Guide to the Human Genome
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Name: C19orf22 Sequence: fasta or formatted (268aa) NCBI GI: 33342268
Description:

hypothetical protein LOC91300

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         22           2
 C cysteine            1.9          5           1
 D aspartate           4.5         12           1
 E glutamate           9.0         24           2
 F phenylalanine       3.0          8           2
 G glycine             6.3         17           2
 H histidine           1.5          4           1
 I isoleucine          1.9          5           1
 K lysine              3.4          9           1
 L leucine            13.4         36           3
 M methionine          2.2          6           1
 N asparagine          3.7         10           2
 P proline             6.7         18           2
 Q glutamine           4.1         11           1
 R arginine           11.6         31           3
 S serine              7.5         20           2
 T threonine           3.4          9           1
 V valine              4.5         12           1
 W tryptophan          0.7          2           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC91300 
PLEKHG2               0.029   common-site lymphoma/leukemia guanine nucleotide ex...
PCDHGC4               0.016   protocadherin gamma subfamily C, 4 isoform 2 precurs...
PCDHGC4               0.016   protocadherin gamma subfamily C, 4 isoform 1 precurs...
KIAA0649              0.014   1A6/DRIM (down-regulated in metastasis) interacting ...
ESPN                  0.014   espin 
UTF1                  0.012   undifferentiated embryonic cell transcription factor...
RASSF1                0.010   Ras association domain family 1 isoform D 
RASSF1                0.010   Ras association domain family 1 isoform C 
RASSF1                0.010   Ras association domain family 1 isoform A 
RASSF1                0.010   Ras association domain family 1 isoform B 
OTOG                  0.010   PREDICTED: otogelin isoform 1 
OTOG                  0.010   PREDICTED: otogelin isoform 2 
OTOG                  0.010   PREDICTED: otogelin isoform 2 
OTOG                  0.010   PREDICTED: otogelin isoform 1 
OTOG                  0.010   PREDICTED: otogelin isoform 2 
OTOG                  0.010   PREDICTED: otogelin isoform 1 
LOC100288667          0.010   PREDICTED: hypothetical protein XP_002344293 
IL11RA                0.010   interleukin 11 receptor, alpha isoform 1 precursor ...
IL11RA                0.010   interleukin 11 receptor, alpha isoform 2 precursor [...
IL11RA                0.010   interleukin 11 receptor, alpha isoform 1 precursor [H...
CYLC1                 0.010   cylicin, basic protein of sperm head cytoskeleton 1...
PHLPP2                0.010   PH domain and leucine rich repeat protein phosphatas...
SFRS11                0.010   splicing factor, arginine/serine-rich 11 
RIPPLY2               0.008   ripply2 protein 
KIAA1522              0.008   hypothetical protein LOC57648 
ZC3H13                0.008   zinc finger CCCH-type containing 13 
GTF2E2                0.008   general transcription factor IIE, polypeptide 2, beta...
PCDHA10               0.008   protocadherin alpha 10 isoform 3 precursor 
PCDHA10               0.008   protocadherin alpha 10 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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