Guide to the Human Genome
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Name: HNRNPD Sequence: fasta or formatted (336aa) NCBI GI: 14110417
Description:

heterogeneous nuclear ribonucleoprotein D isoform b

Referenced in:

hnRNP

Other entries for this name:
alt prot [306aa] heterogeneous nuclear ribonucleoprotein D isoform c
alt prot [355aa] heterogeneous nuclear ribonucleoprotein D isoform a
alt prot [287aa] heterogeneous nuclear ribonucleoprotein D isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         26           5
 C cysteine            0.9          3           1
 D aspartate           4.5         15           1
 E glutamate           8.0         27           3
 F phenylalanine       4.2         14           1
 G glycine            17.3         58           3
 H histidine           0.9          3           1
 I isoleucine          3.0         10           1
 K lysine              9.5         32           2
 L leucine             2.7          9           1
 M methionine          2.4          8           1
 N asparagine          4.5         15           2
 P proline             2.7          9           1
 Q glutamine           5.1         17           5
 R arginine            3.6         12           2
 S serine              7.1         24           1
 T threonine           4.2         14           2
 V valine              4.5         15           2
 W tryptophan          1.2          4           1
 Y tyrosine            6.2         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein D isoform b ... 
HNRNPD                0.982   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.788   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPD                0.770   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPAB               0.580   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRPDL                0.573   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPAB               0.467   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPA1               0.263   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA1               0.261   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA3               0.258   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA2B1             0.257   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA1L2             0.255   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.255   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA2B1             0.255   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
LOC120364             0.228   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.228   PREDICTED: similar to heterogeneous nuclear ribonucl...
MSI2                  0.228   musashi 2 isoform a 
LOC120364             0.227   PREDICTED: similar to heterogeneous nuclear ribonuc...
HNRNPA0               0.212   heterogeneous nuclear ribonucleoprotein A0 
MSI2                  0.211   musashi 2 isoform b 
MSI1                  0.208   musashi 1 
DAZAP1                0.190   DAZ associated protein 1 isoform a 
DAZAP1                0.190   DAZ associated protein 1 isoform b 
TARDBP                0.134   TAR DNA binding protein 
RBM19                 0.083   RNA binding motif protein 19 
RBM19                 0.083   RNA binding motif protein 19 
RBM19                 0.083   RNA binding motif protein 19 
NCL                   0.082   nucleolin 
CIRBP                 0.076   cold inducible RNA binding protein 
RBM3                  0.074   RNA binding motif protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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