P + A + + + +I P
Sbjct: 1257 PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPG 1316
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPN 322
G + + + PG G G G M +G +G G GLP P
Sbjct: 1317 EQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK 1375
Query: 323 NISGISNPPGTPRDDGEL 340
G+ PPG P GE+
Sbjct: 1376 GEKGVQGPPGHPGPPGEV 1393
Score = 70.5 bits (171), Expect = 2e-12
Identities = 71/246 (28%), Positives = 82/246 (33%), Gaps = 22/246 (8%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQG 165
N G G P PPG P P AG P G Q G G + P QG
Sbjct: 993 NKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQG 1052
Query: 166 HPNMGGSMQR------MNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRP 219
P G M PP GP GP N G + PP +G N+GP +
Sbjct: 1053 LPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVG------NLGPPGEKG 1106
Query: 220 WPNPNSANSIPYSS--SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
P + + I P G G G PG P P P T NP P G
Sbjct: 1107 EPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG---PKGNPGPVG 1163
Query: 278 GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGS-GDIDGLPKNSPNNISGISNPPGTPRD 336
P PG GP G G +G G G +N P G P G+P
Sbjct: 1164 FPGD--PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGS 1221
Query: 337 DGELGG 342
+G GG
Sbjct: 1222 EGRQGG 1227
Score = 67.8 bits (164), Expect = 1e-11
Identities = 79/278 (28%), Positives = 100/278 (35%), Gaps = 58/278 (20%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
+P + G G P G P G P PP MG + GVPG P P P
Sbjct: 654 VPGSRGEDGPEGPKGRTGP------TGDPGPPGLMGEKGKLGVPGL-PGYPGRQGPKGSL 706
Query: 165 GHPNMGGS--------MQRMNPPRG-MGPMGP----GPQ-----------NYGSGMRPPP 200
G P G+ + + PRG GP GP GP+ + G G PP
Sbjct: 707 GFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 766
Query: 201 NSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 259
G P G N PG P P P + +P G VG G GPPG P + P
Sbjct: 767 GERGLPGPQGPNGFPGPKGP-PGPPGKDGLPGHPGQRGE-VGFQGKTGPPGPPGVVGPQG 824
Query: 260 STNSSDNIYTMINPVPPG--------------GSRSN--FPMGPGSDGPMGGMGGMEPHH 303
+ + + +P PPG G++ + P PG DGP G G
Sbjct: 825 AAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERG 884
Query: 304 MNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
+ G+ G + G G S PPG GE G
Sbjct: 885 LPGTAGGPGLKG--------NEGPSGPPGPAGSPGERG 914
Score = 62.4 bits (150), Expect = 6e-10
Identities = 65/226 (28%), Positives = 80/226 (35%), Gaps = 28/226 (12%)
Query: 131 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP--- 187
G P P G++ G+PG LP ++GH G+ PP G G
Sbjct: 440 GMPGDPGVKGDRGFDGLPG----LPG------EKGHRGDTGAQGLPGPPGEDGERGDDGE 489
Query: 188 -GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGG 246
GP+ G P LGP P GP R P P S P GPPG
Sbjct: 490 IGPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG----PKGSLGPQGEPGPPGQQ 544
Query: 247 GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMN 305
G PGT +P P + P PG S+ P G PG +GP G G P
Sbjct: 545 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQ 604
Query: 306 GSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 351
G LG P + G+ G GE G + F+ D
Sbjct: 605 GPLG--------YPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD 642
Score = 61.2 bits (147), Expect = 1e-09
Identities = 83/264 (31%), Positives = 98/264 (37%), Gaps = 39/264 (14%)
Query: 113 GGPI-PPGFFQPFMSPRYAG-----GPRPPI----RMGNQPPGGVPGTQ--PLLPNSMDP 160
GGPI PPG P P AG G + PI R G Q P G+PG P +
Sbjct: 919 GGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD 978
Query: 161 TRQQGHPNMGGSMQRMN---PPRGMGPMGPGPQNYGSGMRPPPNSLGP----AMPGINMG 213
+ G P G+ PP GP+GP Q +G P + GP G
Sbjct: 979 KGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGT 1038
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGT--PIMPSPADSTNSSDNIYT 269
G P P P +P S G VGP G GPPG P P+ AD
Sbjct: 1039 RGFNGP-PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVG 1097
Query: 270 MINPV----PPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLG-------SGDIDGLP 317
+ P PG S S G PG GP G G G G +GD DG P
Sbjct: 1098 NLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGD-DG-P 1155
Query: 318 KNSPNNISGISNPPGTPRDDGELG 341
K +P + G PG P + G G
Sbjct: 1156 KGNPGPV-GFPGDPGPPGEGGPRG 1178
Score = 60.5 bits (145), Expect = 2e-09
Identities = 72/248 (29%), Positives = 92/248 (37%), Gaps = 39/248 (15%)
Query: 106 PPNDGMPGGPIPPGF--FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL----LPNSMD 159
P DG+PG P G FQ P P PP +G P G T P+ P
Sbjct: 790 PGKDGLPGHPGQRGEVGFQGKTGP-----PGPPGVVG--PQGAAGETGPMGERGHPGPPG 842
Query: 160 PTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA-GR 218
P +QG P G P GP G ++ +G+R P G +PG GPG G
Sbjct: 843 PPGEQGLPGTAGKEGTKGDP---GPPGAPGKDGPAGLRGFPGERG--LPGTAGGPGLKGN 897
Query: 219 PWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG 278
P+ P + SPG G G GGP G P P P ++ G
Sbjct: 898 EGPS-----GPPGPAGSPGER-GAAGSGGPIGPPGRPGPQGPPGAAGE---------KGV 942
Query: 279 SRSNFPMGP----GSDGPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSPNNISGISNPPGT 333
P+GP G GP+G G P + G G G++ + G PPG
Sbjct: 943 PGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP 1002
Query: 334 PRDDGELG 341
P G +G
Sbjct: 1003 PGPIGPVG 1010
Score = 56.2 bits (134), Expect = 4e-08
Identities = 72/257 (28%), Positives = 85/257 (33%), Gaps = 35/257 (13%)
Query: 103 GNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTR 162
G I P G+PG P G P P G P PP G P G G S+ P
Sbjct: 488 GEIGPR-GLPGESGPRGLLGPKGPP---GIPGPPGVRGMDGPQGPKG-------SLGPQG 536
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPG-AGRPW 220
+ G P G+ P G +GP G + P G P MPG + PG G+
Sbjct: 537 EPGPPGQQGTPGTQGLPGPQGAIGP------HGEKGPQGKPGLPGMPGSDGPPGHPGKEG 590
Query: 221 PNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 280
P N P P Y GP G G G + D + G R
Sbjct: 591 PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG-HKGEKGEDGFPGFKGDIGVKGDR 649
Query: 281 S--NFPMGPGSDGP------MGGMGGMEPHHMNGSLGSGDIDGLP----KNSPNNISGIS 328
P G DGP G G P + G G + GLP + P G
Sbjct: 650 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGF- 708
Query: 329 NPPGTPRDDGELGGNFL 345
PG P GE G L
Sbjct: 709 --PGFPGASGEKGARGL 723
Score = 55.5 bits (132), Expect = 7e-08
Identities = 61/245 (24%), Positives = 78/245 (31%), Gaps = 53/245 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-PPG-GVPGTQPLLPNSMDPTRQQGHP 167
G PG P PPG P G P P G+ PPG G P Q + G P
Sbjct: 1136 GQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQP 1195
Query: 168 NMGGSMQRMNPPRGMGPMGPGP------QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWP 221
G PP +G GP + G G + P ++G +GP P
Sbjct: 1196 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKP 1255
Query: 222 NPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P+ +P S G GPPG GPPG P + A +
Sbjct: 1256 GPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAK--------------- 1300
Query: 277 GGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRD 336
G G G +G + P G G G+ P G+P
Sbjct: 1301 -----------GEKGHPGLIGLIGPPGEQGEKGD--------------RGLPGPQGSPGQ 1335
Query: 337 DGELG 341
GE+G
Sbjct: 1336 KGEMG 1340
Score = 50.8 bits (120), Expect = 2e-06
Identities = 69/243 (28%), Positives = 76/243 (31%), Gaps = 29/243 (11%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPG----TQPLLPNSMDPT 161
P GMPG PPG + G PP GNQ P G G P +D
Sbjct: 571 PGLPGMPGSDGPPG---------HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGI 621
Query: 162 R-QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPW 220
R +GH G P G +G G+ GP P GP G P
Sbjct: 622 RGLKGHK---GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGP-TGDPG 677
Query: 221 P----NPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P +P PG GP G G PG P + S P
Sbjct: 678 PPGLMGEKGKLGVPGLPGYPGRQ-GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPT 736
Query: 277 GGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
G P G G G G GG PH G G G PN G PPG P
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG-----PNGFPGPKGPPGPPG 791
Query: 336 DDG 338
DG
Sbjct: 792 KDG 794
Score = 50.4 bits (119), Expect = 2e-06
Identities = 78/323 (24%), Positives = 96/323 (29%), Gaps = 101/323 (31%)
Query: 109 DGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-PPG-----------GVPGTQPLLP- 155
+G PG P G P P G P P G + PPG G PGT +LP
Sbjct: 291 EGPPGPEGPAGLIGP---PGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPF 347
Query: 156 -----------------------------------------NSMDPTRQQGHPNMGGSMQ 174
P Q G P + G
Sbjct: 348 RFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESG 407
Query: 175 RMNPPRGMGPMG-PGPQNY--------GSGMRPPPNSLG----------PAMPGI--NMG 213
+ P GP G GP G R P G P +PG + G
Sbjct: 408 DLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRG 467
Query: 214 PGAGRPWPNPNSAN------------SIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPAD 259
+ P P + +P S G GPPG GPPG M P
Sbjct: 468 DTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG 527
Query: 260 STNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-K 318
S + P PPG + PG+ G G G + PH G G + G+P
Sbjct: 528 PKGS---LGPQGEPGPPGQQGT-----PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGS 579
Query: 319 NSPNNISGISNPPGTPRDDGELG 341
+ P G PPGT + G G
Sbjct: 580 DGPPGHPGKEGPPGTKGNQGPSG 602
Score = 48.5 bits (114), Expect = 9e-06
Identities = 65/216 (30%), Positives = 76/216 (35%), Gaps = 32/216 (14%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT 150
D A AP G + P G G P P G S G P + G P G PG
Sbjct: 1233 DPGAIGAPGKT-GPVGPA-GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1290
Query: 151 QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGS--GMRPPPNSLG 204
P L ++GHP + G + PP G G PGPQ G P + G
Sbjct: 1291 -PGLRGDAGAKGEKGHPGLIGLI---GPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASG 1346
Query: 205 PAMPGINMGPGAGRPWP-NPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADST 261
P PG GP G P P P A G GPPG GPPG I P P
Sbjct: 1347 PIGPG---GP-PGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMP 1402
Query: 262 NSS------DNIYTMINPVPPGGSRSNFPMGPGSDG 291
+ + +P GG+ PGS G
Sbjct: 1403 KKTRRSVDGSRLMQEDEAIPTGGA-------PGSPG 1431
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/210 (25%), Positives = 69/210 (32%), Gaps = 35/210 (16%)
Query: 160 PTRQQGHPNMGGSMQRMNPPRGM-GPMG-PGPQNYGSGMRPPPNSLGPA----MPGINMG 213
P+R N Q + PRG+ G G P G + PP GPA PGI
Sbjct: 252 PSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGN 311
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADST-------NSSDN 266
PG P +P GPPG G PG+ P P ++ S
Sbjct: 312 PG---PVGDPGER--------------GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGG 354
Query: 267 IYTMINPVPPGGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSP 321
+ +++ G GPMG G P GS G G+ L P
Sbjct: 355 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP 414
Query: 322 NNISGISNPPGTPRDDGELGGNFLHSFQND 351
G++ PPG G G + D
Sbjct: 415 RGPQGLTGPPGKAGRRGRAGADGARGMPGD 444
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 75.1 bits (183), Expect = 9e-14
Identities = 69/258 (26%), Positives = 91/258 (35%), Gaps = 41/258 (15%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTR 162
+DG G P P GF G P PP G + G G +P P S PT
Sbjct: 1259 DDGPKGNPGPVGF---------PGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1309
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPN 222
+ G P G P G G G G + P ++G +GP P
Sbjct: 1310 ENGPPGPLGKRGPAGSPGSEGRQG------GKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1363
Query: 223 PNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMINPVP 275
P+ +P S G GPPG GPPG P + A + + + +I P
Sbjct: 1364 PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPG 1423
Query: 276 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPN 322
G + + + PG G G G M +G +G G GLP P
Sbjct: 1424 EQGEKGDRGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK 1482
Query: 323 NISGISNPPGTPRDDGEL 340
G+ PPG P GE+
Sbjct: 1483 GEKGVQGPPGHPGPPGEV 1500
Score = 70.5 bits (171), Expect = 2e-12
Identities = 71/246 (28%), Positives = 82/246 (33%), Gaps = 22/246 (8%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQG 165
N G G P PPG P P AG P G Q G G + P QG
Sbjct: 1100 NKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQG 1159
Query: 166 HPNMGGSMQR------MNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRP 219
P G M PP GP GP N G + PP +G N+GP +
Sbjct: 1160 LPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVG------NLGPPGEKG 1213
Query: 220 WPNPNSANSIPYSS--SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
P + + I P G G G PG P P P T NP P G
Sbjct: 1214 EPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG---PKGNPGPVG 1270
Query: 278 GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGS-GDIDGLPKNSPNNISGISNPPGTPRD 336
P PG GP G G +G G G +N P G P G+P
Sbjct: 1271 FPGD--PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGS 1328
Query: 337 DGELGG 342
+G GG
Sbjct: 1329 EGRQGG 1334
Score = 67.8 bits (164), Expect = 1e-11
Identities = 79/278 (28%), Positives = 100/278 (35%), Gaps = 58/278 (20%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
+P + G G P G P G P PP MG + GVPG P P P
Sbjct: 761 VPGSRGEDGPEGPKGRTGP------TGDPGPPGLMGEKGKLGVPGL-PGYPGRQGPKGSL 813
Query: 165 GHPNMGGS--------MQRMNPPRG-MGPMGP----GPQ-----------NYGSGMRPPP 200
G P G+ + + PRG GP GP GP+ + G G PP
Sbjct: 814 GFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 873
Query: 201 NSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 259
G P G N PG P P P + +P G VG G GPPG P + P
Sbjct: 874 GERGLPGPQGPNGFPGPKGP-PGPPGKDGLPGHPGQRGE-VGFQGKTGPPGPPGVVGPQG 931
Query: 260 STNSSDNIYTMINPVPPG--------------GSRSN--FPMGPGSDGPMGGMGGMEPHH 303
+ + + +P PPG G++ + P PG DGP G G
Sbjct: 932 AAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERG 991
Query: 304 MNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
+ G+ G + G G S PPG GE G
Sbjct: 992 LPGTAGGPGLKG--------NEGPSGPPGPAGSPGERG 1021
Score = 62.4 bits (150), Expect = 6e-10
Identities = 65/226 (28%), Positives = 80/226 (35%), Gaps = 28/226 (12%)
Query: 131 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP--- 187
G P P G++ G+PG LP ++GH G+ PP G G
Sbjct: 547 GMPGDPGVKGDRGFDGLPG----LPG------EKGHRGDTGAQGLPGPPGEDGERGDDGE 596
Query: 188 -GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGG 246
GP+ G P LGP P GP R P P S P GPPG
Sbjct: 597 IGPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG----PKGSLGPQGEPGPPGQQ 651
Query: 247 GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMN 305
G PGT +P P + P PG S+ P G PG +GP G G P
Sbjct: 652 GTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQ 711
Query: 306 GSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 351
G LG P + G+ G GE G + F+ D
Sbjct: 712 GPLG--------YPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD 749
Score = 61.2 bits (147), Expect = 1e-09
Identities = 83/264 (31%), Positives = 98/264 (37%), Gaps = 39/264 (14%)
Query: 113 GGPI-PPGFFQPFMSPRYAG-----GPRPPI----RMGNQPPGGVPGTQ--PLLPNSMDP 160
GGPI PPG P P AG G + PI R G Q P G+PG P +
Sbjct: 1026 GGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD 1085
Query: 161 TRQQGHPNMGGSMQRMN---PPRGMGPMGPGPQNYGSGMRPPPNSLGP----AMPGINMG 213
+ G P G+ PP GP+GP Q +G P + GP G
Sbjct: 1086 KGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGT 1145
Query: 214 PGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGT--PIMPSPADSTNSSDNIYT 269
G P P P +P S G VGP G GPPG P P+ AD
Sbjct: 1146 RGFNGP-PGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVG 1204
Query: 270 MINPV----PPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLG-------SGDIDGLP 317
+ P PG S S G PG GP G G G G +GD DG P
Sbjct: 1205 NLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGD-DG-P 1262
Query: 318 KNSPNNISGISNPPGTPRDDGELG 341
K +P + G PG P + G G
Sbjct: 1263 KGNPGPV-GFPGDPGPPGEGGPRG 1285
Score = 60.5 bits (145), Expect = 2e-09
Identities = 72/248 (29%), Positives = 92/248 (37%), Gaps = 39/248 (15%)
Query: 106 PPNDGMPGGPIPPGF--FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL----LPNSMD 159
P DG+PG P G FQ P P PP +G P G T P+ P
Sbjct: 897 PGKDGLPGHPGQRGEVGFQGKTGP-----PGPPGVVG--PQGAAGETGPMGERGHPGPPG 949
Query: 160 PTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGA-GR 218
P +QG P G P GP G ++ +G+R P G +PG GPG G
Sbjct: 950 PPGEQGLPGTAGKEGTKGDP---GPPGAPGKDGPAGLRGFPGERG--LPGTAGGPGLKGN 1004
Query: 219 PWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG 278
P+ P + SPG G G GGP G P P P ++ G
Sbjct: 1005 EGPS-----GPPGPAGSPGER-GAAGSGGPIGPPGRPGPQGPPGAAGE---------KGV 1049
Query: 279 SRSNFPMGP----GSDGPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSPNNISGISNPPGT 333
P+GP G GP+G G P + G G G++ + G PPG
Sbjct: 1050 PGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP 1109
Query: 334 PRDDGELG 341
P G +G
Sbjct: 1110 PGPIGPVG 1117
Score = 57.0 bits (136), Expect = 3e-08
Identities = 76/296 (25%), Positives = 97/296 (32%), Gaps = 71/296 (23%)
Query: 100 PVLGNIPPNDGMPGGPIPPG--FFQPFMSPRYAGGPRPPIRMGNQ--------------- 142
P +P +DG PG PPG PF GG + P+ +
Sbjct: 431 PGRAGLPGSDGAPG---PPGTSLMLPFRFGS-GGGDKGPVVAAQEAQAQAILQQARLALR 486
Query: 143 -PPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNY-------- 192
PPG + T P Q G P + G + P GP G GP
Sbjct: 487 GPPGPMGYT-----GRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAG 541
Query: 193 GSGMRPPPNSLG----------PAMPGI--NMGPGAGRPWPNPNSAN------------S 228
G R P G P +PG + G + P P +
Sbjct: 542 ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRG 601
Query: 229 IPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG 286
+P S G GPPG GPPG M P S + P PPG +
Sbjct: 602 LPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGS---LGPQGEPGPPGQQGT----- 653
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELG 341
PG+ G G G + PH G G + G+P + P G PPGT + G G
Sbjct: 654 PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 709
Score = 56.2 bits (134), Expect = 4e-08
Identities = 72/257 (28%), Positives = 85/257 (33%), Gaps = 35/257 (13%)
Query: 103 GNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTR 162
G I P G+PG P G P P G P PP G P G G S+ P
Sbjct: 595 GEIGPR-GLPGESGPRGLLGPKGPP---GIPGPPGVRGMDGPQGPKG-------SLGPQG 643
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPG-AGRPW 220
+ G P G+ P G +GP G + P G P MPG + PG G+
Sbjct: 644 EPGPPGQQGTPGTQGLPGPQGAIGP------HGEKGPQGKPGLPGMPGSDGPPGHPGKEG 697
Query: 221 PNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 280
P N P P Y GP G G G + D + G R
Sbjct: 698 PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG-HKGEKGEDGFPGFKGDIGVKGDR 756
Query: 281 S--NFPMGPGSDGP------MGGMGGMEPHHMNGSLGSGDIDGLP----KNSPNNISGIS 328
P G DGP G G P + G G + GLP + P G
Sbjct: 757 GEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGF- 815
Query: 329 NPPGTPRDDGELGGNFL 345
PG P GE G L
Sbjct: 816 --PGFPGASGEKGARGL 830
Score = 55.5 bits (132), Expect = 7e-08
Identities = 61/245 (24%), Positives = 78/245 (31%), Gaps = 53/245 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-PPG-GVPGTQPLLPNSMDPTRQQGHP 167
G PG P PPG P G P P G+ PPG G P Q + G P
Sbjct: 1243 GQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQP 1302
Query: 168 NMGGSMQRMNPPRGMGPMGPGP------QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWP 221
G PP +G GP + G G + P ++G +GP P
Sbjct: 1303 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKP 1362
Query: 222 NPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P+ +P S G GPPG GPPG P + A +
Sbjct: 1363 GPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAK--------------- 1407
Query: 277 GGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRD 336
G G G +G + P G G G+ P G+P
Sbjct: 1408 -----------GEKGHPGLIGLIGPPGEQGEKGD--------------RGLPGPQGSPGQ 1442
Query: 337 DGELG 341
GE+G
Sbjct: 1443 KGEMG 1447
Score = 50.8 bits (120), Expect = 2e-06
Identities = 69/243 (28%), Positives = 76/243 (31%), Gaps = 29/243 (11%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPG----TQPLLPNSMDPT 161
P GMPG PPG + G PP GNQ P G G P +D
Sbjct: 678 PGLPGMPGSDGPPG---------HPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGI 728
Query: 162 R-QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPW 220
R +GH G P G +G G+ GP P GP G P
Sbjct: 729 RGLKGHK---GEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGP-TGDPG 784
Query: 221 P----NPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P +P PG GP G G PG P + S P
Sbjct: 785 PPGLMGEKGKLGVPGLPGYPGRQ-GPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPT 843
Query: 277 GGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
G P G G G G GG PH G G G PN G PPG P
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG-----PNGFPGPKGPPGPPG 898
Query: 336 DDG 338
DG
Sbjct: 899 KDG 901
Score = 48.5 bits (114), Expect = 9e-06
Identities = 65/216 (30%), Positives = 76/216 (35%), Gaps = 32/216 (14%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT 150
D A AP G + P G G P P G S G P + G P G PG
Sbjct: 1340 DPGAIGAPGKT-GPVGPA-GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1397
Query: 151 QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGS--GMRPPPNSLG 204
P L ++GHP + G + PP G G PGPQ G P + G
Sbjct: 1398 -PGLRGDAGAKGEKGHPGLIGLI---GPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASG 1453
Query: 205 PAMPGINMGPGAGRPWP-NPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADST 261
P PG GP G P P P A G GPPG GPPG I P P
Sbjct: 1454 PIGPG---GP-PGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMP 1509
Query: 262 NSS------DNIYTMINPVPPGGSRSNFPMGPGSDG 291
+ + +P GG+ PGS G
Sbjct: 1510 KKTRRSVDGSRLMQEDEAIPTGGA-------PGSPG 1538
Score = 36.6 bits (83), Expect = 0.036
Identities = 49/191 (25%), Positives = 63/191 (32%), Gaps = 35/191 (18%)
Query: 179 PRGM-GPMG-PGPQNYGSGMRPPPNSLGPA----MPGINMGPGAGRPWPNPNSANSIPYS 232
PRG+ G G P G + PP GPA PGI PG P +P
Sbjct: 378 PRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG---PVGDPGER------ 428
Query: 233 SSSPGTYVGPPGGGGPPGTPIMPSPADST-------NSSDNIYTMINPVPPGGSRSNFPM 285
GPPG G PG+ P P ++ S + +++
Sbjct: 429 --------GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ 480
Query: 286 G----PGSDGPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDDGEL 340
G GPMG G P GS G G+ L P G++ PPG G
Sbjct: 481 ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA 540
Query: 341 GGNFLHSFQND 351
G + D
Sbjct: 541 GADGARGMPGD 551
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 73.9 bits (180), Expect = 2e-13
Identities = 83/253 (32%), Positives = 99/253 (39%), Gaps = 40/253 (15%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ-------PLLPNSM 158
P G G P PPGF P G +P + G P G PG P LP +
Sbjct: 82 PGKPGPRGPPGPPGF------PGKPGMGKPGLH-GQPGPAGPPGFSRMGKAGPPGLPGKV 134
Query: 159 DPTRQ---QGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPP--PNSLG-PAMPGIN 211
P Q +G P + G PP GP G PGP SG+ P P + G P PG
Sbjct: 135 GPPGQPGLRGEPGIRGDQGLRGPP---GPPGLPGP----SGITIPGKPGAQGVPGPPGFQ 187
Query: 212 MGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD-STNSSDNIYT 269
PG G P P + PG G PG GG PG P +P PA D +
Sbjct: 188 GEPGPQGEPGPPGDRGLKGDNGVGQPGL-PGAPGQGGAPGPPGLPGPAGLGKPGLDGL-- 244
Query: 270 MINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGIS 328
P PG + P G PG G G +G P ++G +G GLP P SG
Sbjct: 245 ---PGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG-VGVPGAAGLP--GPQGPSGAK 298
Query: 329 NPPGTPRDDGELG 341
PGT G +G
Sbjct: 299 GEPGTRGPPGLIG 311
Score = 67.8 bits (164), Expect = 1e-11
Identities = 78/255 (30%), Positives = 95/255 (37%), Gaps = 32/255 (12%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 157
P P IP G G P PPGF P G P PP G + GV QP LP +
Sbjct: 164 PGPSGITIPGKPGAQGVPGPPGFQG---EPGPQGEPGPPGDRGLKGDNGV--GQPGLPGA 218
Query: 158 MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGS-----GMRPPPNSLGPAMP---- 208
G P + G P P PG + G R P ++GP P
Sbjct: 219 PGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVD 278
Query: 209 GINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPP--GTPIMPSPADSTNSSDN 266
G+ + AG P P S + PGT GPPG GP G P +P P +
Sbjct: 279 GVGVPGAAGLPGPQGPSG-----AKGEPGTR-GPPGLIGPTGYGMPGLPGPKGDRGPAGV 332
Query: 267 IYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISG 326
+ + PG PG GP G+GG P + GS G G P P +G
Sbjct: 333 PGLLGDRGEPGEDGE-----PGEQGPQ-GLGG--PPGLPGSAGLPGRRGPP--GPKGEAG 382
Query: 327 ISNPPGTPRDDGELG 341
PPG P G+ G
Sbjct: 383 PGGPPGVPGIRGDQG 397
Score = 63.9 bits (154), Expect = 2e-10
Identities = 75/251 (29%), Positives = 85/251 (33%), Gaps = 34/251 (13%)
Query: 105 IPPNDGMPGGPIPPGFFQP--FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTR 162
+P G G P PPG P P G P P G P GVPG + P ++ P
Sbjct: 215 LPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGE-PGAVGPKG 273
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP---AMPGINMGPGAGRP 219
G +G P GP GP G R PP +GP MPG+ G P
Sbjct: 274 PPGVDGVGVPGAAGLP----GPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGP 329
Query: 220 WPNPN--SANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
P P PG GP G GGPPG +P A PPG
Sbjct: 330 AGVPGLLGDRGEPGEDGEPGEQ-GPQGLGGPPG---LPGSAGLPGRRG---------PPG 376
Query: 278 GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------KNSPNNISGISNP 330
P GP G G G P + G G GLP P G +
Sbjct: 377 PKGEAGPGGP--PGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGR 434
Query: 331 PGTPRDDGELG 341
PG P G LG
Sbjct: 435 PGGPGVAGALG 445
Score = 63.9 bits (154), Expect = 2e-10
Identities = 74/248 (29%), Positives = 97/248 (39%), Gaps = 43/248 (17%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG PPG + P G P P G++ P GVPG LL + +P + G P
Sbjct: 299 GEPGTRGPPGL----IGPTGYGMPGLPGPKGDRGPAGVPG---LLGDRGEPG-EDGEPGE 350
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYG-SGMRPPPNSLG-------PAMPGI--NMGPG--AG 217
G P+G+G P + G G R PP G P +PGI + GP AG
Sbjct: 351 QG-------PQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAG 403
Query: 218 RPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
+P +P PG + GPPG GP G P + + + PG
Sbjct: 404 KP--------GVPGERGLPGAH-GPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPG 454
Query: 278 GSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP---KNSPNNISGISNPPGT 333
P G PG GP G +G P + G G + G P + +G + PPG
Sbjct: 455 QPGLRGPSGIPGLQGPAGPIG---PQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGV 511
Query: 334 PRDDGELG 341
P G G
Sbjct: 512 PGSPGITG 519
Score = 63.2 bits (152), Expect = 4e-10
Identities = 81/281 (28%), Positives = 99/281 (35%), Gaps = 56/281 (19%)
Query: 98 PSPVLGNIPPNDGMPGGPI------PPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ 151
P P P DG+PG P PPG P P G PP G GVPG
Sbjct: 231 PGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG----VGVPGAA 286
Query: 152 PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPA-MPGI 210
LP P+ +G P G PP +GP G G G+ P GPA +PG+
Sbjct: 287 G-LPGPQGPSGAKGEPGTRG------PPGLIGPTGYGM----PGLPGPKGDRGPAGVPGL 335
Query: 211 --------------NMGP-GAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMP 255
GP G G P P SA +P PG G G GGPPG P +
Sbjct: 336 LGDRGEPGEDGEPGEQGPQGLGGPPGLPGSA-GLPGRRGPPGP-KGEAGPGGPPGVPGIR 393
Query: 256 SPADSTN--------SSDNIYTMINPVPPGGSR-----SNFPMGPGSDGPMGGMGGMEPH 302
+ + P P G + + P GPG G +G G +
Sbjct: 394 GDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLP 453
Query: 303 HMNGSLGSGDIDGLPKNS----PNNISGISNPPGTPRDDGE 339
G G I GL + P + G+ PG P GE
Sbjct: 454 GQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGE 494
Score = 58.2 bits (139), Expect = 1e-08
Identities = 67/241 (27%), Positives = 79/241 (32%), Gaps = 54/241 (22%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPR---PPIRMGNQPPGGVPGTQPLLPNSMDPTR 162
P DG PG P G P P AG P PP G PGG PG P + P+
Sbjct: 342 PGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGV-PGIRGDQGPSG 400
Query: 163 QQGHPNMGGSMQRMNPPRGMGPMGP-----------GPQNYGS----------------- 194
G P + G GP GP GP G+
Sbjct: 401 LAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRG 460
Query: 195 -----GMRPPPNSLGP-------AMPGINMGPGAGRPW-PNPNSANSIPYSSSSPGTYVG 241
G++ P +GP PG+ PG GR P P SPG G
Sbjct: 461 PSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGI-TG 519
Query: 242 PPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEP 301
PPG GPPG P P D T + P G +G G P G+G +
Sbjct: 520 PPGPPGPPGPPGAPGAFDETG-------IAGLHLPNGGVEGAVLGKGGK-PQFGLGELSA 571
Query: 302 H 302
H
Sbjct: 572 H 572
Score = 35.4 bits (80), Expect = 0.080
Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 240 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGM 299
VGPP G MP P + P PPG P GP GMG
Sbjct: 52 VGPPFREGKGQYLEMPLPLLPMDLKGE------PGPPGKPGPRGPPGPPGFPGKPGMGKP 105
Query: 300 EPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
H G G + K P + G PPG P GE G
Sbjct: 106 GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPG 147
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 73.6 bits (179), Expect = 3e-13
Identities = 84/281 (29%), Positives = 107/281 (38%), Gaps = 37/281 (13%)
Query: 98 PSPV-LGNIPPNDGMPG-----GPI-PPGFFQPFMSPRYAGGPRPPIRMGNQPP-GGVPG 149
P PV L + G+PG GP+ PPG P+ G + P + +P G+PG
Sbjct: 679 PGPVGLQGLRGEVGLPGVKGDKGPMGPPG-------PKGDQGEKGPRGLTGEPGMRGLPG 731
Query: 150 T--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG--- 204
+P +M P GH G P GP GP G+ P G
Sbjct: 732 AVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPG 791
Query: 205 -PAMPGINMGPGA-GRPWPNPNSAN-SIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADST 261
P PGI PGA G+ + S+ ++P PG +GPPG PPG P PA
Sbjct: 792 TPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGA-MGPPG---PPGAPGPAGPAGLP 847
Query: 262 NSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG--GMGGMEPHHMNGSLGSGDIDGLPKN 319
+ + P PPG P PG GP G G G P GS S N
Sbjct: 848 GHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLS--------N 899
Query: 320 SPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSMTMS 360
S +SG PPG P G+ G Q + P + S
Sbjct: 900 SETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTS 940
Score = 70.1 bits (170), Expect = 3e-12
Identities = 84/265 (31%), Positives = 97/265 (36%), Gaps = 56/265 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
GMPG PPG +G P P G Q P G+PGT P + G P
Sbjct: 761 GMPGIRGPPG---------PSGDPGKPGLTGPQGPQGLPGT----PGRPGIKGEPGAPGK 807
Query: 170 -----GGSMQRM----NPPRGMGPMGPGPQNYGSGMRPPPNSLGPA-MPG----INMGPG 215
G SM + PP MGP PGP P GPA +PG +N+
Sbjct: 808 IVTSEGSSMLTVPGPPGPPGAMGP--PGPPG-------APGPAGPAGLPGHQEVLNLQGP 858
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGT--PIMPSPADSTNSSDNIYTMINP 273
G P P SIP GPPG GPPG P P P S S+ + P
Sbjct: 859 PGPPGPRGPPGPSIP----------GPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPP 908
Query: 274 VPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDID-GLPKNSPNNISGISNPP 331
PPG P GP G GP G G + G SG GL P G P
Sbjct: 909 GPPG------PPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPK 962
Query: 332 GTPRDDGELGGNFLHSFQNDNYSPS 356
G D G G + S ++ S S
Sbjct: 963 GDKGDPGVPGALGIPSGPSEGGSSS 987
Score = 64.7 bits (156), Expect = 1e-10
Identities = 70/252 (27%), Positives = 87/252 (34%), Gaps = 49/252 (19%)
Query: 111 MPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLL-----PNSMDPTRQQG 165
+PG P PPG P P PP G P G+PG Q +L P P G
Sbjct: 819 VPGPPGPPGAMGP---------PGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPG 869
Query: 166 HPNMGGSMQRMNPPRGMGPMGPGP-----QNYGSGMRPPPNSLGPAMPGINMGPGAGRPW 220
P++ G PP P PGP N + + PP GP P + GP R
Sbjct: 870 -PSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGH 928
Query: 221 PNPNSANSIPYSSSSPG--TYVGPPGGGGP------------PGTPIMPSPADSTNSSDN 266
S SS GPPG GP PG +PS SS
Sbjct: 929 QGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSST 988
Query: 267 IYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISG 326
+Y P PPG PG G + G +++ + S I +SG
Sbjct: 989 MYVSGPPGPPGP--------PGPPGSISSSGQEIQQYISEYMQSDSIRSY-------LSG 1033
Query: 327 ISNPPGTPRDDG 338
+ PPG P G
Sbjct: 1034 VQGPPGPPGPPG 1045
Score = 63.2 bits (152), Expect = 4e-10
Identities = 61/206 (29%), Positives = 75/206 (36%), Gaps = 42/206 (20%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 157
P P PP +G+PG P PPG F +G P PP PPG
Sbjct: 873 PGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPP-----GPPG------------ 915
Query: 158 MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAG 217
P QG P G P G G ++G ++ PP GP GP
Sbjct: 916 --PKGDQGPPGPRGHQGEQGLP---GFSTSGSSSFGLNLQGPPGPPGP------QGPKGD 964
Query: 218 RPWPNPNSANSIPYSSSSPGT----YV-GPPGGGGPPGTPIMPSPADSTNSSDNIYTMIN 272
+ P A IP S G+ YV GPPG GPPG P ++S I I+
Sbjct: 965 KGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPG-----PPGSISSSGQEIQQYIS 1019
Query: 273 PVPPGGSRSNFPMG----PGSDGPMG 294
S ++ G PG GP G
Sbjct: 1020 EYMQSDSIRSYLSGVQGPPGPPGPPG 1045
Score = 47.8 bits (112), Expect = 2e-05
Identities = 59/192 (30%), Positives = 69/192 (35%), Gaps = 17/192 (8%)
Query: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLG-PAMPGIN 211
L S P G P G P GP+G PGPQ G + S+G P M G
Sbjct: 565 LRGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQ----GPKGQKGSVGDPGMEG-P 619
Query: 212 MGPGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADSTNSSDNIYT 269
MG GR P + P S G G PG GPPG P P S + S
Sbjct: 620 MGQ-RGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGS-SGSPGPQG 677
Query: 270 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 329
PV G R + PG G G MG P G G + G P + G+
Sbjct: 678 PPGPVGLQGLRGEVGL-PGVKGDKGPMGPPGPKGDQGEKGPRGLTGEP-----GMRGLPG 731
Query: 330 PPGTPRDDGELG 341
G P G +G
Sbjct: 732 AVGEPGAKGAMG 743
Score = 37.7 bits (86), Expect = 0.016
Identities = 48/189 (25%), Positives = 68/189 (35%), Gaps = 33/189 (17%)
Query: 182 MGPMGP----GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS---- 233
MGP GP G GS + L + G P P +P +S
Sbjct: 1105 MGPRGPPGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYEEL 1164
Query: 234 ------SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP 287
S VGPPG GPPG +P S+ S +++ + ++ + P
Sbjct: 1165 LSLLRGSEFRGIVGPPGPPGPPG---IPGNVWSSISVEDLSSYLHT-------AGLSFIP 1214
Query: 288 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPK---------NSPNNISGISNPPGTPRDDG 338
G GP G G P ++G+L + + SP+ S I PPG P G
Sbjct: 1215 GPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQG 1274
Query: 339 ELGGNFLHS 347
G + L S
Sbjct: 1275 PPGDSRLLS 1283
Score = 35.8 bits (81), Expect = 0.061
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 40/204 (19%)
Query: 110 GMPGGPIPPGF----FQPFMS----PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT 161
G+PG P PPG ++ +S + G PP G P G+PG + +S+
Sbjct: 1146 GLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPP---GPPGPPGIPGN---VWSSISVE 1199
Query: 162 RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWP 221
+ + G PP GP PGP+ GP PG++ G A
Sbjct: 1200 DLSSYLHTAGLSFIPGPPGPPGP--PGPR-------------GP--PGVS-GALATYAAE 1241
Query: 222 NPNSANS--IPY-SSSSPGTYV----GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV 274
N +S S I Y +S +++ GPPG GPPG + S S + + + + V
Sbjct: 1242 NSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSHSSSV 1301
Query: 275 PPGGS-RSNFPMGPGSDGPMGGMG 297
G S S+ G G G +G G
Sbjct: 1302 RRGSSYSSSMSTGGGGAGSLGAGG 1325
Score = 35.4 bits (80), Expect = 0.080
Identities = 54/216 (25%), Positives = 75/216 (34%), Gaps = 35/216 (16%)
Query: 128 RYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 187
+Y GPR P P G G LL + M S + P GP G
Sbjct: 1102 QYLMGPRGP-----PGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGL 1156
Query: 188 GPQNY--------GS---GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSP 236
+Y GS G+ PP GP PGI G W + + + Y ++
Sbjct: 1157 PGTSYEELLSLLRGSEFRGIVGPPGPPGP--PGI-----PGNVWSSISVEDLSSYLHTAG 1209
Query: 237 GTYV-------GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGS 289
+++ GPPG GPPG + + NS +I+ + RS PG
Sbjct: 1210 LSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGP 1269
Query: 290 DGPMGGMG-----GMEPHHMNGSLGSGDIDGLPKNS 320
GP G G + H GS S + + S
Sbjct: 1270 PGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGS 1305
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 72.4 bits (176), Expect = 6e-13
Identities = 78/277 (28%), Positives = 94/277 (33%), Gaps = 43/277 (15%)
Query: 76 RRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPP--NDGMPGGPIPPGFFQPFMSPRYAGGP 133
RR+TC H+ A PS P G PG P PPG P G
Sbjct: 248 RRETC---------HELPARITPSQTTDERGPPGEQGPPGPPGPPGV------PGIDGID 292
Query: 134 RPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYG 193
G++ P G PG P G P G+ + P G GP
Sbjct: 293 ------GDRGPKGPPG----------PPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGS 336
Query: 194 SGMRPPPNSLGPAMPGINMGPGAGRPWP-NPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 252
G + P +PG PG G P P P +P G VG PG GPPG P
Sbjct: 337 IGSKGQKGE--PGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGP-VGDPGRRGPPGPP 393
Query: 253 IMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG--- 309
P P + D N PPG RS +P PG G G G + G G
Sbjct: 394 GPPGPRGTIGFHDGDPLCPNACPPG--RSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEG 451
Query: 310 -SGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFL 345
G++ + P G+ G D GE G L
Sbjct: 452 DQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGL 488
Score = 61.2 bits (147), Expect = 1e-09
Identities = 84/325 (25%), Positives = 100/325 (30%), Gaps = 102/325 (31%)
Query: 107 PNDGMPGGPIPPGF---------FQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 157
P G+PG P PPG P P G P PP G + G PL PN+
Sbjct: 355 PGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNA 414
Query: 158 MDPTR-----------------------QQGHPNMGGSMQRMNPPRGMGPMG-------- 186
P R +QGH G + GP G
Sbjct: 415 CPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGIT 474
Query: 187 -----------------PGPQNY-----GSGMRPPPNSLGP----------AMPGINMGP 214
PGPQ G R PP GP +PG+ GP
Sbjct: 475 GIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLP-GP 533
Query: 215 GAGRPWPNPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPS---------PADSTNS 263
P + + IP + G GPPG G G P +P ST +
Sbjct: 534 KGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGA 593
Query: 264 SDNIYTMINPV------PPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
M N PPG P G PGS G +G +G GSLGS + GL
Sbjct: 594 PGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGL 653
Query: 317 PKNSPNNISGISNPPGTPRDDGELG 341
P PPG P G+ G
Sbjct: 654 P-----------GPPGLPGMKGDRG 667
Score = 52.8 bits (125), Expect = 5e-07
Identities = 70/262 (26%), Positives = 85/262 (32%), Gaps = 66/262 (25%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G G P PG SP G P PP G + GV G +P + ++G
Sbjct: 631 GPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVG-EPGPKGEQGASGEEGEAGE 689
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G + + P GP G G+R P S G +PG+ GP R P P
Sbjct: 690 RGELGDIGLP---GPKGSAGNPGEPGLRGPEGSRG--LPGVE-GP---RGPPGPRGVQGE 740
Query: 230 PYSSSSPGTYVGPP---------------------------------GGGGPPGTPIMPS 256
++ PG GPP G G PG P P
Sbjct: 741 QGATGLPGVQ-GPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPG 799
Query: 257 PADSTNSSDNIYTMINPVPPGGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGD 312
P P PPG + MG PG GP G +G P G LG
Sbjct: 800 P---------------PGPPGENGFPGQMGIRGLPGIKGPPGALGLRGP---KGDLGEKG 841
Query: 313 IDGLPKNSPNNISGISNPPGTP 334
G P PN + G PG P
Sbjct: 842 ERGPPGRGPNGLPGAIGLPGDP 863
Score = 50.1 bits (118), Expect = 3e-06
Identities = 74/269 (27%), Positives = 88/269 (32%), Gaps = 43/269 (15%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQ 164
+P G PG P PPG P G P G + G PG + NS P QQ
Sbjct: 551 MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPG-QQ 609
Query: 165 GHPNMGGSMQRMNPPRGMGPMGPGPQNYGS-GMRPPPNSLG-PAMPGINMGPG------- 215
G P G P G +GP GS G+ SLG P +PG+ PG
Sbjct: 610 GPPGEVGPRGPQGLPGSRGELGP----VGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGD 665
Query: 216 ---AGRPWPNPNSANSIPYSSSSPGTYVG------PPGGGGPPGTPIMPSPADSTNSSDN 266
G P P S + +G P G G PG P + P S
Sbjct: 666 RGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGV 725
Query: 267 IYTMINPVPPGGSRSNFPMG-PGSDGPMGG-----------MGGMEPH--HMNGSLGSGD 312
P P G G PG GP G M ++ H M SL
Sbjct: 726 EGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKR-- 783
Query: 313 IDGLPKNSPNNISGISNPPGTPRDDGELG 341
P + + G PPG P GE G
Sbjct: 784 ----PDSGATGLPGRPGPPGPPGPPGENG 808
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/200 (29%), Positives = 69/200 (34%), Gaps = 50/200 (25%)
Query: 105 IPPNDGMPGGPIPPGFFQPFMSPRYAG--GPRPPIR----MGNQPPGGVPGTQPLLPNSM 158
+P G G P PG P S G GPR P G Q G+PG Q P
Sbjct: 698 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG--PPGR 755
Query: 159 DPTRQ----------QGH----------PNMG--GSMQRMNPPRGMGPMG----PGPQNY 192
PT Q Q H P+ G G R PP GP G PG
Sbjct: 756 APTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGI 815
Query: 193 GS--GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT------------ 238
G++ PP +LG P ++G G P N +P + PG
Sbjct: 816 RGLPGIKGPPGALGLRGPKGDLGE-KGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRD 874
Query: 239 -YVGPPGGGGPPGTPIMPSP 257
GPPG G PG P P P
Sbjct: 875 GERGPPGVAGIPGVPGPPGP 894
Score = 42.4 bits (98), Expect = 7e-04
Identities = 47/156 (30%), Positives = 53/156 (33%), Gaps = 42/156 (26%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPG--GVPGTQPLLPNSMDPTRQQGHP 167
G+PG P PPG PP PPG G PG + +G P
Sbjct: 790 GLPGRPGPPG---------------PP-----GPPGENGFPGQMGI----------RGLP 819
Query: 168 NMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSAN 227
+ G PP +G GP G R PP +PG PG P P N
Sbjct: 820 GIKG------PPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGD--PGPASYGRN 871
Query: 228 SIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADST 261
PG G PG GPPG P PA T
Sbjct: 872 GRDGERGPPGVAGIPGVPGPPGPPGLPGFCEPASCT 907
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 71.6 bits (174), Expect = 1e-12
Identities = 78/262 (29%), Positives = 94/262 (35%), Gaps = 25/262 (9%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL------ 153
P G P + G+PG PG P + G P G Q P G+PGT
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA 733
Query: 154 -----LPNSMDPTRQQGHPNMGGSMQRMNP--PRG----MGPMGPGPQNYGSGMRPPPNS 202
P + P QG P G+ P RG GP G ++ G G+ P
Sbjct: 734 SGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGP 793
Query: 203 LGPAMPGINMGPG-AGRPWPNPNS-ANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
GPA G N G G P P ++ A P G GP G GPPG P
Sbjct: 794 PGPA--GANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGPPGADGQPGAKGE 850
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN 319
+ P P G S + P GP G GP G G P G G+ G P +
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 910
Query: 320 SPNNISGISNPPGTPRDDGELG 341
+ N G PPG DG G
Sbjct: 911 NGN--PGPPGPPGPSGKDGPKG 930
Score = 70.9 bits (172), Expect = 2e-12
Identities = 80/263 (30%), Positives = 96/263 (36%), Gaps = 42/263 (15%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGN---QPPGGVPGTQPLLPNSMDPTR 162
P ++G PG P PPG G PP R G Q P G PG + P P+
Sbjct: 908 PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGE-PGDDGPSG 966
Query: 163 QQGHPNMGG--------SMQRMNPPRGM----GPMG-PGPQNY--GSGMRPPPNSLGP-- 205
+G P G + RG GP G PG Q SG R PP +GP
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 206 -----AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
PG PGA P P + A + G VG PG GPPG+ P PA
Sbjct: 1027 LTGPAGEPGREGSPGADGP-PGRDGAAGVKGDRGETGA-VGAPGAPGPPGS---PGPAGP 1081
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN 319
T + G + + PMGP G G G G P G G GL +
Sbjct: 1082 TGKQGD---------RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1132
Query: 320 SP-NNISGISNPPGTPRDDGELG 341
+ G+ PPG D G G
Sbjct: 1133 RGFTGLQGLPGPPGPSGDQGASG 1155
Score = 70.1 bits (170), Expect = 3e-12
Identities = 82/279 (29%), Positives = 99/279 (35%), Gaps = 61/279 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-------------PPG-----GVPGTQ 151
G PG P PG P M PR G P PP + G+ PPG G PGT
Sbjct: 225 GNPGEPGEPGVSGP-MGPR--GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT- 280
Query: 152 PLLPNSMDPTRQQGHPNMGGSMQRMNPPR------------GMGPMGP----------GP 189
P LP +G+P + G+ P GPMGP GP
Sbjct: 281 PGLPGVKG---HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 337
Query: 190 QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP- 248
+G R GPA P +GP G +P A + P GP G GP
Sbjct: 338 AG-AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK----GEAGPTGARGPEGAQGPR 392
Query: 249 --PGTPIMPSPADSTNS--SDNIYTMINP--VPPGGSRSNFPMGPGSDGPMGGMGGMEPH 302
PGTP P PA ++ + +D I P FP G GP G G + P
Sbjct: 393 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 452
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G + P G + P G P GE G
Sbjct: 453 GQTGEPGIAGFKG--EQGPKGEPGPAGPQGAPGPAGEEG 489
Score = 66.6 bits (161), Expect = 3e-11
Identities = 81/279 (29%), Positives = 94/279 (33%), Gaps = 56/279 (20%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAG-------------------GPRPPIRMGNQP-PG 145
P N G PG P PPG P + +A GP P+ P P
Sbjct: 158 PGNPGPPGPPGPPG--PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 215
Query: 146 GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYG-----SGMRPP 199
G PG Q N +P G P + G M PP GP G PG +G R P
Sbjct: 216 GAPGPQGFQGNPGEP----GEPGVSGPMGPRGPP---GPPGKPGDDGEAGKPGKAGERGP 268
Query: 200 PNSLG----PAMPGINMGPGAGRPWPNPNSAN------SIPYSSSSPGTYVGPPGGGGPP 249
P G P PG+ G R +P + A + S SPG G PG GP
Sbjct: 269 PGPQGARGFPGTPGL-PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN-GSPGPMGPR 326
Query: 250 GTP-----IMPSPADSTNSSDNIYTMINPVPPGGSRS--NFPMGPGSDGPMGGMGGMEPH 302
G P P+ A +D P P G FP PG+ G G G P
Sbjct: 327 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G P P SG G P G G
Sbjct: 387 GAQGPRGEPGTPGSP--GPAGASGNPGTDGIPGAKGSAG 423
Score = 66.6 bits (161), Expect = 3e-11
Identities = 74/276 (26%), Positives = 87/276 (31%), Gaps = 45/276 (16%)
Query: 96 AAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
+A +P + P G G P P G P G P G Q P G PG
Sbjct: 421 SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG------ 474
Query: 156 NSMDPTRQQGHPNMGGSMQRMNP---PRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINM 212
P QG P G + P G+GP+GP + G R P G A P
Sbjct: 475 ----PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 530
Query: 213 GPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGP---------PGTPIMPSPA 258
G P AN P PG G PG GP PG P P
Sbjct: 531 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 590
Query: 259 DSTNSSDNIYTMINPVPPGGSRSNFPMG-------------PGSDGPMGGMGGMEPHHMN 305
+ M P P G + G PG DG G G P
Sbjct: 591 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG---PPGPA 647
Query: 306 GSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G P P+ G+ PPG P + G+ G
Sbjct: 648 GPAGERGEQGAP--GPSGFQGLPGPPGPPGEGGKPG 681
Score = 61.2 bits (147), Expect = 1e-09
Identities = 68/246 (27%), Positives = 84/246 (34%), Gaps = 49/246 (19%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG P G P +P G P PP G Q G PG P G P
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPP---GPQGARGQPGVMGF----PGPKGANGEPGK 616
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P G G + +G PP GPA G + P P+ +
Sbjct: 617 AGEKGLPGAPGLRGLPGKDGETGAAG---PPGPAGPA------GERGEQGAPGPSGFQGL 667
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP----------VPPGGS 279
P GPPG GG PG +P A + ++ P PG
Sbjct: 668 PGPP-------GPPGEGGKPGDQGVPGEAGAPG-------LVGPRGERGFPGERGSPGAQ 713
Query: 280 RSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
P G PG+DGP G G P G+ G + G+P +GI+ P G
Sbjct: 714 GLQGPRGLPGTPGTDGPKGASGPAGP---PGAQGPPGLQGMP--GERGAAGIAGPKGDRG 768
Query: 336 DDGELG 341
D GE G
Sbjct: 769 DVGEKG 774
Score = 60.5 bits (145), Expect = 2e-09
Identities = 73/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGP-----------RPPIRMGNQPPGGVPGTQPLLPN 156
NDG PG PPG P P + G P R P G Q P G PGT P
Sbjct: 346 NDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP--EGAQGPRGEPGT----PG 399
Query: 157 SMDPTRQQGHP---------NMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPA 206
S P G+P G+ P GP G PGPQ +G P G
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGE- 457
Query: 207 MPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
PGI G P P A P + P G G G PG
Sbjct: 458 -PGIAGFKGEQGPKGEPGPAG--PQGAPGPAGEEGKRGARGEPGG--------------- 499
Query: 267 IYTMINPVPPGGSRS-----NFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNS 320
+ P+ P G R FP G GP G G P + G G+ G P +
Sbjct: 500 ----VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG 555
Query: 321 PNNISGISNPPGTPRDDGELG 341
G++ PG G++G
Sbjct: 556 LPGARGLTGRPGDAGPQGKVG 576
Score = 60.5 bits (145), Expect = 2e-09
Identities = 66/238 (27%), Positives = 78/238 (32%), Gaps = 32/238 (13%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G G P P G +P G PP G P G G QP Q+G
Sbjct: 804 GEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKGDAGA 862
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P GP G G + PP + G PG AGR P ++ N
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG--FPG-----AAGRVGPPGSNGNPG 915
Query: 230 PYSSSSPGTYVGPPGGGG---PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG 286
P P GP G G PPG P + P P G +
Sbjct: 916 PPGPPGPSGKDGPKGARGDSGPPGRAGEPG-------------LQGPAGPPGEKGE---- 958
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELGGN 343
PG DGP G G P + G G I GLP + G+ P G P G G +
Sbjct: 959 PGDDGPSGAEGPPGPQGLAGQRG---IVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 1013
Score = 59.7 bits (143), Expect = 4e-09
Identities = 72/245 (29%), Positives = 88/245 (35%), Gaps = 49/245 (20%)
Query: 110 GMPGGPIPPGFFQPF-----MSPRYAGGPRPPIRMGNQPPGGVPGTQ-PLLPN-----SM 158
G PG P PPG P R G + P MG P G G Q P P +
Sbjct: 1065 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP--MGPSGPAGARGIQGPQGPRGDKGEAG 1122
Query: 159 DPTRQ--QGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPA-MPGINMGPG 215
+P + +GH G PP G G SG R PP +GP+ G N PG
Sbjct: 1123 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPG 1182
Query: 216 A-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV 274
G P P S + P GPPG GPPG P P
Sbjct: 1183 PIGPPGPRGRSGETGP---------AGPPGNPGPPGPP-------------------GPP 1214
Query: 275 PPGGSRSNFP-MGPGSDGPMGGMGGMEPHHMNGSLGSGD--IDGLPKNSPNNISGISNPP 331
PG S F +GP GP + M G L D +D K+ N I I +P
Sbjct: 1215 GPGIDMSAFAGLGPREKGP-DPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPE 1273
Query: 332 GTPRD 336
G+ ++
Sbjct: 1274 GSRKN 1278
Score = 57.0 bits (136), Expect = 3e-08
Identities = 71/246 (28%), Positives = 86/246 (34%), Gaps = 24/246 (9%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G G PG + + P+ GP+ P G Q P G G + + P + G P
Sbjct: 101 GPKGQKGEPGDIKDIVGPKGPPGPQGPA--GEQGPRGDRGDKGE-KGAPGPRGRDGEPGT 157
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPP-PNSLGPAMPGINMGP-----------GAG 217
G+ PP GP G G N+ + M G A G+ GP AG
Sbjct: 158 PGNPGPPGPPGPPGPPGLG-GNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG 216
Query: 218 RPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
P P N P PG GP G GPPG P P D P P
Sbjct: 217 APGPQGFQGN--PGEPGEPGV-SGPMGPRGPPGPPGKPGD-DGEAGKPGKAGERGPPGPQ 272
Query: 278 GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP--NNISGISNPPGTPR 335
G+R FP PG G G G G G+ + G SP N G P G P
Sbjct: 273 GAR-GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG-ESGSPGENGSPGPMGPRGLPG 330
Query: 336 DDGELG 341
+ G G
Sbjct: 331 ERGRTG 336
Score = 53.1 bits (126), Expect = 4e-07
Identities = 76/304 (25%), Positives = 88/304 (28%), Gaps = 83/304 (27%)
Query: 107 PNDGMPGGPI-------------------------PPGFFQPFMSPRYAGGPRPPIRMGN 141
P P GP+ P G P P G P P GN
Sbjct: 350 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN 409
Query: 142 QPPGGVPGTQ-----------PLLP------------NSMDPTRQQGHPNMGGSMQRMNP 178
G+PG + P P + P Q G P + G P
Sbjct: 410 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGP 469
Query: 179 PRGMGPMG----PGP--QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPN---SANSI 229
GP G PGP + G R P +GP P G R +P +
Sbjct: 470 KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGA 529
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPS----------PADSTNSSDNIYTMINPV-PPGG 278
P P GP G G PG P P P D+ + P PG
Sbjct: 530 P-GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQG-----KVGPSGAPGE 583
Query: 279 SRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDD 337
P GP G+ G G MG P NG G GLP G G P D
Sbjct: 584 DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP--------GAPGLRGLPGKD 635
Query: 338 GELG 341
GE G
Sbjct: 636 GETG 639
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 71.6 bits (174), Expect = 1e-12
Identities = 78/262 (29%), Positives = 94/262 (35%), Gaps = 25/262 (9%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL------ 153
P G P + G+PG PG P + G P G Q P G+PGT
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA 664
Query: 154 -----LPNSMDPTRQQGHPNMGGSMQRMNP--PRG----MGPMGPGPQNYGSGMRPPPNS 202
P + P QG P G+ P RG GP G ++ G G+ P
Sbjct: 665 SGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGP 724
Query: 203 LGPAMPGINMGPG-AGRPWPNPNS-ANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
GPA G N G G P P ++ A P G GP G GPPG P
Sbjct: 725 PGPA--GANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGPPGADGQPGAKGE 781
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN 319
+ P P G S + P GP G GP G G P G G+ G P +
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 841
Query: 320 SPNNISGISNPPGTPRDDGELG 341
+ N G PPG DG G
Sbjct: 842 NGN--PGPPGPPGPSGKDGPKG 861
Score = 70.9 bits (172), Expect = 2e-12
Identities = 80/263 (30%), Positives = 96/263 (36%), Gaps = 42/263 (15%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGN---QPPGGVPGTQPLLPNSMDPTR 162
P ++G PG P PPG G PP R G Q P G PG + P P+
Sbjct: 839 PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGE-PGDDGPSG 897
Query: 163 QQGHPNMGG--------SMQRMNPPRGM----GPMG-PGPQNY--GSGMRPPPNSLGP-- 205
+G P G + RG GP G PG Q SG R PP +GP
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 206 -----AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
PG PGA P P + A + G VG PG GPPG+ P PA
Sbjct: 958 LTGPAGEPGREGSPGADGP-PGRDGAAGVKGDRGETGA-VGAPGAPGPPGS---PGPAGP 1012
Query: 261 TNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN 319
T + G + + PMGP G G G G P G G GL +
Sbjct: 1013 TGKQGD---------RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1063
Query: 320 SP-NNISGISNPPGTPRDDGELG 341
+ G+ PPG D G G
Sbjct: 1064 RGFTGLQGLPGPPGPSGDQGASG 1086
Score = 70.1 bits (170), Expect = 3e-12
Identities = 82/279 (29%), Positives = 99/279 (35%), Gaps = 61/279 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-------------PPG-----GVPGTQ 151
G PG P PG P M PR G P PP + G+ PPG G PGT
Sbjct: 156 GNPGEPGEPGVSGP-MGPR--GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT- 211
Query: 152 PLLPNSMDPTRQQGHPNMGGSMQRMNPPR------------GMGPMGP----------GP 189
P LP +G+P + G+ P GPMGP GP
Sbjct: 212 PGLPGVKG---HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGP 268
Query: 190 QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP- 248
+G R GPA P +GP G +P A + P GP G GP
Sbjct: 269 AG-AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK----GEAGPTGARGPEGAQGPR 323
Query: 249 --PGTPIMPSPADSTNS--SDNIYTMINP--VPPGGSRSNFPMGPGSDGPMGGMGGMEPH 302
PGTP P PA ++ + +D I P FP G GP G G + P
Sbjct: 324 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 383
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G + P G + P G P GE G
Sbjct: 384 GQTGEPGIAGFKG--EQGPKGEPGPAGPQGAPGPAGEEG 420
Score = 66.6 bits (161), Expect = 3e-11
Identities = 81/279 (29%), Positives = 94/279 (33%), Gaps = 56/279 (20%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAG-------------------GPRPPIRMGNQP-PG 145
P N G PG P PPG P + +A GP P+ P P
Sbjct: 89 PGNPGPPGPPGPPG--PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 146
Query: 146 GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYG-----SGMRPP 199
G PG Q N +P G P + G M PP GP G PG +G R P
Sbjct: 147 GAPGPQGFQGNPGEP----GEPGVSGPMGPRGPP---GPPGKPGDDGEAGKPGKAGERGP 199
Query: 200 PNSLG----PAMPGINMGPGAGRPWPNPNSAN------SIPYSSSSPGTYVGPPGGGGPP 249
P G P PG+ G R +P + A + S SPG G PG GP
Sbjct: 200 PGPQGARGFPGTPGL-PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN-GSPGPMGPR 257
Query: 250 GTP-----IMPSPADSTNSSDNIYTMINPVPPGGSRS--NFPMGPGSDGPMGGMGGMEPH 302
G P P+ A +D P P G FP PG+ G G G P
Sbjct: 258 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Query: 303 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G P P SG G P G G
Sbjct: 318 GAQGPRGEPGTPGSP--GPAGASGNPGTDGIPGAKGSAG 354
Score = 66.6 bits (161), Expect = 3e-11
Identities = 74/276 (26%), Positives = 87/276 (31%), Gaps = 45/276 (16%)
Query: 96 AAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 155
+A +P + P G G P P G P G P G Q P G PG
Sbjct: 352 SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG------ 405
Query: 156 NSMDPTRQQGHPNMGGSMQRMNP---PRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINM 212
P QG P G + P G+GP+GP + G R P G A P
Sbjct: 406 ----PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 461
Query: 213 GPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGP---------PGTPIMPSPA 258
G P AN P PG G PG GP PG P P
Sbjct: 462 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 521
Query: 259 DSTNSSDNIYTMINPVPPGGSRSNFPMG-------------PGSDGPMGGMGGMEPHHMN 305
+ M P P G + G PG DG G G P
Sbjct: 522 GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG---PPGPA 578
Query: 306 GSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G G G P P+ G+ PPG P + G+ G
Sbjct: 579 GPAGERGEQGAP--GPSGFQGLPGPPGPPGEGGKPG 612
Score = 61.2 bits (147), Expect = 1e-09
Identities = 68/246 (27%), Positives = 84/246 (34%), Gaps = 49/246 (19%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G PG P G P +P G P PP G Q G PG P G P
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPP---GPQGARGQPGVMGF----PGPKGANGEPGK 547
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P G G + +G PP GPA G + P P+ +
Sbjct: 548 AGEKGLPGAPGLRGLPGKDGETGAAG---PPGPAGPA------GERGEQGAPGPSGFQGL 598
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP----------VPPGGS 279
P GPPG GG PG +P A + ++ P PG
Sbjct: 599 PGPP-------GPPGEGGKPGDQGVPGEAGAPG-------LVGPRGERGFPGERGSPGAQ 644
Query: 280 RSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 335
P G PG+DGP G G P G+ G + G+P +GI+ P G
Sbjct: 645 GLQGPRGLPGTPGTDGPKGASGPAGP---PGAQGPPGLQGMP--GERGAAGIAGPKGDRG 699
Query: 336 DDGELG 341
D GE G
Sbjct: 700 DVGEKG 705
Score = 60.5 bits (145), Expect = 2e-09
Identities = 73/261 (27%), Positives = 87/261 (33%), Gaps = 57/261 (21%)
Query: 108 NDGMPGGPIPPGFFQPFMSPRYAGGP-----------RPPIRMGNQPPGGVPGTQPLLPN 156
NDG PG PPG P P + G P R P G Q P G PGT P
Sbjct: 277 NDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP--EGAQGPRGEPGT----PG 330
Query: 157 SMDPTRQQGHP---------NMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPA 206
S P G+P G+ P GP G PGPQ +G P G
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGE- 388
Query: 207 MPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 266
PGI G P P A P + P G G G PG
Sbjct: 389 -PGIAGFKGEQGPKGEPGPAG--PQGAPGPAGEEGKRGARGEPGG--------------- 430
Query: 267 IYTMINPVPPGGSRS-----NFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNS 320
+ P+ P G R FP G GP G G P + G G+ G P +
Sbjct: 431 ----VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG 486
Query: 321 PNNISGISNPPGTPRDDGELG 341
G++ PG G++G
Sbjct: 487 LPGARGLTGRPGDAGPQGKVG 507
Score = 60.5 bits (145), Expect = 2e-09
Identities = 66/238 (27%), Positives = 78/238 (32%), Gaps = 32/238 (13%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G G P P G +P G PP G P G G QP Q+G
Sbjct: 735 GEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG-QPGAKGEQGEAGQKGDAGA 793
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 229
G P GP G G + PP + G PG AGR P ++ N
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG--FPG-----AAGRVGPPGSNGNPG 846
Query: 230 PYSSSSPGTYVGPPGGGG---PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG 286
P P GP G G PPG P + P P G +
Sbjct: 847 PPGPPGPSGKDGPKGARGDSGPPGRAGEPG-------------LQGPAGPPGEKGE---- 889
Query: 287 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELGGN 343
PG DGP G G P + G G I GLP + G+ P G P G G +
Sbjct: 890 PGDDGPSGAEGPPGPQGLAGQRG---IVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 944
Score = 59.7 bits (143), Expect = 4e-09
Identities = 72/245 (29%), Positives = 88/245 (35%), Gaps = 49/245 (20%)
Query: 110 GMPGGPIPPGFFQPF-----MSPRYAGGPRPPIRMGNQPPGGVPGTQ-PLLPN-----SM 158
G PG P PPG P R G + P MG P G G Q P P +
Sbjct: 996 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP--MGPSGPAGARGIQGPQGPRGDKGEAG 1053
Query: 159 DPTRQ--QGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPA-MPGINMGPG 215
+P + +GH G PP G G SG R PP +GP+ G N PG
Sbjct: 1054 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPG 1113
Query: 216 A-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV 274
G P P S + P GPPG GPPG P P
Sbjct: 1114 PIGPPGPRGRSGETGP---------AGPPGNPGPPGPP-------------------GPP 1145
Query: 275 PPGGSRSNFP-MGPGSDGPMGGMGGMEPHHMNGSLGSGD--IDGLPKNSPNNISGISNPP 331
PG S F +GP GP + M G L D +D K+ N I I +P
Sbjct: 1146 GPGIDMSAFAGLGPREKGP-DPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPE 1204
Query: 332 GTPRD 336
G+ ++
Sbjct: 1205 GSRKN 1209
Score = 57.0 bits (136), Expect = 3e-08
Identities = 71/246 (28%), Positives = 86/246 (34%), Gaps = 24/246 (9%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNM 169
G G PG + + P+ GP+ P G Q P G G + + P + G P
Sbjct: 32 GPKGQKGEPGDIKDIVGPKGPPGPQGPA--GEQGPRGDRGDKGE-KGAPGPRGRDGEPGT 88
Query: 170 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPP-PNSLGPAMPGINMGP-----------GAG 217
G+ PP GP G G N+ + M G A G+ GP AG
Sbjct: 89 PGNPGPPGPPGPPGPPGLG-GNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG 147
Query: 218 RPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 277
P P N P PG GP G GPPG P P D P P
Sbjct: 148 APGPQGFQGN--PGEPGEPGV-SGPMGPRGPPGPPGKPGD-DGEAGKPGKAGERGPPGPQ 203
Query: 278 GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP--NNISGISNPPGTPR 335
G+R FP PG G G G G G+ + G SP N G P G P
Sbjct: 204 GAR-GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG-ESGSPGENGSPGPMGPRGLPG 261
Query: 336 DDGELG 341
+ G G
Sbjct: 262 ERGRTG 267
Score = 55.1 bits (131), Expect = 1e-07
Identities = 54/170 (31%), Positives = 61/170 (35%), Gaps = 17/170 (10%)
Query: 180 RGMGPMG----PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSS 235
R GP G PG G + PP GP P GP R A
Sbjct: 29 RQPGPKGQKGEPGDIKDIVGPKGPP---GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGE 85
Query: 236 PGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNF---PMGP-GSDG 291
PGT PG GPPG P P P + GG++ PMGP G G
Sbjct: 86 PGT----PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRG 141
Query: 292 PMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
P G G P G+ G G+ + P G PPG P DDGE G
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGV--SGPMGPRGPPGPPGKPGDDGEAG 189
Score = 53.1 bits (126), Expect = 4e-07
Identities = 76/304 (25%), Positives = 88/304 (28%), Gaps = 83/304 (27%)
Query: 107 PNDGMPGGPI-------------------------PPGFFQPFMSPRYAGGPRPPIRMGN 141
P P GP+ P G P P G P P GN
Sbjct: 281 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN 340
Query: 142 QPPGGVPGTQ-----------PLLP------------NSMDPTRQQGHPNMGGSMQRMNP 178
G+PG + P P + P Q G P + G P
Sbjct: 341 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGP 400
Query: 179 PRGMGPMG----PGP--QNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPN---SANSI 229
GP G PGP + G R P +GP P G R +P +
Sbjct: 401 KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGA 460
Query: 230 PYSSSSPGTYVGPPGGGGPPGTPIMPS----------PADSTNSSDNIYTMINPV-PPGG 278
P P GP G G PG P P P D+ + P PG
Sbjct: 461 P-GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQG-----KVGPSGAPGE 514
Query: 279 SRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDD 337
P GP G+ G G MG P NG G GLP G G P D
Sbjct: 515 DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP--------GAPGLRGLPGKD 566
Query: 338 GELG 341
GE G
Sbjct: 567 GETG 570
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 71.6 bits (174), Expect = 1e-12
Identities = 78/255 (30%), Positives = 93/255 (36%), Gaps = 30/255 (11%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGT--QPLLPN 156
SP L DG PG P G P AG P P G+ P G+ G P +P
Sbjct: 415 SPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPG 474
Query: 157 SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPG 215
+G P G + PP G GP G PP +G PG PG
Sbjct: 475 FKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGD---PGTVGPPGPVGERGAPGNRGFPG 531
Query: 216 A-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV 274
+ G P P P SS P G PG G PG +P T NP
Sbjct: 532 SDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPG---LPGARGLTG---------NPG 579
Query: 275 PPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLG-------SGDIDGLPKNSPNNISG 326
G P+G PG DG G G + GS+G SGD G P + N +G
Sbjct: 580 VQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGD-PGKPGEAGN--AG 636
Query: 327 ISNPPGTPRDDGELG 341
+ G P DGE+G
Sbjct: 637 VPGQRGAPGKDGEVG 651
Score = 69.3 bits (168), Expect = 5e-12
Identities = 74/247 (29%), Positives = 88/247 (35%), Gaps = 52/247 (21%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNS 157
P +G + P GMPG G P +P G P + G P G+PG+
Sbjct: 328 PMGAMGPLGPR-GMPG---ERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSS------ 377
Query: 158 MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGA 216
G P G P GP GP Q +G P S G P G + PGA
Sbjct: 378 -------GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGA 430
Query: 217 GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 276
P + SPGT GPPG GPPG+ P P ST P
Sbjct: 431 KGP-------------TGSPGTS-GPPGSAGPPGS---PGPQGSTG-------------P 460
Query: 277 GGSRS--NFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTP 334
G R P PG G G G PH + G +G +G K P G PPG
Sbjct: 461 QGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEG--KRGPRGDPGTVGPPGPV 518
Query: 335 RDDGELG 341
+ G G
Sbjct: 519 GERGAPG 525
Score = 66.2 bits (160), Expect = 4e-11
Identities = 75/273 (27%), Positives = 93/273 (34%), Gaps = 52/273 (19%)
Query: 110 GMPGGPIPPGFFQPF--MSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 167
G PG PPG P P+ GPR P + +P GVPG P + P HP
Sbjct: 129 GRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEP--GVPGQ----PGAPGPPGHPSHP 182
Query: 168 NMGGSMQRMNP------------------PRGMGPMGP-GPQNY-----GSGMRPPPNSL 203
G + + P +GP+GP GPQ G+G PP
Sbjct: 183 GPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEP 242
Query: 204 GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPSPADST 261
G P +G P + P + +PG + G PG G PG P +P
Sbjct: 243 GDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPG-LKGH 301
Query: 262 NSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN-- 319
+ V GS+ G GPMG MG + P M G G G P
Sbjct: 302 RGHKGLEGPKGEVGAPGSKGE----AGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRG 357
Query: 320 -----------SPNNISGISNPPGTPRDDGELG 341
P I G S PG P GE G
Sbjct: 358 AHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAG 390
Score = 61.2 bits (147), Expect = 1e-09
Identities = 74/265 (27%), Positives = 88/265 (33%), Gaps = 57/265 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMG--NQP-----PG----------------- 145
G PG P G P +P G P PP +G QP PG
Sbjct: 576 GNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNA 635
Query: 146 GVPGTQ--PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNS 202
GVPG + P + P+ G P + G PP G G PGP PP
Sbjct: 636 GVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPG------PPGEG 689
Query: 203 LGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSP 257
P G+ PGA P P P PG G GG GP G P P
Sbjct: 690 GKPGDQGVPGDPGAVGPL-GPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGP 748
Query: 258 ADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 316
+ + + PPG G G+ GP G GG+ G+ G+ GL
Sbjct: 749 SGTPGDTG---------PPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGL 799
Query: 317 PKNSPNNISGISNPPGTPRDDGELG 341
P G PPG GE G
Sbjct: 800 P--------GPLGPPGPAGPTGEKG 816
Score = 60.8 bits (146), Expect = 2e-09
Identities = 80/282 (28%), Positives = 98/282 (34%), Gaps = 50/282 (17%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ----------PL-L 154
P G PG PPG AG P P G G GT PL
Sbjct: 746 PGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGP 805
Query: 155 PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP-AMPGINMG 213
P PT ++G P G + PP G G +N +G GP PG+
Sbjct: 806 PGPAGPTGEKGEPGPRGLV---GPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGE 862
Query: 214 PG-------AGRPWPN-------PNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM---PS 256
PG AG P P P+ N +P GT GPPG G PG+ P
Sbjct: 863 PGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQ-GPPGATGFPGSAGRVGPPG 921
Query: 257 PADSTNSSDNIYTMINPVPPG-----GSRSNF--------PMGPGSDGPMG--GMGGME- 300
PA + + + PPG GS P GPG G G G G +
Sbjct: 922 PAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDG 981
Query: 301 PHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELG 341
P G+ G I G+P + + G+ P GTP G G
Sbjct: 982 PPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTG 1023
Score = 58.2 bits (139), Expect = 1e-08
Identities = 74/259 (28%), Positives = 85/259 (32%), Gaps = 26/259 (10%)
Query: 95 AAAPSPV--LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP 152
A AP P LG P +G PG PG AG P P G+ G PG
Sbjct: 923 AGAPGPAGPLGE-PGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDG 981
Query: 153 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP----GPQNYGSGMRPP-----PNSL 203
P T Q+G M G P GP G GP PP P S
Sbjct: 982 P-PGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSN 1040
Query: 204 GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP-IMPSPADSTN 262
GP GP P + A PG G PG G PGTP + +P D+
Sbjct: 1041 GPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGP-AGLPGSQGAPGTPGPVGAPGDAGQ 1099
Query: 263 SSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 322
D P+ P G + PG GP G G G G GL
Sbjct: 1100 RGDP--GSRGPIGPPGRAGKRGL-PGPQGPRGDKGDHGDRGDRGQKGHRGFTGL------ 1150
Query: 323 NISGISNPPGTPRDDGELG 341
G+ PPG + G G
Sbjct: 1151 --QGLPGPPGPNGEQGSAG 1167
Score = 55.8 bits (133), Expect = 6e-08
Identities = 66/232 (28%), Positives = 78/232 (33%), Gaps = 52/232 (22%)
Query: 117 PPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRM 176
PPG P S + GG G + G PG P++ T +G P G
Sbjct: 88 PPGECCPVCS-QTPGGGNTNFGRGRKGQKGEPGLVPVV------TGIRGRPGPAG----- 135
Query: 177 NPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMP-GINMGPGAGRPWPNPNSANSIPYSSSS 235
PP GP G R P GP P GI+ PG +P
Sbjct: 136 -PPGSQGPRGE---------RGPKGRPGPRGPQGIDGEPG-------------VP----- 167
Query: 236 PGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGG 295
G PG GPPG P P P + M G S + PGS GP+G
Sbjct: 168 -----GQPGAPGPPGHPSHPGPDGLSRPFSA--QMAGLDEKSGLGSQVGLMPGSVGPVGP 220
Query: 296 MGGMEPHHMNGSLGSGDIDGLPKN----SPNNISGISNPPGTPRDDGELGGN 343
G G G G P + P G PPG P +DGE G N
Sbjct: 221 RGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRN 272
Score = 51.6 bits (122), Expect = 1e-06
Identities = 53/168 (31%), Positives = 63/168 (37%), Gaps = 26/168 (15%)
Query: 100 PVLGNIPPNDGMPGGPIP---PGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPN 156
P +P + G PG P P PG P G PP R G + G+PG Q +
Sbjct: 1073 PGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKR---GLPGPQGPRGD 1129
Query: 157 SMD-----PTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRPPPNSLGPAM 207
D Q+GH G PP G G PGP G R PP +GP+
Sbjct: 1130 KGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGP----FGPRGPPGPVGPS- 1184
Query: 208 PGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMP 255
G PG P P S+ + GPPG GPPG P P
Sbjct: 1185 -GKEGNPGPLGPIGPPGVRGSVGEAGPE-----GPPGEPGPPGPPGPP 1226
Score = 47.4 bits (111), Expect = 2e-05
Identities = 50/162 (30%), Positives = 62/162 (38%), Gaps = 19/162 (11%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL--LPNSMDPTRQ 163
P G+PG PG P +P AG P G++ P G PG LP P
Sbjct: 1073 PGPAGLPGSQGAPGTPGPVGAPGDAGQRGDP---GSRGPIGPPGRAGKRGLPGPQGPRGD 1129
Query: 164 QG-HPNMGGSMQRMNPPRGM-------GPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG 215
+G H + G Q+ + RG GP GP + +G+ P GP P +GP
Sbjct: 1130 KGDHGDRGDRGQKGH--RGFTGLQGLPGPPGPNGEQGSAGI---PGPFGPRGPPGPVGPS 1184
Query: 216 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSP 257
P P P S G GP G G PG P P P
Sbjct: 1185 GKEGNPGPLGPIGPPGVRGSVGE-AGPEGPPGEPGPPGPPGP 1225
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 71.2 bits (173), Expect = 1e-12
Identities = 79/265 (29%), Positives = 91/265 (34%), Gaps = 58/265 (21%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQP---PGGVPGTQ--PLLPNSMDPTR-- 162
G PG P PPGF SP G P P G++ P G+PG+ P P P
Sbjct: 1159 GFPGPPGPPGFPGKVGSP---GPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLD 1215
Query: 163 ----QQGHPNMGGSMQRMNPPRGMGPMG----------PGPQNYGSGMRPPPNSLGPAMP 208
+ G P + G PP MGP G PGP+ G PP S G P
Sbjct: 1216 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKG-DCGKPGPPGSTG--RP 1272
Query: 209 GINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPA---------- 258
G PGA P P GPPG GPPG P P PA
Sbjct: 1273 GAEGEPGAMGPQGRP-----------------GPPGHVGPPGPPGQPGPAGISAVGLKGD 1315
Query: 259 -DSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG-SGDIDGL 316
+T P PPG P PG+DG G G G G GD
Sbjct: 1316 RGATGERGLAGLPGQPGPPG--HPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAA 1373
Query: 317 PKNSPNNISGISNPPGTPRDDGELG 341
+ G + PG P G +G
Sbjct: 1374 GQKGQAGEKGRAGMPGGPGKSGSMG 1398
Score = 63.2 bits (152), Expect = 4e-10
Identities = 73/273 (26%), Positives = 93/273 (34%), Gaps = 51/273 (18%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTR-QQ 164
P + G PG PG P G P PP +G P G PG + + R
Sbjct: 1266 PGSTGRPGAEGEPGAMGP------QGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGAT 1319
Query: 165 GHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGA------- 216
G + G + PP GP G + +G PP G PG PGA
Sbjct: 1320 GERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQA 1379
Query: 217 ------GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMP----SPADSTNSSD- 265
G P S + P P G PG GP G+P +P S D N +
Sbjct: 1380 GEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEI 1439
Query: 266 ------NIYTMINP-VPPGGSRSNFPM----------GPGSDGPMGGMGGMEPHHMNGSL 308
I M + + SR FPM PG DG G G + G +
Sbjct: 1440 KRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQI 1499
Query: 309 GSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G GLP G+ PGT + G++G
Sbjct: 1500 GREGRQGLP--------GVRGLPGTKGEKGDIG 1524
Score = 61.2 bits (147), Expect = 1e-09
Identities = 85/277 (30%), Positives = 95/277 (34%), Gaps = 48/277 (17%)
Query: 106 PPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQ-------------PPG--GVPGT 150
PP GM G P PPG P P G P P G + PPG G PG
Sbjct: 1037 PP--GMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGA 1094
Query: 151 --QPLLP------NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-GPQNYGSGMRPPPN 201
P LP ++G P GS PP GP G GPQ SG +
Sbjct: 1095 TGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQG-NSGEKGDQG 1153
Query: 202 SLG-PAMPGINMGPG----AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPS 256
G P PG PG G P P A P G PG GPPG P +
Sbjct: 1154 FQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPS---GLPGSPGPPGPPGIQG 1210
Query: 257 PA--DSTNSSDNIYTMI-NPVPPGGSRSNFPMG-------PGSDGPMGGMGGMEPHHMNG 306
PA D + D + +P P G P G PG GP G G P G
Sbjct: 1211 PAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTG 1270
Query: 307 SLGSGDIDGL--PKNSPNNISGISNPPGTPRDDGELG 341
G+ G P+ P G PPG P G G
Sbjct: 1271 RPGAEGEPGAMGPQGRPGP-PGHVGPPGPPGQPGPAG 1306
Score = 55.8 bits (133), Expect = 6e-08
Identities = 71/271 (26%), Positives = 89/271 (32%), Gaps = 46/271 (16%)
Query: 100 PVLGNIPPNDGMPGG----------PIPPGFFQPFMSPRYAGGPRPP---IRMGNQPPGG 146
P L +P N+G+PG PI + G P + G + G
Sbjct: 921 PGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQG 980
Query: 147 VPGTQPLLPN------SMDPTR--------QQGHPNMGGSMQRMNPPRGMGPMGPGPQNY 192
+PG P L N S++ R +G P GS PP G G
Sbjct: 981 IPGV-PGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPG 1039
Query: 193 GSGMRPPPNSLG-PAMPGINMGPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPG 250
G PP +G P PG PG G + + P G PG GPPG
Sbjct: 1040 MRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPG 1099
Query: 251 TPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGS 310
P + T S+ P PPG PG GP G G P +G G
Sbjct: 1100 LPGIKGERGYTGSAGE---KGEPGPPGSEGL-----PGPPGPAGPRGERGPQGNSGEKGD 1151
Query: 311 GDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G P G PPG P G++G
Sbjct: 1152 QGFQGQP--------GFPGPPGPPGFPGKVG 1174
Score = 54.3 bits (129), Expect = 2e-07
Identities = 72/272 (26%), Positives = 86/272 (31%), Gaps = 43/272 (15%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPRPPIR-------MGNQPPGGVPGTQ----------- 151
G PG P PPG P +P GGP P G + PGG PG
Sbjct: 450 GPPGLPGPPGIGLPG-TPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCE 508
Query: 152 --PLLPNSM-----------------DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNY 192
P LP DP +G P + G P G Q+
Sbjct: 509 VCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHL 568
Query: 193 GS--GMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPP 249
S G S G +PG+ G G N + P S P VGP G G
Sbjct: 569 VSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAK 628
Query: 250 GTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG 309
G P P PA S ++ + P P G P G G G G G G G
Sbjct: 629 GEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAG 688
Query: 310 SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
+ G P + G+S PG G G
Sbjct: 689 NPGDPGTPGTTGR--PGLSGEPGVQGPAGPKG 718
Score = 53.9 bits (128), Expect = 2e-07
Identities = 83/319 (26%), Positives = 99/319 (31%), Gaps = 91/319 (28%)
Query: 98 PSPVLGNIPPND----------GMPGGPIPPGFFQPFMSPRYA--------------GGP 133
P P L N+ D G G P PPGF P + G P
Sbjct: 634 PCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDP 693
Query: 134 RPPIRMGNQPPGGVPGTQ-PLLPNSMDPTRQQGHPNMGGSMQRM-NPPRGMGPMGP-GPQ 190
P G G PG Q P P P++ G++ M P GP G GP+
Sbjct: 694 GTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPE 753
Query: 191 NYGSGMRPPPNSLGPAMPGINMGPGA----GRPWPNPNSANSIPYSSSSPGTYV----GP 242
G +P P +PG+ PG G P P PG V G
Sbjct: 754 GVGRPGKPGQ----PGLPGVQGPPGLKGVQGEPGP--------------PGRGVQGPQGE 795
Query: 243 PGGGGPPGTPIMPSP--------ADSTNSSDNIYTMINPVPPGGSRSNFPMG-------- 286
PG G PG +P P S + PV P G+ + P G
Sbjct: 796 PGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQT 855
Query: 287 -----PGSDGPMGGMGGMEPHHMN----GSLGSGDIDGLP-----------KNSPNNISG 326
PG GP G G EP + G L + G P P I G
Sbjct: 856 GLRGTPGEKGPRGEKG--EPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPG 913
Query: 327 ISNPPGTPRDDGELGGNFL 345
PPG P G G N L
Sbjct: 914 PPGPPGVPGLQGVPGNNGL 932
Score = 50.8 bits (120), Expect = 2e-06
Identities = 70/268 (26%), Positives = 89/268 (33%), Gaps = 43/268 (16%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT 161
L +P G PG P PPG +P + AG PP + G P G G P +
Sbjct: 1324 LAGLPGQPGPPGHPGPPG--EP-GTDGAAGKEGPPGKQGFYGPPGPKGD----PGAAGQK 1376
Query: 162 RQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPA-MPGINMGPGAGRP 219
Q G G MGP+G PGP +G R P + GP+ PG+ PG+
Sbjct: 1377 GQAGEKGRAGMPGGPGKSGSMGPVGPPGP----AGERGHPGAPGPSGSPGLPGVPGSMGD 1432
Query: 220 WPNPN----------------------SANSIPYSSSSPGTYVGPPGGGGPPGTPIMPS- 256
N + S P ++ GPPG G PG P P
Sbjct: 1433 MVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGS 1492
Query: 257 ---PADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDI 313
P + + PG +G G G G G P G G G +
Sbjct: 1493 PGLPGQIGREGRQGLPGVRGL-PGTKGEKGDIGIGIAGENGLPG---PPGPQGPPGYGKM 1548
Query: 314 DGLPKNSPNNISGISNPPGTPRDDGELG 341
I GI PPG G+ G
Sbjct: 1549 GATGPMGQQGIPGIPGPPGPMGQPGKAG 1576
Score = 42.7 bits (99), Expect = 5e-04
Identities = 63/244 (25%), Positives = 83/244 (34%), Gaps = 35/244 (14%)
Query: 110 GMPGGPIPPGFFQPFMSPRYAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPN 168
GMPG P +M + GP+ PP G P GVPG Q + N+ P G P
Sbjct: 888 GMPGAP------GLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLP----GQPG 937
Query: 169 MGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG----------PAMPGINMGPGAGR 218
+ + + + + G + G R P L P +PG++
Sbjct: 938 LTAELGSLPIEQHLLKSICG--DCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFL 995
Query: 219 PWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG 278
P + + +S VG PG GPPG P +P PPG
Sbjct: 996 SLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRG------SPGPPGP 1049
Query: 279 -SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDD 337
FP GS G G G + G G G P G + PPG P
Sbjct: 1050 IGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQP-----GYPGATGPPGLPGIK 1104
Query: 338 GELG 341
GE G
Sbjct: 1105 GERG 1108
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/215 (26%), Positives = 74/215 (34%), Gaps = 24/215 (11%)
Query: 140 GNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPP 199
G + GG+ G +P + G + G + P +GP G + G+ P
Sbjct: 402 GEKGDGGIKG----VPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGP 457
Query: 200 PNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 259
P P PG PG G P P + +S PG G PG G G P P
Sbjct: 458 PGIGLPGTPG---DPG-GPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCPTL 513
Query: 260 STNSSDNIYTMINPVPPGGSRSNFPM--GPGSDGPMGGMGGMEP----------HHMNGS 307
+ + P P G P PG G G G EP H+ S
Sbjct: 514 PEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKG--EPCLSCSSVVGAQHLVSS 571
Query: 308 LG-SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G SGD+ G P + G + PG + G G
Sbjct: 572 TGASGDV-GSPGFGLPGLPGRAGVPGLKGEKGNFG 605
Score = 38.1 bits (87), Expect = 0.012
Identities = 39/135 (28%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 131 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQ 190
G P PP + G G PG+ P LP + +QG P + G +G +G +
Sbjct: 1473 GRPGPPGKDGAPGRPGAPGS-PGLPGQIGREGRQGLPGVRGLPGTKGEKGDIG-IGIAGE 1530
Query: 191 NYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPG 250
N G+ PP GP PG G+ ++ P G PG GPPG
Sbjct: 1531 N---GLPGPPGPQGP--------PGYGK------------MGATGPMGQQGIPGIPGPPG 1567
Query: 251 TPIMPSPADSTNSSD 265
P A N SD
Sbjct: 1568 PMGQPGKAGHCNPSD 1582
Score = 37.0 bits (84), Expect = 0.027
Identities = 47/173 (27%), Positives = 55/173 (31%), Gaps = 27/173 (15%)
Query: 183 GPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYS---------S 233
GP G ++ G P S G G G + P + P
Sbjct: 375 GPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQK 434
Query: 234 SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 293
PG +VGP G G PG P +P P I P PGG P GP D
Sbjct: 435 GDPG-FVGPEGLAGEPGPPGLPGP-------PGIGLPGTPGDPGG-----PPGPKGDKGS 481
Query: 294 GGMGGME-PHHMNGSLG----SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
G+ G E P G G GD + P PG P GE G
Sbjct: 482 SGIPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPG 534
Score = 35.8 bits (81), Expect = 0.061
Identities = 29/101 (28%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 241 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGME 300
GP GG G G P P + N I+P P G G G G +
Sbjct: 334 GPKGGKGERGLPGPPGSKGEKGARGNDCVRISPDAP------LQCAEGPKGEKGESGALG 387
Query: 301 PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 341
P + GS G G GI PG P DG G
Sbjct: 388 PSGLPGSTGEKGQKG-----EKGDGGIKGVPGKPGRDGRPG 423
Score = 33.9 bits (76), Expect = 0.23
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 97 APSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPN 156
A +P P DG PG P P G P P ++G + G+PG + LP
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAP------------GSPGLPGQIGREGRQGLPGVRG-LPG 1515
Query: 157 SMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-GPQNYGS-GMRPPPNSLGPAMPGINMGP 214
+ ++G +G + + P GP GP GP YG G P G +PGI P
Sbjct: 1516 TKG---EKGDIGIGIAGENGLP----GPPGPQGPPGYGKMGATGPMGQQG--IPGI---P 1563
Query: 215 GAGRPWPNPNSA 226
G P P A
Sbjct: 1564 GPPGPMGQPGKA 1575
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,514,745
Number of Sequences: 37866
Number of extensions: 1890379
Number of successful extensions: 16511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 1167
Number of HSP's that attempted gapping in prelim test: 6611
Number of HSP's gapped (non-prelim): 4275
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.