Guide to the Human Genome
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Name: NUP62 Sequence: fasta or formatted (522aa) NCBI GI: 24497603
Description:

nucleoporin 62kDa

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [522aa] nucleoporin 62kDa
alt mRNA [522aa] nucleoporin 62kDa
alt mRNA [522aa] nucleoporin 62kDa
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         71           3
 C cysteine            0.6          3           1
 D aspartate           2.9         15           1
 E glutamate           4.6         24           2
 F phenylalanine       5.2         27           1
 G glycine             9.6         50           2
 H histidine           1.0          5           1
 I isoleucine          3.4         18           2
 K lysine              3.6         19           1
 L leucine             8.0         42           2
 M methionine          1.0          5           1
 N asparagine          3.4         18           1
 P proline             6.5         34           2
 Q glutamine           5.2         27           2
 R arginine            2.1         11           2
 S serine             10.3         54           4
 T threonine          15.5         81           3
 V valine              2.3         12           1
 W tryptophan          0.6          3           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleoporin 62kDa 
NUP62                 1.000   nucleoporin 62kDa 
NUP62                 1.000   nucleoporin 62kDa 
NUP62                 1.000   nucleoporin 62kDa 
NUP62CL               0.148   nucleoporin 62kDa C-terminal like 
MUC5B                 0.065   mucin 5, subtype B, tracheobronchial 
MUC5AC                0.064   mucin 5AC 
MUC21                 0.059   mucin 21 
NUPL1                 0.053   nucleoporin like 1 isoform a 
NUPL1                 0.051   nucleoporin like 1 isoform b 
MUC3A                 0.050   PREDICTED: mucin 3A, intestinal 
NUP153                0.050   nucleoporin 153kDa 
NUP98                 0.048   nucleoporin 98kD isoform 4 
NUP98                 0.048   nucleoporin 98kD isoform 3 
NUP98                 0.048   nucleoporin 98kD isoform 1 
NUP98                 0.048   nucleoporin 98kD isoform 2 
MUC2                  0.046   mucin 2 precursor 
LOC100294420          0.046   PREDICTED: similar to mucin 2 
LOC100294249          0.046   PREDICTED: hypothetical protein XP_002344067 
MUC3A                 0.046   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100293409          0.046   PREDICTED: similar to Mucin-19 
LOC100291118          0.046   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.046   PREDICTED: hypothetical protein XP_002343203 
MUC6                  0.046   mucin 6, gastric 
LOC729792             0.045   PREDICTED: hypothetical protein 
LOC729792             0.045   PREDICTED: hypothetical protein 
LOC729792             0.045   PREDICTED: hypothetical protein 
LOC100294501          0.045   PREDICTED: hypothetical protein 
LOC100294238          0.045   PREDICTED: hypothetical protein 
LOC100294204          0.045   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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