Guide to the Human Genome
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Name: CHD1 Sequence: fasta or formatted (1710aa) NCBI GI: 68299795
Description:

chromodomain helicase DNA binding protein 1

Referenced in:

Nonhistone Chromosomal Proteins
PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         70           2
 C cysteine            1.2         20           2
 D aspartate           7.5        129           3
 E glutamate           9.2        158           4
 F phenylalanine       2.6         45           1
 G glycine             5.6         96           2
 H histidine           3.6         62           2
 I isoleucine          4.8         82           2
 K lysine              9.4        161           3
 L leucine             8.1        138           2
 M methionine          1.5         26           2
 N asparagine          3.9         66           2
 P proline             3.7         64           2
 Q glutamine           5.0         85           9
 R arginine            6.7        115           3
 S serine             11.8        202           4
 T threonine           3.6         62           3
 V valine              3.0         51           2
 W tryptophan          1.5         26           1
 Y tyrosine            3.0         52           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromodomain helicase DNA binding protein 1 
CHD2                  0.564   chromodomain helicase DNA binding protein 2 isoform...
CHD4                  0.158   chromodomain helicase DNA binding protein 4 
CHD3                  0.157   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.157   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.157   chromodomain helicase DNA binding protein 3 isoform...
CHD5                  0.150   chromodomain helicase DNA binding protein 5 
CHD7                  0.143   chromodomain helicase DNA binding protein 7 
CHD8                  0.143   chromodomain helicase DNA binding protein 8 
CHD6                  0.142   chromodomain helicase DNA binding protein 6 
CHD9                  0.137   chromodomain helicase DNA binding protein 9 
CHD2                  0.129   chromodomain helicase DNA binding protein 2 isoform...
SMARCA1               0.122   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.120   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.118   SWI/SNF-related matrix-associated actin-dependent re...
CHD1L                 0.112   chromodomain helicase DNA binding protein 1-like [H...
SMARCA4               0.110   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.110   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.108   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.108   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.108   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.108   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.107   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.107   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.104   SWI/SNF-related matrix-associated actin-dependent r...
SMARCAD1              0.079   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.079   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.079   SWI/SNF-related, matrix-associated actin-dependent ...
ERCC6                 0.067   excision repair cross-complementing rodent repair def...
BTAF1                 0.065   BTAF1 RNA polymerase II, B-TFIID transcription facto...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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