Guide to the Human Genome
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Name: HNRNPD Sequence: fasta or formatted (355aa) NCBI GI: 14110420
Description:

heterogeneous nuclear ribonucleoprotein D isoform a

Referenced in:

hnRNP

Other entries for this name:
alt prot [306aa] heterogeneous nuclear ribonucleoprotein D isoform c
alt prot [336aa] heterogeneous nuclear ribonucleoprotein D isoform b
alt prot [287aa] heterogeneous nuclear ribonucleoprotein D isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         29           5
 C cysteine            0.8          3           1
 D aspartate           4.2         15           1
 E glutamate           8.5         30           3
 F phenylalanine       3.9         14           1
 G glycine            16.3         58           3
 H histidine           1.4          5           1
 I isoleucine          2.8         10           1
 K lysine              9.0         32           2
 L leucine             2.5          9           1
 M methionine          2.3          8           1
 N asparagine          4.5         16           2
 P proline             2.8         10           1
 Q glutamine           5.1         18           5
 R arginine            3.9         14           2
 S serine              7.9         28           2
 T threonine           4.2         15           2
 V valine              4.2         15           2
 W tryptophan          1.4          5           1
 Y tyrosine            5.9         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein D isoform a ... 
HNRNPD                0.928   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.799   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.728   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPAB               0.532   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRPDL                0.525   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPAB               0.425   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPA3               0.245   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA1               0.244   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA1               0.243   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA2B1             0.240   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.240   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA1L2             0.238   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.238   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
LOC120364             0.215   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.215   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.213   PREDICTED: similar to heterogeneous nuclear ribonuc...
MSI2                  0.205   musashi 2 isoform a 
HNRNPA0               0.201   heterogeneous nuclear ribonucleoprotein A0 
MSI2                  0.199   musashi 2 isoform b 
MSI1                  0.195   musashi 1 
DAZAP1                0.175   DAZ associated protein 1 isoform a 
DAZAP1                0.175   DAZ associated protein 1 isoform b 
TARDBP                0.129   TAR DNA binding protein 
NCL                   0.081   nucleolin 
RBM19                 0.081   RNA binding motif protein 19 
RBM19                 0.081   RNA binding motif protein 19 
RBM19                 0.081   RNA binding motif protein 19 
CIRBP                 0.072   cold inducible RNA binding protein 
RBM3                  0.070   RNA binding motif protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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