Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TLX2 Sequence: fasta or formatted (284aa) NCBI GI: 7706621
Description:

T-cell leukemia homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         28           2
 C cysteine            0.4          1           1
 D aspartate           2.5          7           1
 E glutamate           4.2         12           2
 F phenylalanine       3.2          9           1
 G glycine            13.7         39           3
 H histidine           3.5         10           2
 I isoleucine          1.8          5           1
 K lysine              3.2          9           2
 L leucine            11.3         32           3
 M methionine          1.4          4           1
 N asparagine          2.5          7           1
 P proline            11.6         33           3
 Q glutamine           4.2         12           2
 R arginine            9.5         27           2
 S serine              7.0         20           2
 T threonine           3.5         10           1
 V valine              3.9         11           2
 W tryptophan          1.4          4           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell leukemia homeobox 2 
TLX3                  0.518   T-cell leukemia homeobox 3 
TLX1                  0.502   T-cell leukemia homeobox 1 
HMX2                  0.142   H6 family homeobox 2 
NKX6-1                0.117   NK6 transcription factor related, locus 1 
HHEX                  0.115   hematopoietically expressed homeobox 
HMX1                  0.113   homeo box (H6 family) 1 
BARHL1                0.108   BarH-like homeobox 1 
HMX3                  0.106   H6 family homeobox 3 
LBX1                  0.101   ladybird homeobox 1 
NKX6-2                0.101   NK6 transcription factor related, locus 2 
MSX1                  0.101   msh homeobox 1 
BARHL2                0.101   BarH-like homeobox 2 
EMX1                  0.101   empty spiracles homolog 1 
HOXD4                 0.099   homeobox D4 
NKX1-1                0.099   PREDICTED: NK1 homeobox 1 
MNX1                  0.099   homeo box HB9 
PDX1                  0.098   pancreatic and duodenal homeobox 1 
HOXD3                 0.098   homeobox D3 
EMX2                  0.098   empty spiracles homeobox 2 
LBX2                  0.096   ladybird homeobox 2 
NKX3-2                0.096   NK3 homeobox 2 
NKX2-1                0.094   thyroid transcription factor 1 isoform 1 
NKX2-8                0.094   NK2 homeobox 8 
NKX1-1                0.094   PREDICTED: HPX-153 homeobox 
NKX2-3                0.094   NK2 transcription factor related, locus 3 
NKX2-1                0.092   thyroid transcription factor 1 isoform 2 
NKX3-1                0.092   NK3 homeobox 1 
MSX2                  0.092   msh homeobox 2 
NKX2-5                0.092   NK2 transcription factor related, locus 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press