Guide to the Human Genome
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Name: RIPPLY2 Sequence: fasta or formatted (128aa) NCBI GI: 58000465
Description:

ripply2 protein

Referenced in:

Notch Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         19           3
 C cysteine            2.3          3           1
 D aspartate           7.0          9           1
 E glutamate          10.9         14           3
 F phenylalanine       3.9          5           1
 G glycine            10.2         13           2
 H histidine           1.6          2           1
 I isoleucine          2.3          3           1
 K lysine              4.7          6           2
 L leucine             4.7          6           2
 M methionine          2.3          3           1
 N asparagine          3.1          4           1
 P proline             6.2          8           1
 Q glutamine           2.3          3           1
 R arginine            3.9          5           2
 S serine              5.5          7           1
 T threonine           5.5          7           1
 V valine              1.6          2           1
 W tryptophan          2.3          3           1
 Y tyrosine            4.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ripply2 protein 
RIPPLY1               0.246   ripply1 homolog 
DSCR6                 0.161   Down syndrome critical region protein 6 
FBF1                  0.036   Fas (TNFRSF6) binding factor 1 
NUP62                 0.020   nucleoporin 62kDa 
NUP62                 0.020   nucleoporin 62kDa 
NUP62                 0.020   nucleoporin 62kDa 
NUP62                 0.020   nucleoporin 62kDa 
FAM190B               0.020   granule cell antiserum positive 14 
EVPLL                 0.016   envoplakin-like 
C19orf22              0.016   hypothetical protein LOC91300 
LOC100287063          0.016   PREDICTED: hypothetical protein 
YLPM1                 0.016   YLP motif containing 1 
HNRNPD                0.012   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.012   heterogeneous nuclear ribonucleoprotein D isoform d ...
DDX51                 0.012   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
LOC100289898          0.012   PREDICTED: hypothetical protein XP_002346876 
LOC100289162          0.012   PREDICTED: hypothetical protein XP_002342718 
HOXA11                0.012   homeobox A11 
KCNH1                 0.012   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.012   potassium voltage-gated channel, subfamily H, member...
HNRNPD                0.012   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.012   heterogeneous nuclear ribonucleoprotein D isoform c ...
LMTK3                 0.012   lemur tyrosine kinase 3 
C9orf75               0.012   hypothetical protein LOC286262 isoform 2 
C9orf75               0.012   hypothetical protein LOC286262 isoform 1 
NAP1L5                0.008   nucleosome assembly protein 1-like 5 
CHD1                  0.008   chromodomain helicase DNA binding protein 1 
LOC100290709          0.008   PREDICTED: hypothetical protein XP_002346752 
TLX2                  0.008   T-cell leukemia homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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