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Search of human proteins with 58000465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58000465 ripply2 protein [Homo sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58000465 ripply2 protein [Homo sapiens] 273 3e-74
gi|156523052 ripply1 homolog [Homo sapiens] 86 6e-18
gi|9506557 Down syndrome critical region protein 6 [Homo sapiens] 65 1e-11
gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens] 34 0.036
gi|24497609 nucleoporin 62kDa [Homo sapiens] 30 0.51
gi|24497607 nucleoporin 62kDa [Homo sapiens] 30 0.51
gi|24497605 nucleoporin 62kDa [Homo sapiens] 30 0.51
gi|24497603 nucleoporin 62kDa [Homo sapiens] 30 0.51
gi|80861486 granule cell antiserum positive 14 [Homo sapiens] 30 0.67
gi|223468634 envoplakin-like [Homo sapiens] 29 0.88
gi|33342268 hypothetical protein LOC91300 [Homo sapiens] 29 0.88
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|146134388 YLP motif containing 1 [Homo sapiens] 29 1.1
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 28 1.5
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 28 1.5
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 28 1.5
gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo ... 28 2.0
gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo ... 28 2.0
gi|5031759 homeobox A11 [Homo sapiens] 28 2.6
gi|4504831 potassium voltage-gated channel, subfamily H, member ... 28 2.6
gi|27437001 potassium voltage-gated channel, subfamily H, member... 28 2.6
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 28 2.6
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 28 2.6
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 28 2.6
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 28 2.6
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 28 2.6
gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens] 27 3.3
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 27 3.3
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ... 27 4.4
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 27 4.4
>gi|58000465 ripply2 protein [Homo sapiens]
Length = 128
Score = 273 bits (698), Expect = 3e-74
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMP 60
MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMP
Sbjct: 1 MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMP 60
Query: 61 DGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEAEALLKNFPIQATISFYEDSDSEDE 120
DGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEAEALLKNFPIQATISFYEDSDSEDE
Sbjct: 61 DGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEAEALLKNFPIQATISFYEDSDSEDE 120
Query: 121 IEDLTCEN 128
IEDLTCEN
Sbjct: 121 IEDLTCEN 128
>gi|156523052 ripply1 homolog [Homo sapiens]
Length = 151
Score = 86.3 bits (212), Expect = 6e-18
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 37 WRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEA 96
WRPW+ + + + G + +F HPVRLFWPKS+ +DYLY
Sbjct: 57 WRPWLSSTNDSPRQM-RKLVDLAAGGATAAEVTKAESKFHHPVRLFWPKSRSFDYLYSAG 115
Query: 97 EALLKNFPIQATISFYEDSDSEDEIED 123
E LL+NFP+QATI+ YEDSDSE+E ED
Sbjct: 116 EILLQNFPVQATINLYEDSDSEEEEED 142
>gi|9506557 Down syndrome critical region protein 6 [Homo sapiens]
Length = 190
Score = 65.5 bits (158), Expect = 1e-11
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 37 WRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEA 96
WRPW+ G E E P T S + F+HPVR++ P SK +YL
Sbjct: 39 WRPWIQTPGDAELTRTGRPLE--PRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSG 96
Query: 97 EALLKNFPIQATISFYEDSDSEDEIE 122
E +L +FP+QATI FY+D +E E
Sbjct: 97 EQVLASFPVQATIDFYDDESTESASE 122
>gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens]
Length = 1133
Score = 33.9 bits (76), Expect = 0.036
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 4 AGGAEGTESGAAACAATDGPTRRA-GADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDG 62
AG A SG+ +T G A G SG RP V G T NHAA A+P G
Sbjct: 450 AGTAGHPPSGSQPLTSTQGLEHAAAGGSSGTTARERPCVRPGVSGSPVTQNHAASALPTG 509
Query: 63 -PGMTAASGKL 72
P A G L
Sbjct: 510 SPKRGTAPGDL 520
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 0.51
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
G A GT + + A T + + +G+A +P AG P++ A A+ PG
Sbjct: 262 GAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAG------IPSNTAAAVTAPPG 315
Query: 65 MTAASG 70
AA+G
Sbjct: 316 PGAAAG 321
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 0.51
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
G A GT + + A T + + +G+A +P AG P++ A A+ PG
Sbjct: 262 GAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAG------IPSNTAAAVTAPPG 315
Query: 65 MTAASG 70
AA+G
Sbjct: 316 PGAAAG 321
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 0.51
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
G A GT + + A T + + +G+A +P AG P++ A A+ PG
Sbjct: 262 GAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAG------IPSNTAAAVTAPPG 315
Query: 65 MTAASG 70
AA+G
Sbjct: 316 PGAAAG 321
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 0.51
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
G A GT + + A T + + +G+A +P AG P++ A A+ PG
Sbjct: 262 GAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAG------IPSNTAAAVTAPPG 315
Query: 65 MTAASG 70
AA+G
Sbjct: 316 PGAAAG 321
>gi|80861486 granule cell antiserum positive 14 [Homo sapiens]
Length = 834
Score = 29.6 bits (65), Expect = 0.67
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 13/47 (27%)
Query: 32 GYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGKLYQFRHP 78
GY GF RP+ AGGKK A+P+GPG+T+ G Y+ HP
Sbjct: 287 GY-GFNRPYA-AGGKKL---------ALPNGPGVTSTLG--YRMVHP 320
>gi|223468634 envoplakin-like [Homo sapiens]
Length = 301
Score = 29.3 bits (64), Expect = 0.88
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAG 35
GGA GT+ GA A D RRA A+ G AG
Sbjct: 128 GGAGGTDRGAQHRAEGDQRPRRAAAEPGGAG 158
>gi|33342268 hypothetical protein LOC91300 [Homo sapiens]
Length = 268
Score = 29.3 bits (64), Expect = 0.88
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 1 MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNH-----A 55
+E GG G E G A A+ G A ++ Y W +++ G+++E +
Sbjct: 83 LETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGR 142
Query: 56 AEAMPDGPG 64
++A GPG
Sbjct: 143 SKARRRGPG 151
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETP 52
GG G E G RR GA AG PW +A ++ ++ P
Sbjct: 109 GGGRGWEGGGLGARRAVTAARRGGASRPLAG--EPWREAARRRPQQCP 154
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 28.9 bits (63), Expect = 1.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAA---EAMPD 61
GG +G++ AA + GP RRAG+ R + G +E P A P
Sbjct: 1095 GGLQGSQDRGAAGSRERGPPRRAGSQE------RGPLRRAGSRERIPPRRAGSRERGPPR 1148
Query: 62 GPG 64
GPG
Sbjct: 1149 GPG 1151
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 28.5 bits (62), Expect = 1.5
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
GG+ G + GA AAT G AG+ +G G GG E E A + G
Sbjct: 20 GGSAGEQEGAMV-AATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEG 78
Query: 65 MTAASGKLYQFRHPVRLFWPKSK--CYDYLYQEAEAL---LKNFPIQAT-----ISFYED 114
G L W +K DY + E + LK PI +++
Sbjct: 79 KMFIGG----------LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 128
Query: 115 SDSEDEIED 123
S+S D++ D
Sbjct: 129 SESVDKVMD 137
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 28.5 bits (62), Expect = 1.5
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
GG+ G + GA AAT G AG+ +G G GG E E A + G
Sbjct: 20 GGSAGEQEGAMV-AATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEG 78
Query: 65 MTAASGKLYQFRHPVRLFWPKSK--CYDYLYQEAEAL---LKNFPIQAT-----ISFYED 114
G L W +K DY + E + LK PI +++
Sbjct: 79 KMFIGG----------LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 128
Query: 115 SDSEDEIED 123
S+S D++ D
Sbjct: 129 SESVDKVMD 137
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 28.5 bits (62), Expect = 1.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 7 AEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEE----ETPNHAAEAMPDG 62
A+G ++GA + G ++ P + G EE + + +AEA PDG
Sbjct: 94 ADGEDAGAESNEEAPGEPSAGSSEEA------PGEPSAGSSEEAPGERSTSASAEAAPDG 147
Query: 63 PGMTAASGKL 72
P + A+G L
Sbjct: 148 PALEEAAGPL 157
>gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
sapiens]
Length = 552
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 23 PTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPD--GPGMTAASGKLYQFRHP 78
P + G G W +++EE P+H A A P GPG + +Q + P
Sbjct: 282 PLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAP 339
>gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo
sapiens]
Length = 552
Score = 28.1 bits (61), Expect = 2.0
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 23 PTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPD--GPGMTAASGKLYQFRHP 78
P + G G W +++EE P+H A A P GPG + +Q + P
Sbjct: 282 PLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAP 339
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
G T + AAA AA G + +DSG G R A +KE ++ + G
Sbjct: 168 GPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSG 227
Query: 65 MT 66
T
Sbjct: 228 HT 229
>gi|4504831 potassium voltage-gated channel, subfamily H, member 1
isoform 2 [Homo sapiens]
Length = 962
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 22 GPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGK 71
GP + G D W + DA GK E+ AE+M P T ASG+
Sbjct: 796 GP-KGGGGDCAKRKSWARFKDACGKSEDWNKVSKAESMETLPERTKASGE 844
>gi|27437001 potassium voltage-gated channel, subfamily H, member 1
isoform 1 [Homo sapiens]
Length = 989
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 22 GPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGK 71
GP + G D W + DA GK E+ AE+M P T ASG+
Sbjct: 823 GP-KGGGGDCAKRKSWARFKDACGKSEDWNKVSKAESMETLPERTKASGE 871
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEE 50
GG+ G + GA AAT G AG+ +G G GG E E
Sbjct: 20 GGSAGEQEGAMV-AATQGAAAAAGSGAGTGGGTASGGTEGGSAESE 64
Score = 27.3 bits (59), Expect = 3.3
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 8 EGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPGMTA 67
+G + A + A T G T G + G A +DA K EE H+ + TA
Sbjct: 35 QGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDA--SKNEEDEGHSNSSPRHSEAATA 92
Query: 68 ASGKLYQFRHPVRLFWPKSKCYDYLYQEAEAL---LKNFPIQAT-----ISFYEDSDSED 119
+ F + K DY + E + LK PI +++S+S D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 120 EIED 123
++ D
Sbjct: 153 KVMD 156
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEE 50
GG+ G + GA AAT G AG+ +G G GG E E
Sbjct: 20 GGSAGEQEGAMV-AATQGAAAAAGSGAGTGGGTASGGTEGGSAESE 64
Score = 27.3 bits (59), Expect = 3.3
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 8 EGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPGMTA 67
+G + A + A T G T G + G A +DA K EE H+ + TA
Sbjct: 35 QGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDA--SKNEEDEGHSNSSPRHSEAATA 92
Query: 68 ASGKLYQFRHPVRLFWPKSKCYDYLYQEAEAL---LKNFPIQAT-----ISFYEDSDSED 119
+ F + K DY + E + LK PI +++S+S D
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 120 EIED 123
++ D
Sbjct: 153 KVMD 156
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 27.7 bits (60), Expect = 2.6
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 5 GGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPG 64
G G G A A GP G D D +++EE A A P GPG
Sbjct: 1284 GADAGAAGGEAGGAGAPGPAEEDGEDE----------DEDEEEDEEAAAPGAAAGPRGPG 1333
Query: 65 MTAAS 69
A+
Sbjct: 1334 RARAA 1338
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 1 MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMP 60
+ GA +G +A GP R +G W+P V++G P+ P
Sbjct: 151 LHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPS------P 204
Query: 61 DGPGMTAAS 69
P T AS
Sbjct: 205 GTPSATPAS 213
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 1 MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMP 60
+ GA +G +A GP R +G W+P V++G P+ P
Sbjct: 151 LHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPS------P 204
Query: 61 DGPGMTAAS 69
P T AS
Sbjct: 205 GTPSATPAS 213
>gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens]
Length = 182
Score = 27.3 bits (59), Expect = 3.3
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 2 ENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMP 60
EN G AE +++ AAA AA + GA G D+ + E P AE P
Sbjct: 5 ENQGPAEPSQAAAAAEAAAEEVMAEGGAQGGDCDSAAGDPDSAAGQMAEEPQTPAENAP 63
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 27.3 bits (59), Expect = 3.3
Identities = 12/50 (24%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 2 ENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEET 51
+++G A G+ SG+++ +++DG + ++G+ +G ++G + E E+
Sbjct: 22 DDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSG-----SESGSQSESES 66
>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
sapiens]
Length = 286
Score = 26.9 bits (58), Expect = 4.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 4 AGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGG 45
A GA + AA A DGP GA++ + G R GG
Sbjct: 138 ARGAATLPAAAATTTALDGPGAGGGAEAQFLGGGRSSAGGGG 179
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 26.9 bits (58), Expect = 4.4
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 14 AAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNHAAEAMPDGPGMTAASGKLY 73
A A GP+ GA G AG PW+D+G + ++ A T G Y
Sbjct: 95 AGGAPAVPGPSGLGGA-GGLAGLTFPWMDSGRRFAKDRLTAALSPFSG----TRRIGHPY 149
Query: 74 QFRHPVRLFWPKS 86
Q R P + P++
Sbjct: 150 QNRTPPKRKKPRT 162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,814,243
Number of Sequences: 37866
Number of extensions: 262860
Number of successful extensions: 695
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 54
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.