Guide to the Human Genome
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Name: C9orf75 Sequence: fasta or formatted (650aa) NCBI GI: 190014638
Description:

hypothetical protein LOC286262 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {678aa} hypothetical protein LOC286262 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         77           2
 C cysteine            0.8          5           1
 D aspartate           2.5         16           1
 E glutamate          10.2         66          15
 F phenylalanine       2.8         18           1
 G glycine             7.8         51           3
 H histidine           1.4          9           1
 I isoleucine          1.7         11           2
 K lysine              3.5         23           2
 L leucine             7.7         50           2
 M methionine          0.8          5           1
 N asparagine          1.7         11           1
 P proline            15.4        100           8
 Q glutamine           3.8         25           2
 R arginine            8.3         54           3
 S serine              9.7         63           2
 T threonine           3.5         23           2
 V valine              4.6         30           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC286262 isoform 1 
C9orf75               0.988   hypothetical protein LOC286262 isoform 2 
NACA                  0.050   nascent polypeptide-associated complex alpha subuni...
KIAA1949              0.044   phostensin 
KIAA1949              0.044   phostensin 
PRB2                  0.036   proline-rich protein BstNI subfamily 2 
PRB4                  0.035   proline-rich protein BstNI subfamily 4 precursor [Ho...
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
TAF4                  0.034   TBP-associated factor 4 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
ZIC5                  0.033   zinc finger protein of the cerebellum 5 
KDM6B                 0.033   lysine (K)-specific demethylase 6B 
RAPH1                 0.033   Ras association and pleckstrin homology domains 1 is...
LMTK3                 0.033   lemur tyrosine kinase 3 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
COL1A1                0.031   alpha 1 type I collagen preproprotein 
PRB1                  0.031   proline-rich protein BstNI subfamily 1 isoform 1 pre...
KIAA1522              0.030   hypothetical protein LOC57648 
PRB3                  0.030   proline-rich protein BstNI subfamily 3 precursor [H...
SYNJ1                 0.029   synaptojanin 1 isoform a 
SRRM1                 0.029   serine/arginine repetitive matrix 1 
SYNJ1                 0.029   synaptojanin 1 isoform b 
SF3B4                 0.029   splicing factor 3b, subunit 4 
SYN1                  0.029   synapsin I isoform Ia 
MICALL2               0.029   MICAL-like 2 isoform 1 
CNOT3                 0.029   CCR4-NOT transcription complex, subunit 3 
PDCD7                 0.029   programmed cell death 7 
SAMD1                 0.029   sterile alpha motif domain containing 1 
GRIN2D                0.028   N-methyl-D-aspartate receptor subunit 2D precursor ...
SYN1                  0.028   synapsin I isoform Ib 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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