Guide to the Human Genome
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Name: LOC100289162 Sequence: fasta or formatted (552aa) NCBI GI: 239743015
Description:

PREDICTED: hypothetical protein XP_002342718

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         59           2
 C cysteine            4.3         24           1
 D aspartate           2.5         14           2
 E glutamate           3.6         20           2
 F phenylalanine       1.8         10           1
 G glycine             7.2         40           2
 H histidine           6.3         35           2
 I isoleucine          3.6         20           1
 K lysine              3.6         20           1
 L leucine             9.1         50           2
 M methionine          2.4         13           1
 N asparagine          1.8         10           1
 P proline            10.5         58           2
 Q glutamine           6.3         35           2
 R arginine            9.4         52           2
 S serine              4.9         27           2
 T threonine           4.3         24           1
 V valine              4.2         23           3
 W tryptophan          1.8         10           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342718 
LOC100289898          0.997   PREDICTED: hypothetical protein XP_002346876 
LOC100293694          0.413   PREDICTED: hypothetical protein 
LOC100287903          0.014   PREDICTED: hypothetical protein XP_002343649 
LOC100134663          0.011   PREDICTED: hypothetical protein, partial 
LOC100287936          0.011   PREDICTED: hypothetical protein XP_002343650 
NDN                   0.010   necdin 
LOC643355             0.010   PREDICTED: hypothetical protein 
RERE                  0.010   atrophin-1 like protein isoform b 
RERE                  0.010   atrophin-1 like protein isoform a 
RERE                  0.010   atrophin-1 like protein isoform a 
CNGB1                 0.009   cyclic nucleotide gated channel beta 1 isoform b [H...
CNGB1                 0.009   cyclic nucleotide gated channel beta 1 isoform a [H...
SATL1                 0.009   spermidine/spermine N1-acetyl transferase-like 1 [Ho...
LOC100287484          0.009   PREDICTED: hypothetical protein XP_002343105 
ZNF469                0.008   zinc finger protein 469 
NEFH                  0.008   neurofilament, heavy polypeptide 200kDa 
ZMIZ1                 0.007   retinoic acid induced 17 
LOC100133500          0.007   PREDICTED: hypothetical protein 
LOC100293662          0.007   PREDICTED: hypothetical protein 
LOC100289444          0.007   PREDICTED: hypothetical protein 
LOC100289444          0.007   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.007   PREDICTED: hypothetical protein 
LRRC56                0.007   leucine rich repeat containing 56 
LOC388906             0.007   PREDICTED: hypothetical protein 
LOC388906             0.007   PREDICTED: hypothetical protein 
LOC388906             0.007   PREDICTED: hypothetical protein 
HGC6.3                0.007   hypothetical protein LOC100128124 
LOC100291911          0.006   PREDICTED: similar to Putative uncharacterized prot...
CREB5                 0.006   cAMP responsive element binding protein 5 isoform de...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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