Guide to the Human Genome
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Name: DSCR6 Sequence: fasta or formatted (190aa) NCBI GI: 9506557
Description:

Down syndrome critical region protein 6

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         14           3
 C cysteine            1.6          3           1
 D aspartate           4.2          8           2
 E glutamate           8.9         17           2
 F phenylalanine       2.6          5           1
 G glycine            14.7         28           3
 H histidine           2.6          5           1
 I isoleucine          1.6          3           1
 K lysine              3.2          6           1
 L leucine             4.7          9           2
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            13.2         25           4
 Q glutamine           6.3         12           1
 R arginine            8.4         16           1
 S serine              8.4         16           3
 T threonine           3.2          6           1
 V valine              3.2          6           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Down syndrome critical region protein 6 
RIPPLY1               0.109   ripply1 homolog 
RIPPLY2               0.104   ripply2 protein 
PLCH2                 0.034   phospholipase C, eta 2 
EWSR1                 0.034   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.034   Ewing sarcoma breakpoint region 1 isoform 1 
MINK1                 0.034   misshapen/NIK-related kinase isoform 2 
MINK1                 0.034   misshapen/NIK-related kinase isoform 3 
MINK1                 0.034   misshapen/NIK-related kinase isoform 1 
LOC100287420          0.031   PREDICTED: hypothetical protein XP_002343588 
ASXL1                 0.031   additional sex combs like 1 
UTF1                  0.029   undifferentiated embryonic cell transcription factor...
LOC100294404          0.029   PREDICTED: hypothetical protein isoform 2 
LOC100294404          0.029   PREDICTED: hypothetical protein isoform 1 
ZNF696                0.029   zinc finger protein 696 
ARHGEF17              0.026   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
ZNF469                0.026   zinc finger protein 469 
PRB2                  0.026   proline-rich protein BstNI subfamily 2 
C21orf66              0.026   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.026   GC-rich sequence DNA-binding factor candidate isofor...
HNRNPAB               0.026   heterogeneous nuclear ribonucleoprotein A/B isoform ...
EPAS1                 0.021   endothelial PAS domain protein 1 
PRH1                  0.021   proline-rich protein HaeIII subfamily 1 
WDR33                 0.021   WD repeat domain 33 isoform 1 
LOC100128979          0.021   PREDICTED: hypothetical protein 
LOC100128979          0.021   PREDICTED: hypothetical protein 
LRRC38                0.021   PREDICTED: leucine rich repeat containing 38 
LOC100128979          0.021   PREDICTED: hypothetical protein 
LRRC38                0.021   PREDICTED: leucine rich repeat containing 38 
SETD1A                0.021   SET domain containing 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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