Guide to the Human Genome
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Name: RIPPLY1 Sequence: fasta or formatted (151aa) NCBI GI: 156523052
Description:

ripply1 homolog

Referenced in:

Notch Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         21           4
 C cysteine            2.0          3           1
 D aspartate           6.0          9           1
 E glutamate          11.3         17           5
 F phenylalanine       2.6          4           1
 G glycine             4.6          7           2
 H histidine           1.3          2           2
 I isoleucine          1.3          2           1
 K lysine              3.3          5           1
 L leucine            12.6         19           2
 M methionine          1.3          2           1
 N asparagine          2.6          4           1
 P proline             7.3         11           1
 Q glutamine           4.0          6           1
 R arginine            4.0          6           1
 S serine              9.9         15           2
 T threonine           4.0          6           1
 V valine              4.0          6           1
 W tryptophan          2.0          3           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ripply1 homolog 
RIPPLY2               0.218   ripply2 protein 
DSCR6                 0.150   Down syndrome critical region protein 6 
TTBK1                 0.043   tau tubulin kinase 1 
HMGB1                 0.036   high-mobility group box 1 
TAOK2                 0.036   TAO kinase 2 isoform 1 
TAOK2                 0.036   TAO kinase 2 isoform 2 
C9orf75               0.036   hypothetical protein LOC286262 isoform 2 
C9orf75               0.036   hypothetical protein LOC286262 isoform 1 
ANO8                  0.036   anoctamin 8 
NCL                   0.036   nucleolin 
PHF23                 0.036   PHD finger protein 23 
CENPB                 0.036   centromere protein B 
ACIN1                 0.032   apoptotic chromatin condensation inducer 1 
BAZ1B                 0.032   bromodomain adjacent to zinc finger domain, 1B [Homo...
MYST4                 0.032   MYST histone acetyltransferase (monocytic leukemia)...
EIF3D                 0.032   eukaryotic translation initiation factor 3 subunit D ...
BCL11A                0.032   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.032   B-cell CLL/lymphoma 11A isoform 2 
PKNOX2                0.032   PBX/knotted 1 homeobox 2 
EHMT2                 0.029   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.029   euchromatic histone-lysine N-methyltransferase 2 is...
MYT1                  0.029   myelin transcription factor 1 
SCAF1                 0.029   SR-related CTD-associated factor 1 
HAP1                  0.029   huntingtin-associated protein 1 isoform 4 
HAP1                  0.029   huntingtin-associated protein 1 isoform 3 
HAP1                  0.029   huntingtin-associated protein 1 isoform 2 
YTHDC1                0.029   splicing factor YT521-B isoform 2 
CHIC1                 0.029   cysteine-rich hydrophobic domain 1 
GTF3C3                0.029   general transcription factor IIIC, polypeptide 3, 102...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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