Guide to the Human Genome
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Name: KCNH1 Sequence: fasta or formatted (989aa) NCBI GI: 27437001
Description:

potassium voltage-gated channel, subfamily H, member 1 isoform 1

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [962aa] potassium voltage-gated channel, subfamily H, member 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         67           2
 C cysteine            1.9         19           1
 D aspartate           5.8         57           2
 E glutamate           6.1         60           4
 F phenylalanine       5.0         49           2
 G glycine             5.8         57           4
 H histidine           2.1         21           1
 I isoleucine          6.2         61           2
 K lysine              6.2         61           2
 L leucine             9.0         89           2
 M methionine          2.2         22           2
 N asparagine          3.8         38           2
 P proline             4.2         42           3
 Q glutamine           3.7         37           2
 R arginine            5.8         57           2
 S serine              8.0         79           2
 T threonine           5.3         52           2
 V valine              7.8         77           2
 W tryptophan          1.5         15           1
 Y tyrosine            2.9         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, subfamily H, member... 
KCNH1                 0.964   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.721   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.548   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.545   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.264   potassium voltage-gated channel, subfamily H, member...
KCNH8                 0.253   potassium voltage-gated channel, subfamily H, member...
KCNH3                 0.244   potassium voltage-gated channel, subfamily H (eag-re...
KCNH4                 0.239   potassium voltage-gated channel, subfamily H, member ...
KCNH7                 0.223   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.223   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.222   voltage-gated potassium channel, subfamily H, member ...
KCNH6                 0.199   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.195   voltage-gated potassium channel, subfamily H, member...
KCNH7                 0.148   potassium voltage-gated channel, subfamily H, member...
HCN1                  0.075   hyperpolarization activated cyclic nucleotide-gated...
HCN2                  0.071   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.071   hyperpolarization activated cyclic nucleotide-gated p...
HCN3                  0.068   hyperpolarization activated cyclic nucleotide-gated ...
CNGA3                 0.062   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.062   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA2                 0.060   cyclic nucleotide gated channel alpha 2 
CNGA1                 0.057   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.057   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA4                 0.052   cyclic nucleotide gated channel alpha 4 
CNGB3                 0.040   cyclic nucleotide gated channel beta 3 
CNGB1                 0.039   cyclic nucleotide gated channel beta 1 isoform a [H...
KCNU1                 0.010   potassium channel, subfamily U, member 1 
KCNK17                0.009   potassium channel, subfamily K, member 17 isoform 2...
KCNK17                0.009   potassium channel, subfamily K, member 17 isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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