Guide to the Human Genome
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Name: HNRNPD Sequence: fasta or formatted (287aa) NCBI GI: 51477708
Description:

heterogeneous nuclear ribonucleoprotein D isoform d

Referenced in:

hnRNP

Other entries for this name:
alt prot [306aa] heterogeneous nuclear ribonucleoprotein D isoform c
alt prot [336aa] heterogeneous nuclear ribonucleoprotein D isoform b
alt prot [355aa] heterogeneous nuclear ribonucleoprotein D isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         26           5
 C cysteine            1.0          3           1
 D aspartate           4.9         14           1
 E glutamate           9.4         27           3
 F phenylalanine       4.9         14           1
 G glycine            15.7         45           3
 H histidine           1.0          3           1
 I isoleucine          3.5         10           1
 K lysine             11.1         32           2
 L leucine             3.1          9           1
 M methionine          2.8          8           1
 N asparagine          2.1          6           1
 P proline             2.8          8           1
 Q glutamine           4.5         13           5
 R arginine            4.2         12           2
 S serine              7.0         20           1
 T threonine           4.5         13           2
 V valine              5.2         15           2
 W tryptophan          0.7          2           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein D isoform d ... 
HNRNPD                0.978   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.955   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.933   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPAB               0.581   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.549   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRPDL                0.532   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPA3               0.282   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA1               0.270   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA1               0.270   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
MSI2                  0.270   musashi 2 isoform a 
HNRNPA2B1             0.266   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.264   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA1L2             0.261   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.261   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
MSI2                  0.252   musashi 2 isoform b 
MSI1                  0.246   musashi 1 
LOC120364             0.228   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.228   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.227   PREDICTED: similar to heterogeneous nuclear ribonuc...
DAZAP1                0.207   DAZ associated protein 1 isoform a 
DAZAP1                0.207   DAZ associated protein 1 isoform b 
HNRNPA0               0.200   heterogeneous nuclear ribonucleoprotein A0 
TARDBP                0.156   TAR DNA binding protein 
RBM19                 0.101   RNA binding motif protein 19 
RBM19                 0.101   RNA binding motif protein 19 
RBM19                 0.101   RNA binding motif protein 19 
NCL                   0.094   nucleolin 
RBM39                 0.088   RNA binding motif protein 39 isoform b 
RBM39                 0.088   RNA binding motif protein 39 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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