Guide to the Human Genome
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Name: YLPM1 Sequence: fasta or formatted (2146aa) NCBI GI: 146134388
Description:

YLP motif containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9        105           4
 C cysteine            0.2          4           1
 D aspartate           6.6        141           2
 E glutamate           7.6        164           4
 F phenylalanine       2.1         46           2
 G glycine             6.7        143           3
 H histidine           2.4         51           2
 I isoleucine          2.2         48           2
 K lysine              4.8        102           3
 L leucine             5.7        123           2
 M methionine          3.3         70           2
 N asparagine          2.1         45           2
 P proline            15.6        334           8
 Q glutamine           6.7        144           4
 R arginine            8.2        177           2
 S serine              9.3        199           7
 T threonine           3.2         69           2
 V valine              3.9         84           2
 W tryptophan          1.4         30           2
 Y tyrosine            3.1         67           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   YLP motif containing 1 
MLL2                  0.026   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
TTN                   0.020   titin isoform N2-A 
FMN2                  0.019   formin 2 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
PRB2                  0.019   proline-rich protein BstNI subfamily 2 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
RAPH1                 0.018   Ras association and pleckstrin homology domains 1 is...
WBP11                 0.018   WW domain binding protein 11 
BRD4                  0.017   bromodomain-containing protein 4 isoform long 
CPSF6                 0.017   cleavage and polyadenylation specific factor 6, 68 ...
MUC2                  0.017   mucin 2 precursor 
SFRS15                0.016   splicing factor, arginine/serine-rich 15 isoform 3 ...
ATN1                  0.016   atrophin-1 
ATN1                  0.016   atrophin-1 
MLL4                  0.016   myeloid/lymphoid or mixed-lineage leukemia 4 
SFRS15                0.016   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.016   splicing factor, arginine/serine-rich 15 isoform 1 [...
PCLO                  0.016   piccolo isoform 2 
PCLO                  0.016   piccolo isoform 1 
SF3A2                 0.016   splicing factor 3a, subunit 2 
WIPF3                 0.015   WAS/WASL interacting protein family, member 3 [Homo...
SF3B4                 0.015   splicing factor 3b, subunit 4 
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
WASF2                 0.015   WAS protein family, member 2 
PRB1                  0.015   proline-rich protein BstNI subfamily 1 isoform 1 pre...
CCNK                  0.015   cyclin K isoform 1 
EIF3A                 0.015   eukaryotic translation initiation factor 3, subunit 1...
DIAPH1                0.015   diaphanous 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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