Guide to the Human Genome
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Name: FBF1 Sequence: fasta or formatted (1133aa) NCBI GI: 122937382
Description:

Fas (TNFRSF6) binding factor 1

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6        120           3
 C cysteine            0.6          7           1
 D aspartate           4.4         50           2
 E glutamate          10.6        120           3
 F phenylalanine       1.6         18           2
 G glycine             5.6         64           2
 H histidine           2.6         29           1
 I isoleucine          1.8         20           2
 K lysine              5.9         67           2
 L leucine            11.0        125           3
 M methionine          1.9         22           1
 N asparagine          0.9         10           1
 P proline             6.5         74           3
 Q glutamine           8.6         98           4
 R arginine            8.5         96           3
 S serine              9.7        110           3
 T threonine           4.9         55           2
 V valine              3.0         34           2
 W tryptophan          0.5          6           1
 Y tyrosine            0.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fas (TNFRSF6) binding factor 1 
LOC645202             0.045   PREDICTED: hypothetical protein LOC645202 
LOC283767             0.044   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.043   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.043   golgi autoantigen, golgin subfamily a-like 
TCHH                  0.043   trichohyalin 
PLEC1                 0.039   plectin 1 isoform 11 
PLEC1                 0.039   plectin 1 isoform 10 
PLEC1                 0.039   plectin 1 isoform 8 
PLEC1                 0.039   plectin 1 isoform 7 
PLEC1                 0.039   plectin 1 isoform 6 
PLEC1                 0.039   plectin 1 isoform 3 
PLEC1                 0.039   plectin 1 isoform 2 
PLEC1                 0.039   plectin 1 isoform 1 
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CCDC88B               0.038   coiled-coil domain containing 88 
CEP250                0.037   centrosomal protein 2 
LOC283685             0.035   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MAD1L1                0.034   MAD1-like 1 protein 
MAD1L1                0.034   MAD1-like 1 protein 
MAD1L1                0.034   MAD1-like 1 protein 
CGNL1                 0.034   cingulin-like 1 
GOLGA3                0.034   Golgi autoantigen, golgin subfamily a, 3 
MYH14                 0.033   myosin, heavy chain 14 isoform 1 
MYH14                 0.033   myosin, heavy chain 14 isoform 2 
MYH14                 0.033   myosin, heavy chain 14 isoform 3 
LOC100133758          0.033   PREDICTED: hypothetical protein, partial 
CROCC                 0.033   ciliary rootlet coiled-coil 
NUMA1                 0.033   nuclear mitotic apparatus protein 1 
CEP110                0.033   centrosomal protein 110kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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