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Search of human proteins with 56117844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56117844 synovial sarcoma translocation, chromosome 18
isoform 2 [Homo sapiens]
(387 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 849 0.0
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 833 0.0
gi|39777614 SS18-like protein 1 [Homo sapiens] 417 e-117
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 105 5e-23
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 105 7e-23
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 89 7e-18
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 88 1e-17
gi|10047104 synovial sarcoma translocation gene on chromosome 18... 83 5e-16
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 79 5e-15
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 79 5e-15
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 76 4e-14
gi|55750053 atrophin-1 [Homo sapiens] 73 5e-13
gi|55750041 atrophin-1 [Homo sapiens] 73 5e-13
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 70 2e-12
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 70 2e-12
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 70 4e-12
gi|19924099 synapsin I isoform Ia [Homo sapiens] 68 2e-11
gi|19924097 synapsin I isoform Ib [Homo sapiens] 68 2e-11
gi|110347429 mediator complex subunit 12 [Homo sapiens] 66 5e-11
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 66 6e-11
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 65 8e-11
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 65 8e-11
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 65 1e-10
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 64 2e-10
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 64 2e-10
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 64 2e-10
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 64 2e-10
gi|119943102 CREB binding protein isoform b [Homo sapiens] 63 4e-10
gi|119943104 CREB binding protein isoform a [Homo sapiens] 63 4e-10
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 63 4e-10
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 849 bits (2194), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
Sbjct: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
Query: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
Sbjct: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
Sbjct: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
Sbjct: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ 300
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ 300
Query: 301 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR 360
QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR
Sbjct: 301 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR 360
Query: 361 PTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
PTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sbjct: 361 PTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 833 bits (2152), Expect = 0.0
Identities = 387/418 (92%), Positives = 387/418 (92%), Gaps = 31/418 (7%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
Sbjct: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
Query: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
Sbjct: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
Sbjct: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
Sbjct: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPD------- 293
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPD
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
Query: 294 ------------------------GNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 329
GNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
Sbjct: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360
Query: 330 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sbjct: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 417 bits (1073), Expect = e-117
Identities = 229/419 (54%), Positives = 268/419 (63%), Gaps = 55/419 (13%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAFA+ R RGKGE+T IQKMLD+N+HLIQCI++ Q+KGKT+EC+QYQQ+LH NLVY
Sbjct: 1 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY 60
Query: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
LATIADSNQNMQSLLPAPPTQNM +GPG + QSG S SD + G PP+ +Q
Sbjct: 61 LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ 120
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
Q+ GP+H+ MQ PN L T+ S++ P GY+H+ P+SQ +P+Q Q T
Sbjct: 121 GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT 169
Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
+GNY R N++MQ N MM QQ + Y+ QGG QHYQGQ + MMGQ +Q
Sbjct: 170 ------IGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQS-SIAMMGQGSQ 222
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPD------- 293
G+ MMGQR + PYRP QQG QQY GQE+YYG+QYSH QG E M QQYYPD
Sbjct: 223 GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSH-SQGAAEPMGQQYYPDGHGDYAY 281
Query: 294 ------------------------GNSQYGQQQDAY-QGPPPQQGYPPQQQQYPGQQGYP 328
GNSQY QQQ Y QG QQ Y QQQYP QQ YP
Sbjct: 282 QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP 339
Query: 329 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
GQQQGYG +QG P QYP Y QGQGQQYG YR Q P QQRPYGY+QGQYGNYQQ
Sbjct: 340 GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTA-PSAQQQRPYGYEQGQYGNYQQ 396
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 105 bits (263), Expect = 5e-23
Identities = 115/355 (32%), Positives = 132/355 (37%), Gaps = 58/355 (16%)
Query: 76 PAPPTQNMPMGP---GGMNQSGPPPPP--------RSHNMPSDGMVGGGPPAPHMQNQMN 124
P+PP + P GP GG GPPPPP + N P G P P Q +
Sbjct: 51 PSPPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS 108
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVPSSQSMPV------Q 176
P P QGP P N P G GG P P
Sbjct: 109 RSPRSPPGKP-QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD 167
Query: 177 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 236
N+ S+ P GP P QP QGP PP + P GG QG PP G
Sbjct: 168 NKSRSSRSPPGKPQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQG 223
Query: 237 QVNQGNHMMGQRQIPPYRPPQQGPPQQYS----------GQEDYYGDQYSHGGQGPPE-G 285
QG++ + PP +P QGPP Q G+ Q + QGPP G
Sbjct: 224 PPPQGDNKSQSARSPPGKP--QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 281
Query: 286 MNQQYYPDGNSQYGQQQDAY---QGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGG-- 340
Q P G S+ + QGPPPQ G PQ P PG+ QG P QGG
Sbjct: 282 KPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPP-----PGKPQG-PPPQGGNK 335
Query: 341 -PGPQYPNYPQG---QGQQYGGYRPTQPGPPQ-PPQQ---RPYGYDQGQYGNYQQ 387
GP P PQG QG + PG PQ PPQQ P G GN QQ
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQ 390
Score = 102 bits (255), Expect = 4e-22
Identities = 108/338 (31%), Positives = 121/338 (35%), Gaps = 77/338 (22%)
Query: 77 APPTQNMPMGP---GGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHM 133
+PP + P GP GG GPPPPP G P P Q Q P P
Sbjct: 113 SPPGK--PQGPPPQGGNQPQGPPPPP------------GKPQGPPPQGGNKPQGPPPPGK 158
Query: 134 PMQGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVPSSQSMPVQNQMTMSQGQPMGN-- 189
P QGP P N + SS + P G GG P Q +P G
Sbjct: 159 P-QGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 217
Query: 190 ----YGPRP---NMSMQPNQGPMMHQQPPSQQYNMPQG--------------GGQHYQGQ 228
GP P N S P Q PP Q N PQG GG QG
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 277
Query: 229 QPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
PP G QG + PP +P QGPP Q Q G PP G Q
Sbjct: 278 PPPGKPQGPPPQGGSKSRSSRSPPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQ 326
Query: 289 QYYPDGNSQYGQQQDAYQGPPPQ---QGYPPQ-------QQQYPGQQGYPGQQQGYGPS- 337
P G ++ QGPPP QG PPQ + PG+ P QQ+G P
Sbjct: 327 GPPPQGGNKP-------QGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQG 379
Query: 338 ---QGGPGPQYPNYPQGQGQQYGGYRPTQPG-PPQPPQ 371
G PQ P P GQ G RP Q G P +PPQ
Sbjct: 380 PPPPAGGNPQQPQAPPA-GQPQGPPRPPQGGRPSRPPQ 416
Score = 100 bits (248), Expect = 3e-21
Identities = 106/330 (32%), Positives = 121/330 (36%), Gaps = 51/330 (15%)
Query: 77 APPTQ-NMPMGPGGMNQSGPPPPPRSHNMP-SDGMVGGGPPAPHMQNQMNGQMPGPNHMP 134
APP N P GP PPP+ N P G P P Q Q P P P
Sbjct: 39 APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 98
Query: 135 MQGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVP-----SSQSMPVQN----QMTMSQ 183
QGP P Q + + S + P G GG P Q P Q Q
Sbjct: 99 -QGP-PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 156
Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQG--------------GGQHYQGQQ 229
G+P G N S P Q PP Q N PQG GG QG
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 216
Query: 230 PPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQ 289
PP G QG++ + PP +P QGPP Q Q G PP G Q
Sbjct: 217 PPGKPQGPPPQGDNKSQSARSPPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQG 265
Query: 290 YYPDGNS--QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPN 347
P G + Q QGPPPQ G + + P PG+ QG P QGG PQ P
Sbjct: 266 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP-----PGKPQG-PPPQGGNQPQGPP 319
Query: 348 YPQGQGQ---QYGGYRPTQPGPPQPPQQRP 374
P G+ Q GG +P P PP PQ P
Sbjct: 320 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 349
Score = 89.4 bits (220), Expect = 5e-18
Identities = 99/318 (31%), Positives = 110/318 (34%), Gaps = 89/318 (27%)
Query: 68 NQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQM 127
N++ S P Q P G Q PPPP G P P Q Q
Sbjct: 168 NKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP-------------GKPQGPPPQGGNKPQG 214
Query: 128 PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
P P P QGP P N + S+ + P G+P
Sbjct: 215 PPPPGKP-QGPPPQGDNKSQSARSPP------------------------------GKPQ 243
Query: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
GP P QP QGP PP + P GG QG PP G QG
Sbjct: 244 ---GPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 296
Query: 248 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQG 307
+ PP +P QGPP Q Q QGPP P G QG
Sbjct: 297 SRSPPGKP--QGPPPQGGNQP-----------QGPPP-------PPGKP---------QG 327
Query: 308 PPPQQGYPPQQQQYPGQ-QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYG----GYRPT 362
PPPQ G PQ PG+ QG P QG S+ P P PQG QQ G G P
Sbjct: 328 PPPQGGNKPQGPPPPGKPQGPP--PQGGSKSRSARSP--PGKPQGPPQQEGNNPQGPPPP 383
Query: 363 QPGPPQPPQQRPYGYDQG 380
G PQ PQ P G QG
Sbjct: 384 AGGNPQQPQAPPAGQPQG 401
Score = 80.1 bits (196), Expect = 3e-15
Identities = 73/226 (32%), Positives = 88/226 (38%), Gaps = 41/226 (18%)
Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQG--------- 220
++ + + ++ G P G N P P Q PP Q N PQG
Sbjct: 20 NEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 79
Query: 221 -----GGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQY 275
GG QG PP G QG+ R PP +P QGPP Q Q
Sbjct: 80 GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS-PPGKP--QGPPPQGGNQPQ------ 130
Query: 276 SHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPP---QQGYPPQ-QQQYPGQQGYPGQQ 331
G PP G Q P G ++ QGPPP QG PPQ + + PG+
Sbjct: 131 ---GPPPPPGKPQGPPPQGGNK-------PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP 180
Query: 332 QGYGPSQGGPGPQYPNYPQGQGQ---QYGGYRPTQPGPPQPPQQRP 374
QG P QGG PQ P P G+ Q GG +P P PP PQ P
Sbjct: 181 QG-PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 225
Score = 48.9 bits (115), Expect = 8e-06
Identities = 53/172 (30%), Positives = 62/172 (36%), Gaps = 59/172 (34%)
Query: 208 QQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQ 267
++ PS PQG PP G GN G PP +P QGPP Q Q
Sbjct: 26 EESPSLIAGNPQGA--------PPQG-------GNKPQGPPS-PPGKP--QGPPPQGGNQ 67
Query: 268 EDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQ---QGYPPQQQQYPGQ 324
G PP G Q P G ++ QGPPP QG PPQ +
Sbjct: 68 PQ---------GPPPPPGKPQGPPPQGGNKP-------QGPPPPGKPQGPPPQGDKSRSP 111
Query: 325 QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYG 376
+ PG+ QG P PQ N PQG P PP +P G
Sbjct: 112 RSPPGKPQG-------PPPQGGNQPQG---------------PPPPPGKPQG 141
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 105 bits (262), Expect = 7e-23
Identities = 106/317 (33%), Positives = 115/317 (36%), Gaps = 51/317 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
P+P N P GP PPP+ N P G P P Q + P P
Sbjct: 39 PSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP- 97
Query: 136 QGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVP----SSQSMPVQNQMTMSQGQPMGN 189
QGP P N P G GG P Q P Q + S P G
Sbjct: 98 QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 157
Query: 190 -YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
GP P QP QGP PP + P GG+ QG PP G QG+
Sbjct: 158 PQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS- 212
Query: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGP 308
Q PP +P QGPP Q Q QGPP P G QGP
Sbjct: 213 QSPPGKP--QGPPPQGGNQP-----------QGPPP-------PPGKP---------QGP 243
Query: 309 PPQQGYPPQQQQYPGQ-QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYG----GYRPTQ 363
PPQ G PQ PG+ QG P QG SQ P P PQG QQ G G P
Sbjct: 244 PPQGGNKPQGPPPPGKPQGPPA--QGGSKSQSARSP--PGKPQGPPQQEGNNPQGPPPPA 299
Query: 364 PGPPQPPQQRPYGYDQG 380
G PQ PQ P G QG
Sbjct: 300 GGNPQQPQAPPAGQPQG 316
Score = 78.6 bits (192), Expect = 9e-15
Identities = 69/211 (32%), Positives = 84/211 (39%), Gaps = 33/211 (15%)
Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
++ + + ++ G P G N P P Q PP Q N P QG
Sbjct: 20 NEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKP-------QGPP 72
Query: 230 PPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQ 289
PP G QG+ R PP +P QGPP Q Q G PP G Q
Sbjct: 73 PPGKPQGPPPQGDKSRSPRS-PPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQG 120
Query: 290 YYPDGNSQYGQQQDAYQGPPP---QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 346
P G ++ QGPPP QG PPQ + + PG+ QG P QGG PQ P
Sbjct: 121 PPPQGGNR-------PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG-PPPQGGNQPQGP 172
Query: 347 NYPQGQGQ---QYGGYRPTQPGPPQPPQQRP 374
P G+ Q GG +P P PP PQ P
Sbjct: 173 PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPP 203
Score = 29.6 bits (65), Expect = 4.8
Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
A QS P P G N GPPPP GG P P Q
Sbjct: 265 AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP-----------AGGNPQQP--QAPPA 311
Query: 125 GQMPGPNHMPMQG 137
GQ GP P G
Sbjct: 312 GQPQGPPRPPQGG 324
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 89.0 bits (219), Expect = 7e-18
Identities = 102/326 (31%), Positives = 122/326 (37%), Gaps = 60/326 (18%)
Query: 67 SNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
S + S++ P P G G Q PPPP + P G NQ G
Sbjct: 24 SQEESPSVISGKPEGRRPQG-GNQPQRTPPPPGKPEGRPPQG-----------GNQSQGP 71
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSV-----PSSQSMPVQNQMT 180
P P +GP P N + P G G N S P P
Sbjct: 72 PPRPGKP--EGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGN 129
Query: 181 MSQGQPMGNYGPRPNMSM-QPNQGPMMHQQPPSQQYNMPQG----GGQHYQGQQPPMGMM 235
SQG P PRP P QG Q PP + P+G GG QG P G
Sbjct: 130 QSQGPP-----PRPGKPEGPPPQGGNQSQGPPPRP-GKPEGPPPQGGNQSQGPPPHPGKP 183
Query: 236 -GQVNQGNHMMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPD 293
G QG + Q Q PP RP + +GPP Q Q QGPP + P+
Sbjct: 184 EGPPPQGGN---QSQGPPPRPGKPEGPPPQGGNQS-----------QGPPPRPGK---PE 226
Query: 294 GNSQYGQQQDAYQGPPPQ----QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP 349
G G + QGPPP QG PPQ+ P + PG+ QG P G PQ P P
Sbjct: 227 GPPSQGGNKP--QGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQG--PPPPGGNPQQP-LP 281
Query: 350 QGQGQQYGGYRPTQPGPP-QPPQQRP 374
G+ G P Q G P +PPQ +P
Sbjct: 282 PPAGKPQGPPPPPQGGRPHRPPQGQP 307
Score = 71.2 bits (173), Expect = 1e-12
Identities = 72/211 (34%), Positives = 87/211 (41%), Gaps = 41/211 (19%)
Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM-GQVNQGN 242
G+P G N S P P + PP PQGG Q QG P G GQ QG
Sbjct: 55 GKPEGRPPQGGNQSQGPPPRPGKPEGPP------PQGGNQS-QGPPPRPGKPEGQPPQGG 107
Query: 243 HMMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQ 301
+ Q Q PP RP + +GPP Q Q QGPP + P+G G
Sbjct: 108 N---QSQGPPPRPGKPEGPPPQGGNQS-----------QGPPPRPGK---PEGPPPQGGN 150
Query: 302 QDAYQGPPPQ----QGYPPQQ-QQYPGQQGYPGQQQGYGPSQGG-------PGPQYPNYP 349
Q QGPPP+ +G PPQ Q G +PG+ +G P QGG P P P P
Sbjct: 151 QS--QGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEG-PPPQGGNQSQGPPPRPGKPEGP 207
Query: 350 QGQGQQYGGYRPTQPGPPQPPQQRPYGYDQG 380
QG P +PG P+ P + QG
Sbjct: 208 PPQGGNQSQGPPPRPGKPEGPPSQGGNKPQG 238
Score = 29.3 bits (64), Expect = 6.3
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 22/76 (28%)
Query: 306 QGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPG 365
+G PQ G PQ+ P PG+ +G P QGG Q P P +PG
Sbjct: 37 EGRRPQGGNQPQRTPPP-----PGKPEGR-PPQGGNQSQGP--------------PPRPG 76
Query: 366 PPQPPQQRPYGYDQGQ 381
P+ P P G +Q Q
Sbjct: 77 KPEGPP--PQGGNQSQ 90
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 88.2 bits (217), Expect = 1e-17
Identities = 107/338 (31%), Positives = 127/338 (37%), Gaps = 88/338 (26%)
Query: 75 LPAPPTQNMPMG----PGGMNQSGP--PPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP 128
LP P + P G PG GP PP P+ + P M GPP P G P
Sbjct: 665 LPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGP-P 723
Query: 129 GPN-HMPMQGPGPNQLNMTNS----SMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQ 183
GP H+ QGP P M M P HG GG P SQ + Q +SQ
Sbjct: 724 GPQGHLGPQGP-PGTQGMQGPPGPRGMQGPPHPHGIQGG-----PGSQGI----QGPVSQ 773
Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNH 243
G MG PR MQ GP +Q P Q M Q +G PP G++G Q
Sbjct: 774 GPLMG-LNPR---GMQGPPGPRENQGPAPQGMIMGHPP-QEMRGPHPPGGLLGHGPQ--E 826
Query: 244 MMGQRQI-----PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQY 298
M G ++I PP + GPPQ+ +GPP +QQ P G+
Sbjct: 827 MRGPQEIRGMQGPPPQGSMLGPPQEL---------------RGPPGSQSQQGPPQGS--- 868
Query: 299 GQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQG------------GPGPQYP 346
GPPPQ G Q PG QG +G PSQG G GP+ P
Sbjct: 869 -------LGPPPQGG----MQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAP 917
Query: 347 NYPQGQGQQYGGYRPTQPG----------PPQPPQQRP 374
+GQ G P PG PP P Q P
Sbjct: 918 FNQEGQST---GPPPLIPGLGQQGAQGRIPPLNPGQGP 952
Score = 77.0 bits (188), Expect = 3e-14
Identities = 98/321 (30%), Positives = 110/321 (34%), Gaps = 72/321 (22%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138
P+Q MPM M Q GPP P PP P Q QM Q P P H GP
Sbjct: 606 PSQQMPMN---MAQMGPPGPQGQFR----------PPGP--QGQMGPQGP-PLHQGGGGP 649
Query: 139 ----GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
GP + P HG G H P P QG P GP+
Sbjct: 650 QGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGP--------QGPP----GPQG 697
Query: 195 NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYR 254
+ Q + GP Q PP PQG + G Q P G G + Q PP
Sbjct: 698 SSGPQGHMGP---QGPPG-----PQG----HIGPQGPPGPQGHLGP--------QGPPGT 737
Query: 255 PPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPP----- 309
QGPP G G + HG QG P Q G QGPP
Sbjct: 738 QGMQGPP----GPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPREN 793
Query: 310 ----PQ---QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPT 362
PQ G+PPQ+ + P PG G+GP Q GPQ QG Q P
Sbjct: 794 QGPAPQGMIMGHPPQEMRGPHP---PGGLLGHGP-QEMRGPQEIRGMQGPPPQGSMLGPP 849
Query: 363 QPGPPQPPQQRPYGYDQGQYG 383
Q P Q G QG G
Sbjct: 850 QELRGPPGSQSQQGPPQGSLG 870
Score = 57.0 bits (136), Expect = 3e-08
Identities = 46/135 (34%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 245 MGQRQIPPYRPPQQGP-----PQQYSGQEDY----YGDQYSHGGQGPPEGMNQQYYPDGN 295
+ Q+Q+ +PP PQ + GQ G Q H Q P M Q P
Sbjct: 564 LAQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQ 623
Query: 296 SQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQ 355
Q+ + QG QG PP Q G QG+ G Q GP QG P PQ + PQG +
Sbjct: 624 GQF--RPPGPQGQMGPQG-PPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRH 680
Query: 356 YGGYRPTQP-GPPQP 369
G + P P GPP P
Sbjct: 681 PGPHGPLGPQGPPGP 695
Score = 41.6 bits (96), Expect = 0.001
Identities = 71/333 (21%), Positives = 119/333 (35%), Gaps = 59/333 (17%)
Query: 72 QSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMP------SDGMVGGGPPAPHMQNQMNG 125
Q L PP M PG Q P P P ++G GP AP Q G
Sbjct: 866 QGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQE---G 922
Query: 126 QMPGPNHM-----------------PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVP 168
Q GP + P QGPGPN+ S P+ G M H
Sbjct: 923 QSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNK----GDSRGPPNHHMGPMSERRHEQS 978
Query: 169 SS-QSMPVQNQMTMSQG--QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHY 225
+ P + Q P GP P+ ++ H P +++ + +
Sbjct: 979 GGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFH---PDKRFGHRL---REF 1032
Query: 226 QGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
+G+ P+ + +G PP+ PP + G+ G + G+ P +
Sbjct: 1033 EGRGGPLPQEEKWRRGG------PGPPF-PPDHREFSEGDGRGAARGPPGAWEGRRPGDE 1085
Query: 286 MNQQYYPDGNSQYGQQQDAYQ--GPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGP 343
+ P+ G+++++++ PP +G P + G+ G+PG + +GP +
Sbjct: 1086 RFPR-DPEDPRFRGRREESFRRGAPPRHEGRAPPR----GRDGFPGPED-FGPEENFDAS 1139
Query: 344 QYPN-----YPQGQGQQYGGYRPTQPGPPQPPQ 371
+ +G+G GG + P P + P+
Sbjct: 1140 EEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPR 1172
>gi|10047104 synovial sarcoma translocation gene on chromosome
18-like 2 [Homo sapiens]
Length = 77
Score = 82.8 bits (203), Expect = 5e-16
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAF RGK E+ IQ++L++N+ LI+CI++ QNKG+ +EC QYQ +LH NL+Y
Sbjct: 1 MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
Query: 61 LATIADSNQNMQS 73
LATIAD++ S
Sbjct: 61 LATIADASPTSTS 73
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 79.3 bits (194), Expect = 5e-15
Identities = 95/322 (29%), Positives = 112/322 (34%), Gaps = 42/322 (13%)
Query: 71 MQSLLPAPPTQNMPMG-PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
+ LL +P + G PGG GP DG G GP M +Q G
Sbjct: 295 LNQLLTSPSSARGYQGYPGGDYSGGP----------QDGGAGKGPA--DMASQCWGAAAA 342
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
G Q S + P S S GG + Q +QM + QP G
Sbjct: 343 AAAAAAASGGAQQ-----RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGG 397
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQP---PMGMMGQVNQG-NHMM 245
P QGP P Q + P GQ Y Q P PM M G+ +
Sbjct: 398 TNP-----YSQQQGP---PSGPQQGHGYP---GQPYGSQTPQRYPMTMQGRAQSAMGGLS 446
Query: 246 GQRQIPPYRPPQQGPPQQ-YSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDA 304
+QIPPY QQGP GQ YY Q H Q P Q ++Q QQ
Sbjct: 447 YTQQIPPYG--QQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQP 504
Query: 305 YQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPN----YPQGQGQQ-YGGY 359
PP Q P Q P Q + Y PSQ Q+P Y Q Q Q Y
Sbjct: 505 QSQPPQLQSSQPPYSQQPSQPPHQQSPAPY-PSQQSTTQQHPQSQPPYSQPQAQSPYQQQ 563
Query: 360 RPTQPGPPQPPQQRPYGYDQGQ 381
+P QP P QQ Y Q Q
Sbjct: 564 QPQQPAPSTLSQQAAYPQPQSQ 585
Score = 65.5 bits (158), Expect = 8e-11
Identities = 94/357 (26%), Positives = 119/357 (33%), Gaps = 62/357 (17%)
Query: 86 GPGGMNQ-SGPPPPPRSHNMPSD-------GMVGGGPPAP-HMQNQMNGQMPGPNHMPMQ 136
G GG+ +GP H P+ PPAP + + G PG
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247
Query: 137 GPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-----PSSQSMPVQNQMTMS------ 182
G P + + ++SS + G+MGG S P + P NQ+ S
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 183 -QGQPMGNYGPRPNMSMQPNQGPMMHQQ----PPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
QG P G+Y P M Q + GG + PM G
Sbjct: 308 YQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP-GS 366
Query: 238 VNQGNHMMGQRQIPPYRPPQQGP--PQQYSGQEDYY-------GDQYSHGGQGPPEG-MN 287
G + + P Q G PQ Y G Y G Q HG G P G
Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426
Query: 288 QQYYP---DGNSQ--------------YGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQ 330
Q YP G +Q YGQQ + G Q Y QQ +P QQ P
Sbjct: 427 PQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 331 QQGYGPSQGGPG-PQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQ 386
QQ PSQ P Y PQ Q Q + +QP Q P Q P+ Y + Q
Sbjct: 487 QQP--PSQTPHAQPSYQQQPQSQPPQL---QSSQPPYSQQPSQPPHQQSPAPYPSQQ 538
Score = 59.7 bits (143), Expect = 4e-09
Identities = 95/346 (27%), Positives = 119/346 (34%), Gaps = 59/346 (17%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGG---PPAPHMQN 121
ADS ++ + P P G G M GP P + S M GG PP P +
Sbjct: 1121 ADSKKSQPKIQPPSPA-----GSGSMQ--GPQTPQST----SSSMAEGGDLKPPTP--AS 1167
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
+ Q+P P+ PG ++ N S + N P+ P N M
Sbjct: 1168 TPHSQIP-----PL--PGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDM 1220
Query: 182 SQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
MG MS +PN+ P M + P S + M G G + G P
Sbjct: 1221 -----MGR------MSYEPNKDPYGSMRKAPGSDPF-MSSGQGPN-GGMGDPYSRAAGPG 1267
Query: 240 QGNHMMGQRQIPPYRPP----QQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ--QYYPD 293
GN MG RQ PY P + P G Q + P GM +Y P
Sbjct: 1268 LGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMSTGAPQPNLMPSNPDSGMYSPSRYPPQ 1327
Query: 294 GNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQG--YPGQQQGYG-PSQGGPGPQYPN--- 347
Q Q+ D+Y QG P +P QQ Y QQQ Y P G GP
Sbjct: 1328 QQQQQQQRHDSYGNQFSTQG-TPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEG 1386
Query: 348 ------YPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
Y GQGQ P P PQP Q+ Q Y Q
Sbjct: 1387 EMYSVPYSTGQGQPQQQQLP--PAQPQPASQQQAAQPSPQQDVYNQ 1430
Score = 59.3 bits (142), Expect = 6e-09
Identities = 82/329 (24%), Positives = 112/329 (34%), Gaps = 40/329 (12%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
A S + Q+ P P +Q +Q PPP + D AP M +
Sbjct: 569 APSTLSQQAAYPQPQSQQSQQT--AYSQQRFPPP---QELSQDSFGSQASSAPSMTSSKG 623
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSS----QSMPVQNQM 179
GQ ++ +Q + +++ S ++P + G++ G + S SS QS P Q+
Sbjct: 624 GQED--MNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPF 681
Query: 180 TMSQGQPM-GNYGPRPNMSMQP------NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
+ + G GP P+ P GP+ P Q GQ P M
Sbjct: 682 SPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSM 741
Query: 233 GMMGQVNQGNHMMGQRQIPPYRPPQQG---PPQQYSGQEDYYG----DQYSHGGQGPPEG 285
+M Q+P Y PQ G P+Q SG + + G Q S G GP G
Sbjct: 742 NQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQGG 801
Query: 286 MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG-PQ 344
QY P G Y P P G G G G PG P
Sbjct: 802 ---QYGPQG---------GYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPP 849
Query: 345 YPNYPQGQGQQYG-GYRPTQPGPPQPPQQ 372
Y P G+ G RP P P Q
Sbjct: 850 YGTLPPGRMSHASMGNRPYGPNMANMPPQ 878
Score = 52.4 bits (124), Expect = 7e-07
Identities = 69/258 (26%), Positives = 91/258 (35%), Gaps = 35/258 (13%)
Query: 128 PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
PG + G GPN M P S G N ++ Q P + +P
Sbjct: 1240 PGSDPFMSSGQGPN------GGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEP- 1292
Query: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV--NQGNHM- 244
GP NMS Q +M P S Y+ + Q Q QQ G QG
Sbjct: 1293 -GIGPEGNMSTGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSG 1351
Query: 245 ---------MGQRQIPPYRPPQQG----PPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYY 291
M Q+Q Y+ P G P +++ G+ Y YS G QG P+ QQ
Sbjct: 1352 SPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGE--MYSVPYSTG-QGQPQ---QQQL 1405
Query: 292 PDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP-NYPQ 350
P Q QQ A Q P Q Y YP +++ GGP Q+P + +
Sbjct: 1406 PPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATERR----PAGGPQNQFPFQFGR 1461
Query: 351 GQGQQYGGYRPTQPGPPQ 368
+ G Q PPQ
Sbjct: 1462 DRVSAPPGTNAQQNMPPQ 1479
Score = 51.2 bits (121), Expect = 2e-06
Identities = 98/388 (25%), Positives = 120/388 (30%), Gaps = 112/388 (28%)
Query: 80 TQNMPMGPGGMNQSGPP----PPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
+ + PM PG G P P P S P D M G P P+ Q GP P
Sbjct: 357 SHHAPMSPGSSGGGGQPLARTPQPSS---PMDQM-GKMRPQPYGGTNPYSQQQGPPSGPQ 412
Query: 136 QGPG-PNQLNMTNSSMNMPSSSHG----SMGG--------------------------YN 164
QG G P Q + + P + G +MGG YN
Sbjct: 413 QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYN 472
Query: 165 HSVPS-SQSMPVQNQMTMSQ-------------GQPMGNYGPRPNMSMQPNQGPMMHQQP 210
P Q P +Q SQ QP +P S QP+Q P HQQ
Sbjct: 473 QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP--HQQS 530
Query: 211 P----SQQ------------YNMPQGGGQHYQGQQP----PMGMMGQVNQGNHMMGQRQI 250
P SQQ Y+ PQ YQ QQP P + Q Q Q
Sbjct: 531 PAPYPSQQSTTQQHPQSQPPYSQPQAQSP-YQQQQPQQPAPSTLSQQAAYPQPQSQQSQQ 589
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSH-----GGQGPPEGMNQQY--------------- 290
Y + PPQ+ S +D +G Q S +G E MN
Sbjct: 590 TAYSQQRFPPPQELS--QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSID 647
Query: 291 -YPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP 349
P G + G QG +Q P Q + + P GP P P
Sbjct: 648 DLPMGTEGALSPGVSTSGISSSQG----EQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSP 703
Query: 350 QGQGQQYGGYRPTQPG-------PPQPP 370
Q G P P PP+PP
Sbjct: 704 ASVAQSRSG--PLSPAAVPGNQMPPRPP 729
Score = 40.8 bits (94), Expect = 0.002
Identities = 78/340 (22%), Positives = 98/340 (28%), Gaps = 55/340 (16%)
Query: 81 QNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGP 140
Q P + PPPP G A G+M +GP
Sbjct: 4 QVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAV 63
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP----NM 196
+ + S+G GG S + + S G N GPRP N+
Sbjct: 64 GPPQPLGKELQDGAESNGGGGG--GGAGSGGGPGAEPDLKNSNG----NAGPRPALNNNL 117
Query: 197 SMQPNQG-----PMMHQQPPSQQYNMPQ---GGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
+ P G + P S +P G GQ Y G+ P + G +
Sbjct: 118 TEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPY-GRSPSAVAAAAAAVFHQQHGGQ 176
Query: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGP 308
Q P Q G G E Y G Q + G P YYP+ S Y AY
Sbjct: 177 QSPGLAALQSGGG---GGLEPYAGPQQNSHDHGFPNHQYNSYYPN-RSAYPPPAPAYALS 232
Query: 309 PPQQGY-------------PPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQ 355
P+ G PP QQ +G + GG GP
Sbjct: 233 SPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFG-AMGGGGP----------SA 281
Query: 356 YGGYRPTQPGPP-------QPPQQRPY-GYDQGQYGNYQQ 387
GG P P P R Y GY G Y Q
Sbjct: 282 AGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQ 321
Score = 39.3 bits (90), Expect = 0.006
Identities = 41/150 (27%), Positives = 52/150 (34%), Gaps = 25/150 (16%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138
P P G S PP NMP M GGP + G M QG
Sbjct: 1451 PQNQFPFQFGRDRVSAPPGTNAQQNMPPQMM--GGPIQASAEVAQQGTM-------WQGR 1501
Query: 139 GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQ---------PMGN 189
+MT + N S+ G H V + M +Q +G P G
Sbjct: 1502 N----DMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGP 1557
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
P P M+ P P +Q PPS Q ++PQ
Sbjct: 1558 SAPVPPMTRPP---PSNYQPPPSMQNHIPQ 1584
Score = 31.2 bits (69), Expect = 1.7
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 25/136 (18%)
Query: 52 QMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVG 111
+MLHT D N + P+ T+ P GP PPP ++
Sbjct: 1531 EMLHT---------DQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPSNYQ-------- 1573
Query: 112 GGPPAPHMQNQM-NGQMPGPNHMPMQG-PGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS 169
P P MQN + P P PM+ P++ +S M M + G +H P+
Sbjct: 1574 ---PPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKA--GPPVPASHIAPA 1628
Query: 170 SQSMP-VQNQMTMSQG 184
P ++ +T G
Sbjct: 1629 PVQPPMIRRDITFPPG 1644
Score = 30.8 bits (68), Expect = 2.2
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPP--------------PPRSHNMPSDGMVGGGPPAPHMQ 120
+P M PGGMN+ PP NM GM+G GPP
Sbjct: 875 MPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGI 934
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS 155
N M G M P P G M N+S M +S
Sbjct: 935 NSMAG-MINPQGPPYSMGG----TMANNSAGMAAS 964
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 79.3 bits (194), Expect = 5e-15
Identities = 95/322 (29%), Positives = 112/322 (34%), Gaps = 42/322 (13%)
Query: 71 MQSLLPAPPTQNMPMG-PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
+ LL +P + G PGG GP DG G GP M +Q G
Sbjct: 295 LNQLLTSPSSARGYQGYPGGDYSGGP----------QDGGAGKGPA--DMASQCWGAAAA 342
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
G Q S + P S S GG + Q +QM + QP G
Sbjct: 343 AAAAAAASGGAQQ-----RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGG 397
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQP---PMGMMGQVNQG-NHMM 245
P QGP P Q + P GQ Y Q P PM M G+ +
Sbjct: 398 TNP-----YSQQQGP---PSGPQQGHGYP---GQPYGSQTPQRYPMTMQGRAQSAMGGLS 446
Query: 246 GQRQIPPYRPPQQGPPQQ-YSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDA 304
+QIPPY QQGP GQ YY Q H Q P Q ++Q QQ
Sbjct: 447 YTQQIPPYG--QQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQP 504
Query: 305 YQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPN----YPQGQGQQ-YGGY 359
PP Q P Q P Q + Y PSQ Q+P Y Q Q Q Y
Sbjct: 505 QSQPPQLQSSQPPYSQQPSQPPHQQSPAPY-PSQQSTTQQHPQSQPPYSQPQAQSPYQQQ 563
Query: 360 RPTQPGPPQPPQQRPYGYDQGQ 381
+P QP P QQ Y Q Q
Sbjct: 564 QPQQPAPSTLSQQAAYPQPQSQ 585
Score = 65.5 bits (158), Expect = 8e-11
Identities = 94/357 (26%), Positives = 119/357 (33%), Gaps = 62/357 (17%)
Query: 86 GPGGMNQ-SGPPPPPRSHNMPSD-------GMVGGGPPAP-HMQNQMNGQMPGPNHMPMQ 136
G GG+ +GP H P+ PPAP + + G PG
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247
Query: 137 GPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-----PSSQSMPVQNQMTMS------ 182
G P + + ++SS + G+MGG S P + P NQ+ S
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 183 -QGQPMGNYGPRPNMSMQPNQGPMMHQQ----PPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
QG P G+Y P M Q + GG + PM G
Sbjct: 308 YQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP-GS 366
Query: 238 VNQGNHMMGQRQIPPYRPPQQGP--PQQYSGQEDYY-------GDQYSHGGQGPPEG-MN 287
G + + P Q G PQ Y G Y G Q HG G P G
Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426
Query: 288 QQYYP---DGNSQ--------------YGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQ 330
Q YP G +Q YGQQ + G Q Y QQ +P QQ P
Sbjct: 427 PQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 331 QQGYGPSQGGPG-PQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQ 386
QQ PSQ P Y PQ Q Q + +QP Q P Q P+ Y + Q
Sbjct: 487 QQP--PSQTPHAQPSYQQQPQSQPPQL---QSSQPPYSQQPSQPPHQQSPAPYPSQQ 538
Score = 59.3 bits (142), Expect = 6e-09
Identities = 82/329 (24%), Positives = 112/329 (34%), Gaps = 40/329 (12%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
A S + Q+ P P +Q +Q PPP + D AP M +
Sbjct: 569 APSTLSQQAAYPQPQSQQSQQT--AYSQQRFPPP---QELSQDSFGSQASSAPSMTSSKG 623
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSS----QSMPVQNQM 179
GQ ++ +Q + +++ S ++P + G++ G + S SS QS P Q+
Sbjct: 624 GQED--MNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPF 681
Query: 180 TMSQGQPM-GNYGPRPNMSMQP------NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
+ + G GP P+ P GP+ P Q GQ P M
Sbjct: 682 SPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSM 741
Query: 233 GMMGQVNQGNHMMGQRQIPPYRPPQQG---PPQQYSGQEDYYG----DQYSHGGQGPPEG 285
+M Q+P Y PQ G P+Q SG + + G Q S G GP G
Sbjct: 742 NQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQGG 801
Query: 286 MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG-PQ 344
QY P G Y P P G G G G PG P
Sbjct: 802 ---QYGPQG---------GYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPP 849
Query: 345 YPNYPQGQGQQYG-GYRPTQPGPPQPPQQ 372
Y P G+ G RP P P Q
Sbjct: 850 YGTLPPGRMSHASMGNRPYGPNMANMPPQ 878
Score = 51.2 bits (121), Expect = 2e-06
Identities = 98/388 (25%), Positives = 120/388 (30%), Gaps = 112/388 (28%)
Query: 80 TQNMPMGPGGMNQSGPP----PPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
+ + PM PG G P P P S P D M G P P+ Q GP P
Sbjct: 357 SHHAPMSPGSSGGGGQPLARTPQPSS---PMDQM-GKMRPQPYGGTNPYSQQQGPPSGPQ 412
Query: 136 QGPG-PNQLNMTNSSMNMPSSSHG----SMGG--------------------------YN 164
QG G P Q + + P + G +MGG YN
Sbjct: 413 QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYN 472
Query: 165 HSVPS-SQSMPVQNQMTMSQ-------------GQPMGNYGPRPNMSMQPNQGPMMHQQP 210
P Q P +Q SQ QP +P S QP+Q P HQQ
Sbjct: 473 QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP--HQQS 530
Query: 211 P----SQQ------------YNMPQGGGQHYQGQQP----PMGMMGQVNQGNHMMGQRQI 250
P SQQ Y+ PQ YQ QQP P + Q Q Q
Sbjct: 531 PAPYPSQQSTTQQHPQSQPPYSQPQAQSP-YQQQQPQQPAPSTLSQQAAYPQPQSQQSQQ 589
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSH-----GGQGPPEGMNQQY--------------- 290
Y + PPQ+ S +D +G Q S +G E MN
Sbjct: 590 TAYSQQRFPPPQELS--QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSID 647
Query: 291 -YPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP 349
P G + G QG +Q P Q + + P GP P P
Sbjct: 648 DLPMGTEGALSPGVSTSGISSSQG----EQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSP 703
Query: 350 QGQGQQYGGYRPTQPG-------PPQPP 370
Q G P P PP+PP
Sbjct: 704 ASVAQSRSG--PLSPAAVPGNQMPPRPP 729
Score = 50.1 bits (118), Expect = 3e-06
Identities = 84/322 (26%), Positives = 105/322 (32%), Gaps = 74/322 (22%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGG---PPAPHMQN 121
ADS ++ + P P G G M GP P + S M GG PP P +
Sbjct: 1121 ADSKKSQPKIQPPSPA-----GSGSMQ--GPQTPQST----SSSMAEGGDLKPPTP--AS 1167
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
+ Q+P P+ PG ++ N S + N P+ P N M
Sbjct: 1168 TPHSQIP-----PL--PGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDM 1220
Query: 182 SQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
MG MS +PN+ P M + P S + M G G + G P
Sbjct: 1221 -----MGR------MSYEPNKDPYGSMRKAPGSDPF-MSSGQGPN-GGMGDPYSRAAGPG 1267
Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYG 299
GN MG RQ PY P Y + G GP +GN G
Sbjct: 1268 LGNVAMGPRQHYPYGGP--------------YDRVRTEPGIGP----------EGNMSTG 1303
Query: 300 QQQDAYQGPPPQQG------YPPQQQQYP--GQQGYPGQQQGYGPSQGGPGPQYPNYPQG 351
Q P G YPPQQQQ Y Q G G P P
Sbjct: 1304 APQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQ 1363
Query: 352 QGQQYGGYRPTQPGPPQPPQQR 373
Q QQ P P+P + R
Sbjct: 1364 QQQQVSSPAPL----PRPMENR 1381
Score = 40.8 bits (94), Expect = 0.002
Identities = 78/340 (22%), Positives = 98/340 (28%), Gaps = 55/340 (16%)
Query: 81 QNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGP 140
Q P + PPPP G A G+M +GP
Sbjct: 4 QVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAV 63
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP----NM 196
+ + S+G GG S + + S G N GPRP N+
Sbjct: 64 GPPQPLGKELQDGAESNGGGGG--GGAGSGGGPGAEPDLKNSNG----NAGPRPALNNNL 117
Query: 197 SMQPNQG-----PMMHQQPPSQQYNMPQ---GGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
+ P G + P S +P G GQ Y G+ P + G +
Sbjct: 118 TEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPY-GRSPSAVAAAAAAVFHQQHGGQ 176
Query: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGP 308
Q P Q G G E Y G Q + G P YYP+ S Y AY
Sbjct: 177 QSPGLAALQSGGG---GGLEPYAGPQQNSHDHGFPNHQYNSYYPN-RSAYPPPAPAYALS 232
Query: 309 PPQQGY-------------PPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQ 355
P+ G PP QQ +G + GG GP
Sbjct: 233 SPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFG-AMGGGGP----------SA 281
Query: 356 YGGYRPTQPGPP-------QPPQQRPY-GYDQGQYGNYQQ 387
GG P P P R Y GY G Y Q
Sbjct: 282 AGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQ 321
Score = 30.8 bits (68), Expect = 2.2
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPP--------------PPRSHNMPSDGMVGGGPPAPHMQ 120
+P M PGGMN+ PP NM GM+G GPP
Sbjct: 875 MPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGI 934
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS 155
N M G M P P G M N+S M +S
Sbjct: 935 NSMAG-MINPQGPPYSMGG----TMANNSAGMAAS 964
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 76.3 bits (186), Expect = 4e-14
Identities = 76/241 (31%), Positives = 97/241 (40%), Gaps = 44/241 (18%)
Query: 169 SSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQ 228
SS+ + + + + G+P G RP QP + P PP + P GG QG
Sbjct: 19 SSEDVSQEESLFLISGKPEGR---RPQGGNQPQRPP----PPPGKPQGPPPQGGNQSQGP 71
Query: 229 QPPMGMM-GQVNQGNHMMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGM 286
PP G G+ QG + Q Q PP P + + PP Q Q + PP+G
Sbjct: 72 PPPPGKPEGRPPQGGN---QSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGG 128
Query: 287 NQQYYPD-------------GNSQYGQ--QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQ 331
NQ + P GN G +GPPPQ+G + + P PG+
Sbjct: 129 NQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSP-----PGKP 183
Query: 332 QGYGPSQGGPGPQYPNYP-QGQGQQYGGYRPTQP---------GPPQPPQ-QRPYGYDQG 380
QG P Q G PQ P P + QG G P QP GPP PPQ RP QG
Sbjct: 184 QG-PPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQG 242
Query: 381 Q 381
Q
Sbjct: 243 Q 243
Score = 64.7 bits (156), Expect = 1e-10
Identities = 65/206 (31%), Positives = 73/206 (35%), Gaps = 27/206 (13%)
Query: 78 PPTQNMPMGP---GGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG-PNHM 133
PP P GP GG GPPPPP G G PP Q+Q PG P
Sbjct: 51 PPPPGKPQGPPPQGGNQSQGPPPPP--------GKPEGRPPQGGNQSQGPPPHPGKPERP 102
Query: 134 PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ------NQMTMSQGQPM 187
P Q G NQ T P G +H P P + NQ P
Sbjct: 103 PPQ--GGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG 160
Query: 188 GNYGPRP---NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM 244
GP P N S P Q PP Q+ N PQG + Q PP
Sbjct: 161 KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPP 220
Query: 245 MGQRQIPPYRPPQQG--PPQQYSGQE 268
G+ Q PP PP QG PP+ GQ+
Sbjct: 221 AGKPQGPP--PPPQGGRPPRPAQGQQ 244
Score = 50.8 bits (120), Expect = 2e-06
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 32/168 (19%)
Query: 70 NMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
N P PP + P G NQS PPPP G P P Q Q P
Sbjct: 108 NQSQGTPPPPGKPERPPPQGGNQSHRPPPPP-----------GKPERPPPQGGNQSQGPP 156
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
P+ +GP P + N + S+ + P G P Q + QG P
Sbjct: 157 PHPGKPEGPPPQEGNKSRSARSPPGKPQG---------------PPQQEGNKPQGPPP-- 199
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
P P QQP + PQG QG +PP GQ
Sbjct: 200 ----PGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQGQ 243
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 72.8 bits (177), Expect = 5e-13
Identities = 84/334 (25%), Positives = 112/334 (33%), Gaps = 45/334 (13%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPP---PRSHNMPSDGMVGGGP-----PAPHMQNQ-M 123
+L APP N P + + PPPP P ++ S +G P P+PH Q M
Sbjct: 284 NLPSAPPPANFPH----VTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGM 339
Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMP----------------SSSHGSMGGYNHSV 167
G PGP P P P+ L +SS P SSS S
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPF 399
Query: 168 PSSQSMP-VQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
P+SQ++P + + N P+ P+Q PP Y +
Sbjct: 400 PASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHP 459
Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPE-G 285
G PP G + + + + QQ QQ Q+ Q HG GPP G
Sbjct: 460 GPFPPS--TGAQSTAHPPVSTH----HHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPG 513
Query: 286 MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG--P 343
G+S + + YPP P P Q Y SQ GP P
Sbjct: 514 AFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPP----PHSQVSY--SQAGPNGPP 567
Query: 344 QYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGY 377
+ G Y + P P Q PQ PY +
Sbjct: 568 VSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPF 601
Score = 57.8 bits (138), Expect = 2e-08
Identities = 83/355 (23%), Positives = 111/355 (31%), Gaps = 58/355 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGG----PPAPHMQNQMNGQMPGP 130
P P Q P G GG+ SGPP P+ S G GG PP + +G P
Sbjct: 213 PPPHPQLYPGGTGGV-LSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAP 271
Query: 131 NHMPMQGP--------GPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
P P P N + + N+ P + + + S P + P+ +
Sbjct: 272 PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS 331
Query: 182 --SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQ----------YNMPQGGG------- 222
+ GQ MG P P P P H PP+ Y+
Sbjct: 332 PHAMGQGMGGLPPGPEKG--PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSS 389
Query: 223 ----------------QHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSG 266
Y PP + NQ Q +P QGPP
Sbjct: 390 SSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYT-QPSLPSQAVWSQGPPPP-PP 447
Query: 267 QEDYYGDQYSHGGQGPPE-GMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQ 325
+ +H G PP G +P ++ + Q Q QQ QQQQ+ G
Sbjct: 448 YGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNS 507
Query: 326 GYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ-PPQQRPYGYDQ 379
G P P +G G + +P G RP PGP PP Y Q
Sbjct: 508 GPPPPGAFPHPLEG--GSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQ 560
Score = 29.3 bits (64), Expect = 6.3
Identities = 36/136 (26%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPP 310
PP PP PP Q + + + P G + P + + Q PP
Sbjct: 162 PPLFPPSPQPPDSTPRQPEASFEPHP---SVTPTGYHAPMEPPTSRMF-------QAPPG 211
Query: 311 QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQP------ 364
PP Q YPG G GP GG P G G+Q+ PT P
Sbjct: 212 AP--PPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGG-PNG-GKQHP--PPTTPISVSSS 265
Query: 365 ----GPPQPPQQRPYG 376
PP P P G
Sbjct: 266 GASGAPPTKPPTTPVG 281
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 72.8 bits (177), Expect = 5e-13
Identities = 84/334 (25%), Positives = 112/334 (33%), Gaps = 45/334 (13%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPP---PRSHNMPSDGMVGGGP-----PAPHMQNQ-M 123
+L APP N P + + PPPP P ++ S +G P P+PH Q M
Sbjct: 284 NLPSAPPPANFPH----VTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGM 339
Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMP----------------SSSHGSMGGYNHSV 167
G PGP P P P+ L +SS P SSS S
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPF 399
Query: 168 PSSQSMP-VQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
P+SQ++P + + N P+ P+Q PP Y +
Sbjct: 400 PASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHP 459
Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPE-G 285
G PP G + + + + QQ QQ Q+ Q HG GPP G
Sbjct: 460 GPFPPS--TGAQSTAHPPVSTH----HHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPG 513
Query: 286 MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG--P 343
G+S + + YPP P P Q Y SQ GP P
Sbjct: 514 AFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPP----PHSQVSY--SQAGPNGPP 567
Query: 344 QYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGY 377
+ G Y + P P Q PQ PY +
Sbjct: 568 VSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPF 601
Score = 57.8 bits (138), Expect = 2e-08
Identities = 83/355 (23%), Positives = 111/355 (31%), Gaps = 58/355 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGG----PPAPHMQNQMNGQMPGP 130
P P Q P G GG+ SGPP P+ S G GG PP + +G P
Sbjct: 213 PPPHPQLYPGGTGGV-LSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAP 271
Query: 131 NHMPMQGP--------GPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
P P P N + + N+ P + + + S P + P+ +
Sbjct: 272 PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS 331
Query: 182 --SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQ----------YNMPQGGG------- 222
+ GQ MG P P P P H PP+ Y+
Sbjct: 332 PHAMGQGMGGLPPGPEKG--PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSS 389
Query: 223 ----------------QHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSG 266
Y PP + NQ Q +P QGPP
Sbjct: 390 SSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYT-QPSLPSQAVWSQGPPPP-PP 447
Query: 267 QEDYYGDQYSHGGQGPPE-GMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQ 325
+ +H G PP G +P ++ + Q Q QQ QQQQ+ G
Sbjct: 448 YGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNS 507
Query: 326 GYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ-PPQQRPYGYDQ 379
G P P +G G + +P G RP PGP PP Y Q
Sbjct: 508 GPPPPGAFPHPLEG--GSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQ 560
Score = 29.3 bits (64), Expect = 6.3
Identities = 36/136 (26%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPP 310
PP PP PP Q + + + P G + P + + Q PP
Sbjct: 162 PPLFPPSPQPPDSTPRQPEASFEPHP---SVTPTGYHAPMEPPTSRMF-------QAPPG 211
Query: 311 QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQP------ 364
PP Q YPG G GP GG P G G+Q+ PT P
Sbjct: 212 AP--PPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGG-PNG-GKQHP--PPTTPISVSSS 265
Query: 365 ----GPPQPPQQRPYG 376
PP P P G
Sbjct: 266 GASGAPPTKPPTTPVG 281
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 70.5 bits (171), Expect = 2e-12
Identities = 90/309 (29%), Positives = 111/309 (35%), Gaps = 36/309 (11%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGP----NHMPMQG-- 137
P PG M GP P P P G G P+P + M G PGP + MP G
Sbjct: 4 PTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTMGST 63
Query: 138 ----PGPNQLNMTNSSMN----MPSSSHGSMGGYNHSVPSSQSMPVQNQMTM-SQG---- 184
G +Q++ ++ + GSM G P P Q+ M SQG
Sbjct: 64 DFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSP 123
Query: 185 --QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
P+G P S GP Q PPSQ + G Q QP G
Sbjct: 124 HPSPLG--APEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAM--SQPNRGPSPFSPVQL 179
Query: 243 HMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQ 302
H + + QI Y+ +G P + Q G + G Q + QQ Q QQQ
Sbjct: 180 HQL-RAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238
Query: 303 DAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG-PQYPNYPQGQGQQYGGYRP 361
Q P PQ QQQQ P Y + G GP GP PQ P G+ P
Sbjct: 239 PQQQPPQPQ----TQQQQQPALVNY-NRPSGPGPELSGPSTPQKLPVPAPGGRP----SP 289
Query: 362 TQPGPPQPP 370
P QPP
Sbjct: 290 APPAAAQPP 298
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 21/165 (12%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV------GGGPPAPHMQNQMNGQ 126
S L AP + PM GG PP +P D G P +P +Q+ Q
Sbjct: 126 SPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQ 185
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
+ + P P L + ++ G Q Q Q Q Q
Sbjct: 186 ILAYKMLARGQPLPETLQLAVQGKR-------TLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238
Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP 231
P+P Q QQP YN P G G G P
Sbjct: 239 PQQQPPQPQTQQQ--------QQPALVNYNRPSGPGPELSGPSTP 275
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 70.5 bits (171), Expect = 2e-12
Identities = 90/309 (29%), Positives = 111/309 (35%), Gaps = 36/309 (11%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGP----NHMPMQG-- 137
P PG M GP P P P G G P+P + M G PGP + MP G
Sbjct: 4 PTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTMGST 63
Query: 138 ----PGPNQLNMTNSSMN----MPSSSHGSMGGYNHSVPSSQSMPVQNQMTM-SQG---- 184
G +Q++ ++ + GSM G P P Q+ M SQG
Sbjct: 64 DFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSP 123
Query: 185 --QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
P+G P S GP Q PPSQ + G Q QP G
Sbjct: 124 HPSPLG--APEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAM--SQPNRGPSPFSPVQL 179
Query: 243 HMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQ 302
H + + QI Y+ +G P + Q G + G Q + QQ Q QQQ
Sbjct: 180 HQL-RAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238
Query: 303 DAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG-PQYPNYPQGQGQQYGGYRP 361
Q P PQ QQQQ P Y + G GP GP PQ P G+ P
Sbjct: 239 PQQQPPQPQ----TQQQQQPALVNY-NRPSGPGPELSGPSTPQKLPVPAPGGRP----SP 289
Query: 362 TQPGPPQPP 370
P QPP
Sbjct: 290 APPAAAQPP 298
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 21/165 (12%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV------GGGPPAPHMQNQMNGQ 126
S L AP + PM GG PP +P D G P +P +Q+ Q
Sbjct: 126 SPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQ 185
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
+ + P P L + ++ G Q Q Q Q Q
Sbjct: 186 ILAYKMLARGQPLPETLQLAVQGKR-------TLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238
Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP 231
P+P Q QQP YN P G G G P
Sbjct: 239 PQQQPPQPQTQQQ--------QQPALVNYNRPSGPGPELSGPSTP 275
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 69.7 bits (169), Expect = 4e-12
Identities = 69/190 (36%), Positives = 80/190 (42%), Gaps = 38/190 (20%)
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQI 250
GP P +P QGP PP + P GG QG PP G QG+ R
Sbjct: 38 GPSPQGGNKP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS- 92
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHGG--QGPP-EGMNQQYYPDGNSQYGQQQDAYQG 307
PP +P QGPP Q GG QGPP +G N+ P G G+ Q G
Sbjct: 93 PPGKP--QGPPPQ--------------GGKPQGPPPQGGNK---PQGPPPPGKPQ----G 129
Query: 308 PPPQQGYPPQQQQYP-GQQGYPGQQQGYGPS----QGGPGPQYPNYPQGQGQQYGGYRPT 362
PP Q G Q + P G+ P QQ+G P G PQ P P GQ G RP
Sbjct: 130 PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPA-GQPQGPPRPP 188
Query: 363 QPG-PPQPPQ 371
Q G P +PPQ
Sbjct: 189 QGGRPSRPPQ 198
Score = 68.2 bits (165), Expect = 1e-11
Identities = 70/183 (38%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 208 QQPPSQQYNMPQG----GGQHYQGQQPPMGM-MGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
++ PS PQG GG QG PP G G QG + Q PP +P QGPP
Sbjct: 26 EESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKP-QGPPPPGKP--QGPPP 82
Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP 322
Q GD+ S + PP G Q P G QGPPPQ G PQ P
Sbjct: 83 Q--------GDK-SRSPRSPP-GKPQGPPPQGGKP--------QGPPPQGGNKPQGPPPP 124
Query: 323 GQ-QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYG----GYRPTQPGPPQPPQQRPYGY 377
G+ QG P Q G SQ P P PQG QQ G G P G PQ PQ P G
Sbjct: 125 GKPQGPPAQ--GGSKSQSARSP--PGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ 180
Query: 378 DQG 380
QG
Sbjct: 181 PQG 183
Score = 57.4 bits (137), Expect = 2e-08
Identities = 63/223 (28%), Positives = 79/223 (35%), Gaps = 44/223 (19%)
Query: 53 MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGP---GGMNQSGPPPPPRSHN--MPSD 107
+L L+ L++ + N+++ P GP GG GPPPPP P
Sbjct: 5 LLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQG 64
Query: 108 GMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHG--SMGGYNH 165
G GPP P G+ GP P Q + + S + P G GG
Sbjct: 65 GNKPQGPPPP-------GKPQGP---------PPQGDKSRSPRSPPGKPQGPPPQGGKPQ 108
Query: 166 SVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQG----- 220
P Q G+P G + S P Q PP Q+ N PQG
Sbjct: 109 GPPPQGGNKPQG--PPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA 166
Query: 221 GGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQ 263
GG Q Q PP GQ Q PP RPPQ G P +
Sbjct: 167 GGNPQQPQAPP-------------AGQPQGPP-RPPQGGRPSR 195
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 67.8 bits (164), Expect = 2e-11
Identities = 71/227 (31%), Positives = 80/227 (35%), Gaps = 44/227 (19%)
Query: 162 GYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSM-QPNQGPMMHQQPPSQQYNMPQG 220
G + PS ++P+ Q + P P P QP GP Q PP QQ PQG
Sbjct: 431 GSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ-RQGPPLQQRPPPQG 489
Query: 221 GGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQ-----GPPQQYSGQEDYYGDQY 275
QH G PP G + QR P PQQ PP Q G++ +
Sbjct: 490 Q-QHLSGLGPPAGSP---------LPQRLPSPTSAPQQPASQAAPPTQGQGRQS----RP 535
Query: 276 SHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQ------GPPPQQGYPPQQQQYPGQQGYPG 329
GG G P P Q G Q Q PP G PP G
Sbjct: 536 VAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPP------------G 583
Query: 330 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYG 376
QQ GP Q PGP P Q Q G T GPP Q RP G
Sbjct: 584 GQQRQGPPQKPPGPAGPT---RQASQAGPVPRT--GPPTTQQPRPSG 625
Score = 56.6 bits (135), Expect = 4e-08
Identities = 82/312 (26%), Positives = 99/312 (31%), Gaps = 88/312 (28%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQG 137
P +P+G Q P PP P GGPP P G
Sbjct: 437 PSPGALPLGRQTSQQ--PAGPPAQQRPPPQ----GGPPQP-------------------G 471
Query: 138 PGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYGPRPNM 196
PGP + P Q P Q Q +S G P G+ P P
Sbjct: 472 PGPQR----------------------QGPPLQQRPPPQGQQHLSGLGPPAGS--PLPQR 507
Query: 197 SMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPP 256
P P QQP SQ QG G+ +P G G P RPP
Sbjct: 508 LPSPTSAP---QQPASQAAPPTQGQGRQ---SRPVAG------------GPGAPPAARPP 549
Query: 257 QQGPPQQYSG------QEDYYGDQYSHGGQGPPEGMNQQYYPD-GNSQYGQQQDAYQ-GP 308
PQ+ +G Q G PP G +Q P G + A Q GP
Sbjct: 550 ASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGP 609
Query: 309 PPQQGYPPQQQ---QYPGQQGYPGQQQGYGPSQGGP--------GPQYPNYPQGQGQQYG 357
P+ G P QQ PG G P Q PSQ P GP +P + Q
Sbjct: 610 VPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLT-N 668
Query: 358 GYRPTQPGPPQP 369
+ +P PP+P
Sbjct: 669 AFNLPEPAPPRP 680
Score = 51.6 bits (122), Expect = 1e-06
Identities = 48/130 (36%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 267 QEDYYGDQYSHGGQGPPEG---MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPG 323
Q D + SHG Q P G + +Q QQ+ QG PPQ G PQ+Q P
Sbjct: 423 QRDASPGRGSHG-QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPL 481
Query: 324 QQGYPGQQQ----GYGPSQGGPGPQ-------YPNYP--------QGQGQQYGGYRPTQP 364
QQ P Q Q G GP G P PQ P P QGQG+Q RP
Sbjct: 482 QQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQ---SRPVAG 538
Query: 365 GPPQPPQQRP 374
GP PP RP
Sbjct: 539 GPGAPPAARP 548
Score = 38.5 bits (88), Expect = 0.010
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 33/148 (22%)
Query: 77 APPTQNMPMGPGGMNQSGP-----------PPPPRSHNMPSDGMVGGGPP-------APH 118
APP P P Q+GP P PP++ P G GPP P
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPT 601
Query: 119 MQNQMNGQMP--GP--NHMPM-QGPG----PNQLNMTNSSMNMPSSSHGSMGGYNHSVPS 169
Q G +P GP P GPG P S ++P + + GG H
Sbjct: 602 RQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHP-QL 660
Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMS 197
++S + N + + P PRP++S
Sbjct: 661 NKSQSLTNAFNLPEPAP-----PRPSLS 683
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 67.8 bits (164), Expect = 2e-11
Identities = 71/227 (31%), Positives = 80/227 (35%), Gaps = 44/227 (19%)
Query: 162 GYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSM-QPNQGPMMHQQPPSQQYNMPQG 220
G + PS ++P+ Q + P P P QP GP Q PP QQ PQG
Sbjct: 431 GSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ-RQGPPLQQRPPPQG 489
Query: 221 GGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQ-----GPPQQYSGQEDYYGDQY 275
QH G PP G + QR P PQQ PP Q G++ +
Sbjct: 490 Q-QHLSGLGPPAGSP---------LPQRLPSPTSAPQQPASQAAPPTQGQGRQS----RP 535
Query: 276 SHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQ------GPPPQQGYPPQQQQYPGQQGYPG 329
GG G P P Q G Q Q PP G PP G
Sbjct: 536 VAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPP------------G 583
Query: 330 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYG 376
QQ GP Q PGP P Q Q G T GPP Q RP G
Sbjct: 584 GQQRQGPPQKPPGPAGPT---RQASQAGPVPRT--GPPTTQQPRPSG 625
Score = 51.6 bits (122), Expect = 1e-06
Identities = 48/130 (36%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 267 QEDYYGDQYSHGGQGPPEG---MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPG 323
Q D + SHG Q P G + +Q QQ+ QG PPQ G PQ+Q P
Sbjct: 423 QRDASPGRGSHG-QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPL 481
Query: 324 QQGYPGQQQ----GYGPSQGGPGPQ-------YPNYP--------QGQGQQYGGYRPTQP 364
QQ P Q Q G GP G P PQ P P QGQG+Q RP
Sbjct: 482 QQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQ---SRPVAG 538
Query: 365 GPPQPPQQRP 374
GP PP RP
Sbjct: 539 GPGAPPAARP 548
Score = 50.8 bits (120), Expect = 2e-06
Identities = 75/278 (26%), Positives = 87/278 (31%), Gaps = 79/278 (28%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQG 137
P +P+G Q P PP P GGPP P G
Sbjct: 437 PSPGALPLGRQTSQQ--PAGPPAQQRPPPQ----GGPPQP-------------------G 471
Query: 138 PGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYGPRPNM 196
PGP + P Q P Q Q +S G P G+ P P
Sbjct: 472 PGPQR----------------------QGPPLQQRPPPQGQQHLSGLGPPAGS--PLPQR 507
Query: 197 SMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPP 256
P P QQP SQ QG G+ +P G G P RPP
Sbjct: 508 LPSPTSAP---QQPASQAAPPTQGQGRQ---SRPVAG------------GPGAPPAARPP 549
Query: 257 QQGPPQQYSG------QEDYYGDQYSHGGQGPPEGMNQQYYPD-GNSQYGQQQDAYQ-GP 308
PQ+ +G Q G PP G +Q P G + A Q GP
Sbjct: 550 ASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGP 609
Query: 309 PPQQGYPPQQQ---QYPGQQGYPGQQQGYGPSQGGPGP 343
P+ G P QQ PG G P Q PSQ P P
Sbjct: 610 VPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPP 647
Score = 48.1 bits (113), Expect = 1e-05
Identities = 71/273 (26%), Positives = 88/273 (32%), Gaps = 67/273 (24%)
Query: 78 PPTQNMPMGPGGMNQSGPPP----PPRSHNMPSDG---MVGGGPPAPHMQNQMNGQMPGP 130
PP Q P GG Q GP P PP P G + G GPPA + + ++P P
Sbjct: 455 PPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA---GSPLPQRLPSP 511
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
P Q P+SQ+ P Q Q +P+
Sbjct: 512 TSAPQQ-------------------------------PASQAAP-PTQGQGRQSRPVAG- 538
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQI 250
GP + +P P P +Q PQ Q P G G QRQ
Sbjct: 539 GPGAPPAARPPASP-----SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQ----QRQG 589
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEG--MNQQYYPDGNSQYGQQQDAYQGP 308
PP +PP P + Q S G P G QQ P G G+ +
Sbjct: 590 PPQKPPGPAGPTR----------QASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQL-AQ 638
Query: 309 PPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGP 341
P Q PP G G P Q P+Q P
Sbjct: 639 KPSQDVPPPATAAAG--GPPHPQLKASPAQAQP 669
Score = 37.7 bits (86), Expect = 0.018
Identities = 32/130 (24%), Positives = 43/130 (33%), Gaps = 9/130 (6%)
Query: 77 APPTQNMPMGPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQNQMNGQMPGPNHMP 134
APP P P Q+GPP R ++ P+ G PP + + PGP
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPT 601
Query: 135 MQG--PGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGP 192
Q GP ++ S G G + S V T + G P P
Sbjct: 602 RQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGP-----P 656
Query: 193 RPNMSMQPNQ 202
P + P Q
Sbjct: 657 HPQLKASPAQ 666
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 66.2 bits (160), Expect = 5e-11
Identities = 99/364 (27%), Positives = 120/364 (32%), Gaps = 62/364 (17%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGG-----GPPAPHMQNQMNGQMPGP 130
PA T++ MGPG G PP + P+ G + G + QNQ P P
Sbjct: 1795 PATKTEDYGMGPGRSGPYGVTVPPDLLHHPNPGSITHLNYRQGSIGLYTQNQ-----PLP 1849
Query: 131 NHMPMQGP-GPNQLNMTN--SSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
P P P +L M + P +M G PSS V Q QP
Sbjct: 1850 AGGPRVDPYRPVRLPMQKLPTRPTYPGVLPTTMTGVMGLEPSSYKTSVYRQQ-----QPA 1904
Query: 188 GNYGPRPNMSMQPNQGPM----MHQQPPSQQYNMPQGGG-----------QHY--QGQQP 230
G R +Q +QG + +HQ PS Y + G QH G
Sbjct: 1905 VPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQTSQGYTPYVSHVGLQQHTGPAGTMV 1964
Query: 231 PMGMMGQVNQGNH-MMGQRQIPPYRPPQQGPPQQYSGQEDYYG------DQYSH------ 277
P Q Q H + P R QQ P Q YG ++SH
Sbjct: 1965 PPSYSSQPYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQQT 2024
Query: 278 ---------GGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQY----PGQ 324
QG G+ Q QQQ Q QQ QQQQY Q
Sbjct: 2025 PMISTMTPMSAQGVQAGVRSTAILPEQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQ 2084
Query: 325 QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQP-PQQRPYGYDQGQYG 383
Q QQQ Q Q Q Q QQ+ + Q PPQP PQ +P QG
Sbjct: 2085 QQILRQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQ 2144
Query: 384 NYQQ 387
QQ
Sbjct: 2145 TQQQ 2148
Score = 38.1 bits (87), Expect = 0.014
Identities = 50/194 (25%), Positives = 61/194 (31%), Gaps = 26/194 (13%)
Query: 140 PNQLNMTNSSMNMPSSS-HGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSM 198
P ++ T PS H Y H + S+Q Q T+ Q + P +
Sbjct: 1982 PTLVDPTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQ---TLQQTPMISTMTPMSAQGV 2038
Query: 199 QPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQ 258
Q G P QQ Q Q Q QQ Q Q H+ Q+Q R QQ
Sbjct: 2039 QA--GVRSTAILPEQQQQQQQ---QQQQQQQQQQQQQQQQQQQYHIRQQQQQQILRQQQQ 2093
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQ 318
QQ Q+ QQ Q+ QQQ PP Q Q
Sbjct: 2094 QQQQQQQQQQQ-----------------QQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQ 2136
Query: 319 QQYPGQQGYPGQQQ 332
Q G Q QQQ
Sbjct: 2137 FQRQGLQQTQQQQQ 2150
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 65.9 bits (159), Expect = 6e-11
Identities = 68/208 (32%), Positives = 73/208 (35%), Gaps = 22/208 (10%)
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM 244
Q +YG P QP QG + Q SQ Y G Q Y G G
Sbjct: 9 QATQSYGAYPT---QPGQG---YSQQSSQPY-----GQQSYSGYSQSTDTSGYGQSSYSS 57
Query: 245 MGQRQIPPYRPPQQGPPQQYSGQEDY---YGDQYSHGGQGPPEGMNQQYYPDGNS-QYGQ 300
GQ Q Y Q PQ Y Y Q S+G Q G QQ P S YG
Sbjct: 58 YGQSQNTGYGT--QSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGS 115
Query: 301 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQG-GPGPQYPNYPQGQGQQYGGY 359
+ PQ G QQ Y GQQ GQQQ Y P QG G QY + G G GG
Sbjct: 116 SSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGG 175
Query: 360 RPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
Q G G YGN Q
Sbjct: 176 NYGQ----DQSSMSSGGGSGGGYGNQDQ 199
Score = 65.1 bits (157), Expect = 1e-10
Identities = 73/266 (27%), Positives = 93/266 (34%), Gaps = 29/266 (10%)
Query: 146 TNSSMNMPSSSHGS---MGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQ 202
+N + S+G+ G +S SSQ Q+ SQ YG S +Q
Sbjct: 3 SNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQ 62
Query: 203 GPMMHQQPPSQQYNMPQGGG-----QHYQGQQPPMGMMGQVNQGNHMMGQ----RQIPPY 253
Q Q Y G G Q GQQ GQ + G Q Y
Sbjct: 63 NTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSY 122
Query: 254 RPPQQGPPQQ---YSGQEDYYGDQYSHGGQGPPEGMNQQYYPD----------GNSQYGQ 300
PQ G Q Y GQ+ YG Q S+ PP+G QQ + G YGQ
Sbjct: 123 GQPQSGSYSQQPSYGGQQQSYGQQQSYN---PPQGYGQQNQYNSSSGGGGGGGGGGNYGQ 179
Query: 301 QQDAYQ-GPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGY 359
Q + G GY Q Q G G GQQ G +GG G G + GGY
Sbjct: 180 DQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGY 239
Query: 360 RPTQPGPPQPPQQRPYGYDQGQYGNY 385
P G + + G D+G + +
Sbjct: 240 EPRGRGGGRGGRGGMGGSDRGGFNKF 265
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 65.5 bits (158), Expect = 8e-11
Identities = 58/136 (42%), Positives = 64/136 (47%), Gaps = 29/136 (21%)
Query: 257 QQGPPQQYSGQEDYYGDQYSHGG--QGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGY 314
+QGPP + GD + G QGPP+ Q GQQQ QGPPP QG
Sbjct: 46 RQGPPLGGQQSQPSAGDGNQNDGPQQGPPQ------------QGGQQQ---QGPPPPQGK 90
Query: 315 PPQQQQYPGQQGYPGQQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GYRPTQPGPPQ 368
P Q P Q G+P QG GP Q G P+ P PQG QQ G G P PG PQ
Sbjct: 91 P---QGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQ 147
Query: 369 -PPQQ--RPYGYDQGQ 381
PP Q RP G QGQ
Sbjct: 148 GPPPQGGRPQGPPQGQ 163
Score = 56.6 bits (135), Expect = 4e-08
Identities = 54/147 (36%), Positives = 64/147 (43%), Gaps = 30/147 (20%)
Query: 228 QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
Q PP+G GQ +Q + G + PQQGPPQQ Q+ G PP+G
Sbjct: 47 QGPPLG--GQQSQPSAGDGNQN----DGPQQGPPQQGGQQQQ---------GPPPPQGK- 90
Query: 288 QQYYPDGNSQYGQQQDAYQGPP---PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQ 344
P G Q G QG P PQQG P+ + G+ P QQ G+ Q GP P
Sbjct: 91 ----PQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPR--GRPQGPPQQGGH---QQGPPPP 141
Query: 345 YPNYPQGQGQQYGGYRPTQPGPPQPPQ 371
P PQG Q G RP P Q PQ
Sbjct: 142 PPGKPQGPPPQ--GGRPQGPPQGQSPQ 166
Score = 54.7 bits (130), Expect = 1e-07
Identities = 65/187 (34%), Positives = 70/187 (37%), Gaps = 69/187 (36%)
Query: 171 QSMPVQNQMTM-SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
Q P+ Q + S G N GP+ QGP PQ GGQ QG
Sbjct: 47 QGPPLGGQQSQPSAGDGNQNDGPQ--------QGP-------------PQQGGQQQQGPP 85
Query: 230 PPMGM-MGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
PP G G QG H PP + QGPPQQ G PP G
Sbjct: 86 PPQGKPQGPPQQGGHP------PPPQGRPQGPPQQ-------------GGHPRPPRGR-- 124
Query: 289 QYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNY 348
P G Q G Q QGPPP PP PG+ QG P QGG PQ P
Sbjct: 125 ---PQGPPQQGGHQ---QGPPP----PP-----------PGKPQG-PPPQGG-RPQGP-- 159
Query: 349 PQGQGQQ 355
PQGQ Q
Sbjct: 160 PQGQSPQ 166
Score = 44.3 bits (103), Expect = 2e-04
Identities = 53/180 (29%), Positives = 60/180 (33%), Gaps = 64/180 (35%)
Query: 113 GPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQS 172
GPP Q+Q + N P QGP P Q GG P
Sbjct: 48 GPPLGGQQSQPSAGDGNQNDGPQQGP-PQQ------------------GGQQQQGPPP-- 86
Query: 173 MPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
QG+P G P QG H PP PQG Q +PP
Sbjct: 87 ---------PQGKPQG----------PPQQGG--HPPPPQ---GRPQGPPQQGGHPRPPR 122
Query: 233 GM-MGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG--QGPPEGMNQQ 289
G G QG H G PP +P QGPP Q GG QGPP+G + Q
Sbjct: 123 GRPQGPPQQGGHQQGPPPPPPGKP--QGPPPQ--------------GGRPQGPPQGQSPQ 166
Score = 34.7 bits (78), Expect = 0.15
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
PP Q P GP Q G PPPP+ P GG P P Q G GP
Sbjct: 85 PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140
Query: 133 MP---MQGPGP 140
P QGP P
Sbjct: 141 PPPGKPQGPPP 151
Score = 33.1 bits (74), Expect = 0.44
Identities = 32/112 (28%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 66 DSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ--- 122
D NQN P Q P G Q PPP + P GG PP P + Q
Sbjct: 62 DGNQN------DGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPP 112
Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
G P P QGP + P G GG P QS
Sbjct: 113 QQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 65.5 bits (158), Expect = 8e-11
Identities = 58/136 (42%), Positives = 64/136 (47%), Gaps = 29/136 (21%)
Query: 257 QQGPPQQYSGQEDYYGDQYSHGG--QGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGY 314
+QGPP + GD + G QGPP+ Q GQQQ QGPPP QG
Sbjct: 46 RQGPPLGGQQSQPSAGDGNQNDGPQQGPPQ------------QGGQQQ---QGPPPPQGK 90
Query: 315 PPQQQQYPGQQGYPGQQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GYRPTQPGPPQ 368
P Q P Q G+P QG GP Q G P+ P PQG QQ G G P PG PQ
Sbjct: 91 P---QGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQ 147
Query: 369 -PPQQ--RPYGYDQGQ 381
PP Q RP G QGQ
Sbjct: 148 GPPPQGGRPQGPPQGQ 163
Score = 56.6 bits (135), Expect = 4e-08
Identities = 54/147 (36%), Positives = 64/147 (43%), Gaps = 30/147 (20%)
Query: 228 QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
Q PP+G GQ +Q + G + PQQGPPQQ Q+ G PP+G
Sbjct: 47 QGPPLG--GQQSQPSAGDGNQN----DGPQQGPPQQGGQQQQ---------GPPPPQGK- 90
Query: 288 QQYYPDGNSQYGQQQDAYQGPP---PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQ 344
P G Q G QG P PQQG P+ + G+ P QQ G+ Q GP P
Sbjct: 91 ----PQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPR--GRPQGPPQQGGH---QQGPPPP 141
Query: 345 YPNYPQGQGQQYGGYRPTQPGPPQPPQ 371
P PQG Q G RP P Q PQ
Sbjct: 142 PPGKPQGPPPQ--GGRPQGPPQGQSPQ 166
Score = 54.7 bits (130), Expect = 1e-07
Identities = 65/187 (34%), Positives = 70/187 (37%), Gaps = 69/187 (36%)
Query: 171 QSMPVQNQMTM-SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
Q P+ Q + S G N GP+ QGP PQ GGQ QG
Sbjct: 47 QGPPLGGQQSQPSAGDGNQNDGPQ--------QGP-------------PQQGGQQQQGPP 85
Query: 230 PPMGM-MGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
PP G G QG H PP + QGPPQQ G PP G
Sbjct: 86 PPQGKPQGPPQQGGHP------PPPQGRPQGPPQQ-------------GGHPRPPRGR-- 124
Query: 289 QYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNY 348
P G Q G Q QGPPP PP PG+ QG P QGG PQ P
Sbjct: 125 ---PQGPPQQGGHQ---QGPPP----PP-----------PGKPQG-PPPQGG-RPQGP-- 159
Query: 349 PQGQGQQ 355
PQGQ Q
Sbjct: 160 PQGQSPQ 166
Score = 44.3 bits (103), Expect = 2e-04
Identities = 53/180 (29%), Positives = 60/180 (33%), Gaps = 64/180 (35%)
Query: 113 GPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQS 172
GPP Q+Q + N P QGP P Q GG P
Sbjct: 48 GPPLGGQQSQPSAGDGNQNDGPQQGP-PQQ------------------GGQQQQGPPP-- 86
Query: 173 MPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
QG+P G P QG H PP PQG Q +PP
Sbjct: 87 ---------PQGKPQG----------PPQQGG--HPPPPQ---GRPQGPPQQGGHPRPPR 122
Query: 233 GM-MGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG--QGPPEGMNQQ 289
G G QG H G PP +P QGPP Q GG QGPP+G + Q
Sbjct: 123 GRPQGPPQQGGHQQGPPPPPPGKP--QGPPPQ--------------GGRPQGPPQGQSPQ 166
Score = 34.7 bits (78), Expect = 0.15
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
PP Q P GP Q G PPPP+ P GG P P Q G GP
Sbjct: 85 PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140
Query: 133 MP---MQGPGP 140
P QGP P
Sbjct: 141 PPPGKPQGPPP 151
Score = 33.1 bits (74), Expect = 0.44
Identities = 32/112 (28%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 66 DSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ--- 122
D NQN P Q P G Q PPP + P GG PP P + Q
Sbjct: 62 DGNQN------DGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPP 112
Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
G P P QGP + P G GG P QS
Sbjct: 113 QQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 64.7 bits (156), Expect = 1e-10
Identities = 56/121 (46%), Positives = 58/121 (47%), Gaps = 23/121 (19%)
Query: 280 QGPPEGMNQQYYP---DGNSQYGQQQ-------DAYQGPPPQQGYPPQQQQYPGQQGYPG 329
QGPP G QQ P DGN G QQ QGPPP QG P Q P Q G+P
Sbjct: 47 QGPPLG-GQQSQPSAGDGNQDDGPQQGPPQQGGQQQQGPPPPQGKP---QGPPQQGGHPP 102
Query: 330 QQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GYRPTQPGPPQ-PPQQ--RPYGYDQG 380
QG GP Q G P+ P PQG QQ G G P PG PQ PP Q RP G QG
Sbjct: 103 PPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQG 162
Query: 381 Q 381
Q
Sbjct: 163 Q 163
Score = 61.2 bits (147), Expect = 1e-09
Identities = 64/179 (35%), Positives = 68/179 (37%), Gaps = 65/179 (36%)
Query: 183 QGQPMGNYGPRP-----NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGM-MG 236
QG P+G +P N P QGP PQ GGQ QG PP G G
Sbjct: 47 QGPPLGGQQSQPSAGDGNQDDGPQQGP-------------PQQGGQQQQGPPPPQGKPQG 93
Query: 237 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNS 296
QG H PP + QGPPQQ G PP G P G
Sbjct: 94 PPQQGGHP------PPPQGRPQGPPQQ-------------GGHPRPPRGR-----PQGPP 129
Query: 297 QYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQ 355
Q G Q QGPPP PP PG+ QG P QGG PQ P PQGQ Q
Sbjct: 130 QQGGHQ---QGPPP----PP-----------PGKPQG-PPPQGG-RPQGP--PQGQSPQ 166
Score = 59.7 bits (143), Expect = 4e-09
Identities = 57/151 (37%), Positives = 66/151 (43%), Gaps = 38/151 (25%)
Query: 228 QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
Q PP+G GQ +Q + G + PQQGPPQQ Q+ QGPP
Sbjct: 47 QGPPLG--GQQSQPSAGDGNQD----DGPQQGPPQQGGQQQ-----------QGPPP--- 86
Query: 288 QQYYPDGNSQYGQQQDAYQGPPPQQGYP---PQQQQYP----GQQGYPGQQQGYGPSQGG 340
P G Q QQ + PPP QG P PQQ +P G+ P QQ G+ Q G
Sbjct: 87 ----PQGKPQGPPQQGGH--PPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGH---QQG 137
Query: 341 PGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 371
P P P PQG Q G RP P Q PQ
Sbjct: 138 PPPPPPGKPQGPPPQGG--RPQGPPQGQSPQ 166
Score = 34.7 bits (78), Expect = 0.15
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
PP Q P GP Q G PPPP+ P GG P P Q G GP
Sbjct: 85 PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140
Query: 133 MP---MQGPGP 140
P QGP P
Sbjct: 141 PPPGKPQGPPP 151
Score = 32.7 bits (73), Expect = 0.57
Identities = 25/67 (37%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRS--HNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PP Q P GP Q G P PPR P G GPP P Q P P
Sbjct: 102 PPPQGRPQGP--PQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKP---QGPPPQGGRP 156
Query: 136 QGPGPNQ 142
QGP Q
Sbjct: 157 QGPPQGQ 163
Score = 32.3 bits (72), Expect = 0.74
Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ---MNGQMPGPNHMPM 135
P Q P G Q PPP + P GG PP P + Q G P P
Sbjct: 69 PQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPPQQGGHPRPPRGRP 125
Query: 136 QGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
QGP + P G GG P QS
Sbjct: 126 QGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164
Score = 32.0 bits (71), Expect = 0.97
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 76 PAPPTQNMPMGPG--GMNQSGPPPPP--RSHNMPSDGMVGGGPP 115
P PP + P GP G +Q GPPPPP + P G GPP
Sbjct: 118 PRPP-RGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPP 160
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 64.3 bits (155), Expect = 2e-10
Identities = 88/334 (26%), Positives = 109/334 (32%), Gaps = 62/334 (18%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
P P P P+S S V G P + +GQM PMQG + +
Sbjct: 1122 PPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMT-----PMQGGRSSTI 1176
Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQM-----------------TMSQGQP 186
++ + ++ SS + P Q M + + M +P
Sbjct: 1177 SVHDPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEP 1236
Query: 187 MGNYGPRPNMSMQP--NQGPM--MHQQPPSQQYNMPQGG---------GQHYQGQQPPMG 233
G PN SMQ NQ P M Q+ P G GQ Y GQ PP G
Sbjct: 1237 FMTQGQMPNSSMQDMYNQSPSGAMSNLGMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSG 1296
Query: 234 MMG-----------QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
Q N HM G P R QYS Q+ +QY GP
Sbjct: 1297 QPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYSSQQQEMYNQYGGSYSGP 1356
Query: 283 PEGMNQQYYPDGNSQYGQQQDAYQGPPPQQ--GYPPQQQQYPGQ-QGYPGQQQGYGPSQG 339
Q YP Y ++ QGP Q G PPQ P Q G QQ ++
Sbjct: 1357 DRRPIQGQYP-----YPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEGPQQNMWAARN 1411
Query: 340 GPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQR 373
YP Q GG PTQ PP P R
Sbjct: 1412 D-----MPYPYQNRQGPGG--PTQ-APPYPGMNR 1437
Score = 60.8 bits (146), Expect = 2e-09
Identities = 77/269 (28%), Positives = 99/269 (36%), Gaps = 53/269 (19%)
Query: 126 QMPGP-NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQN--QMTMS 182
Q P P N +QGP Q +NS +P S P Q P+Q T+S
Sbjct: 1121 QPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPA---STPHGQMTPMQGGRSSTIS 1177
Query: 183 QGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQH-YQGQQPPMGMMGQV-NQ 240
P + S P + M P Q +MP G+ Y+ + P G M +V
Sbjct: 1178 VHDPFSDVSD----SSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGS 1233
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ 300
M Q Q+P S +D Y Q P M+ N GQ
Sbjct: 1234 SEPFMTQGQMPN------------SSMQDMYN-------QSPSGAMS-------NLGMGQ 1267
Query: 301 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR 360
+Q G + + P QQYPGQ G P Q YG Q G PQ PNY + YG
Sbjct: 1268 RQQFPYGASYDRRHEPYGQQYPGQ-GPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYG--- 1323
Query: 361 PTQPGPPQPPQQRPYG--YDQGQYGNYQQ 387
PP +R G Y+ QY + QQ
Sbjct: 1324 --------PPAKRHEGDMYNM-QYSSQQQ 1343
Score = 56.2 bits (134), Expect = 5e-08
Identities = 78/308 (25%), Positives = 108/308 (35%), Gaps = 42/308 (13%)
Query: 67 SNQNMQS-LLPA--PPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGGPPAPHMQNQ 122
SNQ+ + PA P +Q P PG ++S P MP + G + G P M Q
Sbjct: 688 SNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMA-Q 746
Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS 182
Q GP+ P PG Q++ SS +SS G Y + ++
Sbjct: 747 YGPQQTGPSMSPHPSPG-GQMHAGISSFQQSNSS----GTYGPQMSQYGPQGNYSRPPAY 801
Query: 183 QGQPMGNY-GPRPNMSMQPNQGPMMHQQPPSQQY------NMPQGGGQHYQGQQPPMGMM 235
G P +Y GP P M + N MH Q PSQ MP G Q+ +P G M
Sbjct: 802 SGVPSASYSGPGPGMGISANN--QMHGQGPSQPCGAVPLGRMPSAGMQN----RPFPGNM 855
Query: 236 GQVNQGNHMMGQRQIPPYRPPQ---QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYP 292
+ + M Q+ P PP Q+ + + QG GMNQ
Sbjct: 856 SSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLM 915
Query: 293 DGNSQYGQQQDAYQG-----PPPQQGYPPQ-----------QQQYPGQQGYPGQQQGYGP 336
+S Y Q + PP P PG+ P + G
Sbjct: 916 ASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKADGK 975
Query: 337 SQGGPGPQ 344
+G P P+
Sbjct: 976 EEGTPQPE 983
Score = 50.1 bits (118), Expect = 3e-06
Identities = 65/249 (26%), Positives = 92/249 (36%), Gaps = 25/249 (10%)
Query: 115 PAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGG----------YN 164
P+P M++ G P + P P+Q ++ + + G Y
Sbjct: 368 PSPMMRSY-GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYA 426
Query: 165 HSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQH 224
+ P+ + ++ MS G P GP S PM+ ++P Q Y M G H
Sbjct: 427 AASPAWAAAQQRSHPAMSPGTP----GPTMGRSQGSPMDPMVMKRP--QLYGM--GSNPH 478
Query: 225 YQGQQP---PMGMMGQVNQGNHMMG-QRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQ 280
Q QQ P G G + +G Q + P Q P QQ SG + + Q
Sbjct: 479 SQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQDSGDATWKETFWLMPPQ 538
Query: 281 GPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGP-SQG 339
+G++ Y G Y QQ PPQ Y P Q Q Q Q+GYG SQ
Sbjct: 539 YGQQGVSG-YCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQP 597
Query: 340 GPGPQYPNY 348
P PN+
Sbjct: 598 PLAPGKPNH 606
Score = 48.9 bits (115), Expect = 8e-06
Identities = 80/355 (22%), Positives = 102/355 (28%), Gaps = 71/355 (20%)
Query: 79 PTQNMPMGPGGMNQSGPPP-----------PPRSHNMPSDGMVGGGPPAPHMQNQMNGQM 127
P Q G G Q G P PP++ +PS P Q M+ +
Sbjct: 536 PPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQP-----QQDMSQEG 590
Query: 128 PGPNHMPMQGPG-PNQLNMTNSSMNMPSSSHGSMGGYNH-------------------SV 167
G P PG PN ++ PSS G + S
Sbjct: 591 YGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSS 650
Query: 168 PSSQSMPVQNQMTMSQGQPMGNY--GPRPNM------SMQPNQGPMMHQQPPSQQYNMPQ 219
QS P Q+ + + + GP P+ S Q GP+ P Q
Sbjct: 651 QGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQP 710
Query: 220 GGGQHYQGQQPPMGMMGQVNQGNHMMGQR---QIPPYRPPQQGP---PQQYSGQEDYYG- 272
G Q P + + M G + Q+ Y P Q GP P G + + G
Sbjct: 711 PGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGI 770
Query: 273 ----DQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYP 328
S G GP QY P GN Y PP G P PG P
Sbjct: 771 SSFQQSNSSGTYGP---QMSQYGPQGN---------YSRPPAYSGVPSASYSGPG----P 814
Query: 329 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 383
G G GP P G+ +P P P Q G
Sbjct: 815 GMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQG 869
Score = 48.5 bits (114), Expect = 1e-05
Identities = 79/292 (27%), Positives = 97/292 (33%), Gaps = 58/292 (19%)
Query: 120 QNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQM 179
+ Q G M GP G +++ ++ + G N S + P NQ+
Sbjct: 314 RQQGGGMMMGPG-------GGGAASLSKAAAGSAAGGFQRFAGQNQH--PSGATPTLNQL 364
Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
S M +YG S P PPSQ + G GQQ GM +
Sbjct: 365 LTSPSPMMRSYGG----SYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKD 420
Query: 240 QGNHMMG---------QRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ-Q 289
G QR P P GP S G P M + Q
Sbjct: 421 MGAQYAAASPAWAAAQQRSHPAMSPGTPGPTM-----------GRSQGSPMDPMVMKRPQ 469
Query: 290 YYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP-GQQG-YPGQQQGYG-PSQGGPG---- 342
Y G++ + Q Q + P G PP Q+YP G QG PG G P Q G
Sbjct: 470 LYGMGSNPHSQPQQSSPYPGGSYG-PPGPQRYPIGIQGRTPGAMAGMQYPQQQDSGDATW 528
Query: 343 --------PQY-----PNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 381
PQY Y Q QGQQ Y QP PP P Q Y Q Q
Sbjct: 529 KETFWLMPPQYGQQGVSGYCQ-QGQQ--PYYSQQPQPPHLPPQAQYLPSQSQ 577
Score = 47.0 bits (110), Expect = 3e-05
Identities = 86/348 (24%), Positives = 114/348 (32%), Gaps = 72/348 (20%)
Query: 94 GPPPPP--RSHNMPSDGMVGGGPPA------PHMQNQMNGQMPGPNHMPMQGPGPNQLNM 145
G P P RS P D MV P PH Q Q + PG ++ P PGP +
Sbjct: 446 GTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGP---PGPQRY-- 500
Query: 146 TNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQ----MTMSQGQP-MGNY---GPRPNMS 197
+ + + G+M G + + M GQ + Y G +P S
Sbjct: 501 ---PIGIQGRTPGAMAGMQYPQQQDSGDATWKETFWLMPPQYGQQGVSGYCQQGQQPYYS 557
Query: 198 MQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ------------PPMGMMGQVNQGNHMM 245
QP Q P + PP QY +P Q YQ QQ PP+ G+ N + +
Sbjct: 558 QQP-QPPHL---PPQAQY-LPSQSQQRYQPQQDMSQEGYGTRSQPPLAP-GKPNHEDLNL 611
Query: 246 GQRQIPPYRPPQQGPPQQY--------------SGQEDYYGDQYSHGGQGPPEGMNQQYY 291
Q++ P P G SG GDQ S+ Q P +
Sbjct: 612 IQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQ-SNPAQSP---FSPHAS 667
Query: 292 PDGNSQYGQQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPN 347
P +S G + G P + P PG Q P S P
Sbjct: 668 PHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSP 727
Query: 348 YPQGQG--------QQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
PQ +G Q Y P Q GP P P G ++QQ
Sbjct: 728 MPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQ 775
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 242 NHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQ 301
NH + P PP Q + ++ + H + +NQ Q QQ
Sbjct: 8 NHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQ 67
Query: 302 QDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRP 361
Q QQQQ+P G G Q GP + P + + GG
Sbjct: 68 QQ-------------QQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGG--- 111
Query: 362 TQPGPPQPP 370
Q PP PP
Sbjct: 112 -QADPPGPP 119
Score = 33.9 bits (76), Expect = 0.26
Identities = 41/175 (23%), Positives = 59/175 (33%), Gaps = 27/175 (15%)
Query: 210 PPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQED 269
PP QQ++ H+ + +H Q+Q+ ++ QQ QQ Q+
Sbjct: 21 PPHQQHHHHHHAHHHHHHAH---------HLHHHHALQQQLNQFQQQQQQQQQQQQQQQQ 71
Query: 270 YYGDQYSHGGQGPPEGMNQQYYPDGNS-QYGQQQDAYQGP------PPQQGYPPQQQQYP 322
++ G G Q PD Q+G +D+ G PP P + P
Sbjct: 72 QQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 323 GQQGYPGQQQGYGPSQGGPGPQYP--NYPQGQG---------QQYGGYRPTQPGP 366
+ G P + P G G Q P P G G YG P GP
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGP 186
Score = 33.9 bits (76), Expect = 0.26
Identities = 55/226 (24%), Positives = 71/226 (31%), Gaps = 32/226 (14%)
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
N Q Q P S++ S+GG P Q Q ++ G
Sbjct: 53 NQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQ 112
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQG------QQPPMGMMGQVNQGNHM 244
P + G P + P GG + G QQPP+ + G
Sbjct: 113 ADPPGPPLLSKPGDEDDAPPKMGE---PAGGRYEHPGLGALGTQQPPVAVPGGGG----- 164
Query: 245 MGQRQIPPYR------PPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQY 298
G +P + P G P G+ DQ HGGQ P GM + +
Sbjct: 165 -GPAAVPEFNNYYGSAAPASGGP---GGRAGPCFDQ--HGGQQSP-GMGMMHSASAAAAG 217
Query: 299 GQ-QQDAYQGPPPQQGYPPQQ-QQYPGQQGYPGQQQGYGPSQGGPG 342
D Q +GYP Q YPG PG G G GG G
Sbjct: 218 APGSMDPLQNS--HEGYPNSQCNHYPG-YSRPGAGGGGGGGGGGGG 260
Score = 28.9 bits (63), Expect = 8.2
Identities = 49/206 (23%), Positives = 67/206 (32%), Gaps = 39/206 (18%)
Query: 71 MQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGP 130
+Q P P ++ GPG + G PP + S G P +M N MP P
Sbjct: 1361 IQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEG---PQQNMWAARN-DMPYP 1416
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
+ QGPG MN + M V +Q + Q +
Sbjct: 1417 -YQNRQGPGGPTQAPPYPGMN-----------------RTDDMMVPDQRINHESQWPSHV 1458
Query: 191 GPR-PNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM----- 244
R P MS + P+ +PP Y P H P Q + N M
Sbjct: 1459 SQRQPYMSSSASMQPI--TRPPQPSYQTPPSLPNHISRAPSPASF--QRSLENRMSPSKS 1514
Query: 245 -----MGQRQIPPYRPPQQ--GPPQQ 263
M +++ P P Q GPP Q
Sbjct: 1515 PFLPSMKMQKVMPTVPTSQVTGPPPQ 1540
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 64.3 bits (155), Expect = 2e-10
Identities = 88/334 (26%), Positives = 109/334 (32%), Gaps = 62/334 (18%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
P P P P+S S V G P + +GQM PMQG + +
Sbjct: 1162 PPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMT-----PMQGGRSSTI 1216
Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQM-----------------TMSQGQP 186
++ + ++ SS + P Q M + + M +P
Sbjct: 1217 SVHDPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEP 1276
Query: 187 MGNYGPRPNMSMQP--NQGPM--MHQQPPSQQYNMPQGG---------GQHYQGQQPPMG 233
G PN SMQ NQ P M Q+ P G GQ Y GQ PP G
Sbjct: 1277 FMTQGQMPNSSMQDMYNQSPSGAMSNLGMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSG 1336
Query: 234 MMG-----------QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
Q N HM G P R QYS Q+ +QY GP
Sbjct: 1337 QPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYSSQQQEMYNQYGGSYSGP 1396
Query: 283 PEGMNQQYYPDGNSQYGQQQDAYQGPPPQQ--GYPPQQQQYPGQ-QGYPGQQQGYGPSQG 339
Q YP Y ++ QGP Q G PPQ P Q G QQ ++
Sbjct: 1397 DRRPIQGQYP-----YPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEGPQQNMWAARN 1451
Query: 340 GPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQR 373
YP Q GG PTQ PP P R
Sbjct: 1452 D-----MPYPYQNRQGPGG--PTQ-APPYPGMNR 1477
Score = 60.8 bits (146), Expect = 2e-09
Identities = 77/269 (28%), Positives = 99/269 (36%), Gaps = 53/269 (19%)
Query: 126 QMPGP-NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQN--QMTMS 182
Q P P N +QGP Q +NS +P S P Q P+Q T+S
Sbjct: 1161 QPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPA---STPHGQMTPMQGGRSSTIS 1217
Query: 183 QGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQH-YQGQQPPMGMMGQV-NQ 240
P + S P + M P Q +MP G+ Y+ + P G M +V
Sbjct: 1218 VHDPFSDVSD----SSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGS 1273
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ 300
M Q Q+P S +D Y Q P M+ N GQ
Sbjct: 1274 SEPFMTQGQMPN------------SSMQDMYN-------QSPSGAMS-------NLGMGQ 1307
Query: 301 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR 360
+Q G + + P QQYPGQ G P Q YG Q G PQ PNY + YG
Sbjct: 1308 RQQFPYGASYDRRHEPYGQQYPGQ-GPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYG--- 1363
Query: 361 PTQPGPPQPPQQRPYG--YDQGQYGNYQQ 387
PP +R G Y+ QY + QQ
Sbjct: 1364 --------PPAKRHEGDMYNM-QYSSQQQ 1383
Score = 58.2 bits (139), Expect = 1e-08
Identities = 86/339 (25%), Positives = 118/339 (34%), Gaps = 45/339 (13%)
Query: 67 SNQNMQS-LLPA--PPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGGPPAPHMQNQ 122
SNQ+ + PA P +Q P PG ++S P MP + G + G P M Q
Sbjct: 675 SNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMA-Q 733
Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS 182
Q GP+ P PG Q++ SS +SS G Y + ++
Sbjct: 734 YGPQQTGPSMSPHPSPG-GQMHAGISSFQQSNSS----GTYGPQMSQYGPQGNYSRPPAY 788
Query: 183 QGQPMGNY-GPRPNMSMQPNQGPMMHQQPPSQQY------NMPQGGGQHYQGQQPPMGMM 235
G P +Y GP P M + N MH Q PSQ MP G Q+ +P G M
Sbjct: 789 SGVPSASYSGPGPGMGISANN--QMHGQGPSQPCGAVPLGRMPSAGMQN----RPFPGNM 842
Query: 236 GQVNQGNHMMGQRQIPPYRPPQ---QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYP 292
+ + M Q+ P PP Q+ + + QG GMNQ
Sbjct: 843 SSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLM 902
Query: 293 DGNSQYGQQQDAYQG-----PPPQQGYPPQ-----------QQQYPGQQGYPGQQQGYGP 336
+S Y Q + PP P PG+ P + G
Sbjct: 903 ASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKADGK 962
Query: 337 SQGGPGPQYPNYPQGQGQQYGGYRPTQPGP-PQPPQQRP 374
+G P P+ + Q G +P PG P P P
Sbjct: 963 EEGTPQPESKSKDSYSSQ--GISQPPTPGNLPVPSPMSP 999
Score = 53.9 bits (128), Expect = 2e-07
Identities = 77/279 (27%), Positives = 95/279 (34%), Gaps = 45/279 (16%)
Query: 120 QNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQM 179
+ Q G M GP G +++ ++ + G N S + P NQ+
Sbjct: 314 RQQGGGMMMGPG-------GGGAASLSKAAAGSAAGGFQRFAGQNQH--PSGATPTLNQL 364
Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
S M +YG S P PPSQ + G GQQ GM +
Sbjct: 365 LTSPSPMMRSYGG----SYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKD 420
Query: 240 QGNHMMG---------QRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ-Q 289
G QR P P GP S G P M + Q
Sbjct: 421 MGAQYAAASPAWAAAQQRSHPAMSPGTPGPTM-----------GRSQGSPMDPMVMKRPQ 469
Query: 290 YYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP-GQQG-YPGQQQGYGPSQGGPGPQY-- 345
Y G++ + Q Q + P G PP Q+YP G QG PG G Q PQY
Sbjct: 470 LYGMGSNPHSQPQQSSPYPGGSYG-PPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQ 528
Query: 346 ---PNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 381
Y Q QGQQ Y QP PP P Q Y Q Q
Sbjct: 529 QGVSGYCQ-QGQQ--PYYSQQPQPPHLPPQAQYLPSQSQ 564
Score = 53.5 bits (127), Expect = 3e-07
Identities = 87/340 (25%), Positives = 114/340 (33%), Gaps = 69/340 (20%)
Query: 94 GPPPPP--RSHNMPSDGMVGGGPPA------PHMQNQMNGQMPGPNHMPMQGPGPNQLNM 145
G P P RS P D MV P PH Q Q + PG ++ P PGP +
Sbjct: 446 GTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGP---PGPQRY-- 500
Query: 146 TNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPM 205
+ + + G+M G + P Q P Q +S G +P S QP Q P
Sbjct: 501 ---PIGIQGRTPGAMAGMQY--PQQQMPPQYGQQGVSG---YCQQGQQPYYSQQP-QPPH 551
Query: 206 MHQQPPSQQYNMPQGGGQHYQGQQ------------PPMGMMGQVNQGNHMMGQRQIPPY 253
+ PP QY +P Q YQ QQ PP+ G+ N + + Q++ P
Sbjct: 552 L---PPQAQY-LPSQSQQRYQPQQDMSQEGYGTRSQPPLAP-GKPNHEDLNLIQQERPSS 606
Query: 254 RPPQQGPPQQY--------------SGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYG 299
P G SG GDQ S+ Q P + P +S G
Sbjct: 607 LPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQ-SNPAQSP---FSPHASPHLSSIPG 662
Query: 300 QQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQG-- 353
+ G P + P PG Q P S P PQ +G
Sbjct: 663 GPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFM 722
Query: 354 ------QQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
Q Y P Q GP P P G ++QQ
Sbjct: 723 AGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQ 762
Score = 49.7 bits (117), Expect = 5e-06
Identities = 82/360 (22%), Positives = 104/360 (28%), Gaps = 76/360 (21%)
Query: 79 PTQNMP-----MGPGGMNQSGPPP-----------PPRSHNMPSDGMVGGGPPAPHMQNQ 122
P Q MP G G Q G P PP++ +PS P Q
Sbjct: 518 PQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQP-----QQD 572
Query: 123 MNGQMPGPNHMPMQGPG-PNQLNMTNSSMNMPSSSHGSMGGYNH---------------- 165
M+ + G P PG PN ++ PSS G +
Sbjct: 573 MSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSAS 632
Query: 166 ---SVPSSQSMPVQNQMTMSQGQPMGNY--GPRPNM------SMQPNQGPMMHQQPPSQQ 214
S QS P Q+ + + + GP P+ S Q GP+ P Q
Sbjct: 633 GSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQ 692
Query: 215 YNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR---QIPPYRPPQQGP---PQQYSGQE 268
G Q P + + M G + Q+ Y P Q GP P G +
Sbjct: 693 MPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQ 752
Query: 269 DYYG-----DQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPG 323
+ G S G GP QY P GN Y PP G P PG
Sbjct: 753 MHAGISSFQQSNSSGTYGP---QMSQYGPQGN---------YSRPPAYSGVPSASYSGPG 800
Query: 324 QQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 383
PG G GP P G+ +P P P Q G
Sbjct: 801 ----PGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQG 856
Score = 48.9 bits (115), Expect = 8e-06
Identities = 75/282 (26%), Positives = 95/282 (33%), Gaps = 53/282 (18%)
Query: 71 MQSLLPAPPTQNMPMG---PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQM 127
+ LL +P G P + S PPPPP + P G A Q M
Sbjct: 361 LNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP---SQPQSQAAAAGAAAGGQQAAAG--M 415
Query: 128 PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
M Q + + P+ S G+ G ++ SQ P+ + M M + Q
Sbjct: 416 GLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGP---TMGRSQGSPM-DPMVMKRPQLY 471
Query: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
G M P+ P P Y P G Q Y P+G+ G+ M G
Sbjct: 472 G-------MGSNPHSQPQQSSPYPGGSYGPP--GPQRY-----PIGIQGRTPGA--MAGM 515
Query: 248 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQG 307
+ P QQ PPQ YG Q G Y G Y QQ
Sbjct: 516 QY-----PQQQMPPQ--------YGQQGVSG-----------YCQQGQQPYYSQQPQPPH 551
Query: 308 PPPQQGYPPQQQQYPGQQGYPGQQQGYGP-SQGGPGPQYPNY 348
PPQ Y P Q Q Q Q+GYG SQ P PN+
Sbjct: 552 LPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNH 593
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 242 NHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQ 301
NH + P PP Q + ++ + H + +NQ Q QQ
Sbjct: 8 NHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQ 67
Query: 302 QDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRP 361
Q QQQQ+P G G Q GP + P + + GG
Sbjct: 68 QQ-------------QQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGG--- 111
Query: 362 TQPGPPQPP 370
Q PP PP
Sbjct: 112 -QADPPGPP 119
Score = 33.9 bits (76), Expect = 0.26
Identities = 41/175 (23%), Positives = 59/175 (33%), Gaps = 27/175 (15%)
Query: 210 PPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQED 269
PP QQ++ H+ + +H Q+Q+ ++ QQ QQ Q+
Sbjct: 21 PPHQQHHHHHHAHHHHHHAH---------HLHHHHALQQQLNQFQQQQQQQQQQQQQQQQ 71
Query: 270 YYGDQYSHGGQGPPEGMNQQYYPDGNS-QYGQQQDAYQGP------PPQQGYPPQQQQYP 322
++ G G Q PD Q+G +D+ G PP P + P
Sbjct: 72 QQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 323 GQQGYPGQQQGYGPSQGGPGPQYP--NYPQGQG---------QQYGGYRPTQPGP 366
+ G P + P G G Q P P G G YG P GP
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGP 186
Score = 33.9 bits (76), Expect = 0.26
Identities = 55/226 (24%), Positives = 71/226 (31%), Gaps = 32/226 (14%)
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
N Q Q P S++ S+GG P Q Q ++ G
Sbjct: 53 NQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQ 112
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQG------QQPPMGMMGQVNQGNHM 244
P + G P + P GG + G QQPP+ + G
Sbjct: 113 ADPPGPPLLSKPGDEDDAPPKMGE---PAGGRYEHPGLGALGTQQPPVAVPGGGG----- 164
Query: 245 MGQRQIPPYR------PPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQY 298
G +P + P G P G+ DQ HGGQ P GM + +
Sbjct: 165 -GPAAVPEFNNYYGSAAPASGGP---GGRAGPCFDQ--HGGQQSP-GMGMMHSASAAAAG 217
Query: 299 GQ-QQDAYQGPPPQQGYPPQQ-QQYPGQQGYPGQQQGYGPSQGGPG 342
D Q +GYP Q YPG PG G G GG G
Sbjct: 218 APGSMDPLQNS--HEGYPNSQCNHYPG-YSRPGAGGGGGGGGGGGG 260
Score = 28.9 bits (63), Expect = 8.2
Identities = 49/206 (23%), Positives = 67/206 (32%), Gaps = 39/206 (18%)
Query: 71 MQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGP 130
+Q P P ++ GPG + G PP + S G P +M N MP P
Sbjct: 1401 IQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEG---PQQNMWAARN-DMPYP 1456
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
+ QGPG MN + M V +Q + Q +
Sbjct: 1457 -YQNRQGPGGPTQAPPYPGMN-----------------RTDDMMVPDQRINHESQWPSHV 1498
Query: 191 GPR-PNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM----- 244
R P MS + P+ +PP Y P H P Q + N M
Sbjct: 1499 SQRQPYMSSSASMQPI--TRPPQPSYQTPPSLPNHISRAPSPASF--QRSLENRMSPSKS 1554
Query: 245 -----MGQRQIPPYRPPQQ--GPPQQ 263
M +++ P P Q GPP Q
Sbjct: 1555 PFLPSMKMQKVMPTVPTSQVTGPPPQ 1580
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 64.3 bits (155), Expect = 2e-10
Identities = 88/334 (26%), Positives = 109/334 (32%), Gaps = 62/334 (18%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
P P P P+S S V G P + +GQM PMQG + +
Sbjct: 1109 PPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMT-----PMQGGRSSTI 1163
Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQM-----------------TMSQGQP 186
++ + ++ SS + P Q M + + M +P
Sbjct: 1164 SVHDPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEP 1223
Query: 187 MGNYGPRPNMSMQP--NQGPM--MHQQPPSQQYNMPQGG---------GQHYQGQQPPMG 233
G PN SMQ NQ P M Q+ P G GQ Y GQ PP G
Sbjct: 1224 FMTQGQMPNSSMQDMYNQSPSGAMSNLGMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSG 1283
Query: 234 MMG-----------QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
Q N HM G P R QYS Q+ +QY GP
Sbjct: 1284 QPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYSSQQQEMYNQYGGSYSGP 1343
Query: 283 PEGMNQQYYPDGNSQYGQQQDAYQGPPPQQ--GYPPQQQQYPGQ-QGYPGQQQGYGPSQG 339
Q YP Y ++ QGP Q G PPQ P Q G QQ ++
Sbjct: 1344 DRRPIQGQYP-----YPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEGPQQNMWAARN 1398
Query: 340 GPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQR 373
YP Q GG PTQ PP P R
Sbjct: 1399 D-----MPYPYQNRQGPGG--PTQ-APPYPGMNR 1424
Score = 60.8 bits (146), Expect = 2e-09
Identities = 77/269 (28%), Positives = 99/269 (36%), Gaps = 53/269 (19%)
Query: 126 QMPGP-NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQN--QMTMS 182
Q P P N +QGP Q +NS +P S P Q P+Q T+S
Sbjct: 1108 QPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPA---STPHGQMTPMQGGRSSTIS 1164
Query: 183 QGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQH-YQGQQPPMGMMGQV-NQ 240
P + S P + M P Q +MP G+ Y+ + P G M +V
Sbjct: 1165 VHDPFSDVSD----SSFPKRNSMTPNAPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGS 1220
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQ 300
M Q Q+P S +D Y Q P M+ N GQ
Sbjct: 1221 SEPFMTQGQMPN------------SSMQDMYN-------QSPSGAMS-------NLGMGQ 1254
Query: 301 QQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYR 360
+Q G + + P QQYPGQ G P Q YG Q G PQ PNY + YG
Sbjct: 1255 RQQFPYGASYDRRHEPYGQQYPGQ-GPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYG--- 1310
Query: 361 PTQPGPPQPPQQRPYG--YDQGQYGNYQQ 387
PP +R G Y+ QY + QQ
Sbjct: 1311 --------PPAKRHEGDMYNM-QYSSQQQ 1330
Score = 56.2 bits (134), Expect = 5e-08
Identities = 78/308 (25%), Positives = 108/308 (35%), Gaps = 42/308 (13%)
Query: 67 SNQNMQS-LLPA--PPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGGPPAPHMQNQ 122
SNQ+ + PA P +Q P PG ++S P MP + G + G P M Q
Sbjct: 675 SNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMA-Q 733
Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS 182
Q GP+ P PG Q++ SS +SS G Y + ++
Sbjct: 734 YGPQQTGPSMSPHPSPG-GQMHAGISSFQQSNSS----GTYGPQMSQYGPQGNYSRPPAY 788
Query: 183 QGQPMGNY-GPRPNMSMQPNQGPMMHQQPPSQQY------NMPQGGGQHYQGQQPPMGMM 235
G P +Y GP P M + N MH Q PSQ MP G Q+ +P G M
Sbjct: 789 SGVPSASYSGPGPGMGISANN--QMHGQGPSQPCGAVPLGRMPSAGMQN----RPFPGNM 842
Query: 236 GQVNQGNHMMGQRQIPPYRPPQ---QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYP 292
+ + M Q+ P PP Q+ + + QG GMNQ
Sbjct: 843 SSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLM 902
Query: 293 DGNSQYGQQQDAYQG-----PPPQQGYPPQ-----------QQQYPGQQGYPGQQQGYGP 336
+S Y Q + PP P PG+ P + G
Sbjct: 903 ASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKADGK 962
Query: 337 SQGGPGPQ 344
+G P P+
Sbjct: 963 EEGTPQPE 970
Score = 53.9 bits (128), Expect = 2e-07
Identities = 77/279 (27%), Positives = 95/279 (34%), Gaps = 45/279 (16%)
Query: 120 QNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQM 179
+ Q G M GP G +++ ++ + G N S + P NQ+
Sbjct: 314 RQQGGGMMMGPG-------GGGAASLSKAAAGSAAGGFQRFAGQNQH--PSGATPTLNQL 364
Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
S M +YG S P PPSQ + G GQQ GM +
Sbjct: 365 LTSPSPMMRSYGG----SYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKD 420
Query: 240 QGNHMMG---------QRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ-Q 289
G QR P P GP S G P M + Q
Sbjct: 421 MGAQYAAASPAWAAAQQRSHPAMSPGTPGPTM-----------GRSQGSPMDPMVMKRPQ 469
Query: 290 YYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP-GQQG-YPGQQQGYGPSQGGPGPQY-- 345
Y G++ + Q Q + P G PP Q+YP G QG PG G Q PQY
Sbjct: 470 LYGMGSNPHSQPQQSSPYPGGSYG-PPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQ 528
Query: 346 ---PNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 381
Y Q QGQQ Y QP PP P Q Y Q Q
Sbjct: 529 QGVSGYCQ-QGQQ--PYYSQQPQPPHLPPQAQYLPSQSQ 564
Score = 53.5 bits (127), Expect = 3e-07
Identities = 87/340 (25%), Positives = 114/340 (33%), Gaps = 69/340 (20%)
Query: 94 GPPPPP--RSHNMPSDGMVGGGPPA------PHMQNQMNGQMPGPNHMPMQGPGPNQLNM 145
G P P RS P D MV P PH Q Q + PG ++ P PGP +
Sbjct: 446 GTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGP---PGPQRY-- 500
Query: 146 TNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPM 205
+ + + G+M G + P Q P Q +S G +P S QP Q P
Sbjct: 501 ---PIGIQGRTPGAMAGMQY--PQQQMPPQYGQQGVSG---YCQQGQQPYYSQQP-QPPH 551
Query: 206 MHQQPPSQQYNMPQGGGQHYQGQQ------------PPMGMMGQVNQGNHMMGQRQIPPY 253
+ PP QY +P Q YQ QQ PP+ G+ N + + Q++ P
Sbjct: 552 L---PPQAQY-LPSQSQQRYQPQQDMSQEGYGTRSQPPLAP-GKPNHEDLNLIQQERPSS 606
Query: 254 RPPQQGPPQQY--------------SGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYG 299
P G SG GDQ S+ Q P + P +S G
Sbjct: 607 LPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQ-SNPAQSP---FSPHASPHLSSIPG 662
Query: 300 QQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQG-- 353
+ G P + P PG Q P S P PQ +G
Sbjct: 663 GPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFM 722
Query: 354 ------QQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
Q Y P Q GP P P G ++QQ
Sbjct: 723 AGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQ 762
Score = 49.7 bits (117), Expect = 5e-06
Identities = 82/360 (22%), Positives = 104/360 (28%), Gaps = 76/360 (21%)
Query: 79 PTQNMP-----MGPGGMNQSGPPP-----------PPRSHNMPSDGMVGGGPPAPHMQNQ 122
P Q MP G G Q G P PP++ +PS P Q
Sbjct: 518 PQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQSQQRYQP-----QQD 572
Query: 123 MNGQMPGPNHMPMQGPG-PNQLNMTNSSMNMPSSSHGSMGGYNH---------------- 165
M+ + G P PG PN ++ PSS G +
Sbjct: 573 MSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSAS 632
Query: 166 ---SVPSSQSMPVQNQMTMSQGQPMGNY--GPRPNM------SMQPNQGPMMHQQPPSQQ 214
S QS P Q+ + + + GP P+ S Q GP+ P Q
Sbjct: 633 GSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQ 692
Query: 215 YNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR---QIPPYRPPQQGP---PQQYSGQE 268
G Q P + + M G + Q+ Y P Q GP P G +
Sbjct: 693 MPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQ 752
Query: 269 DYYG-----DQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPG 323
+ G S G GP QY P GN Y PP G P PG
Sbjct: 753 MHAGISSFQQSNSSGTYGP---QMSQYGPQGN---------YSRPPAYSGVPSASYSGPG 800
Query: 324 QQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 383
PG G GP P G+ +P P P Q G
Sbjct: 801 ----PGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQG 856
Score = 48.9 bits (115), Expect = 8e-06
Identities = 75/282 (26%), Positives = 95/282 (33%), Gaps = 53/282 (18%)
Query: 71 MQSLLPAPPTQNMPMG---PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQM 127
+ LL +P G P + S PPPPP + P G A Q M
Sbjct: 361 LNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP---SQPQSQAAAAGAAAGGQQAAAG--M 415
Query: 128 PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
M Q + + P+ S G+ G ++ SQ P+ + M M + Q
Sbjct: 416 GLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGP---TMGRSQGSPM-DPMVMKRPQLY 471
Query: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
G M P+ P P Y P G Q Y P+G+ G+ M G
Sbjct: 472 G-------MGSNPHSQPQQSSPYPGGSYGPP--GPQRY-----PIGIQGRTPGA--MAGM 515
Query: 248 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQG 307
+ P QQ PPQ YG Q G Y G Y QQ
Sbjct: 516 QY-----PQQQMPPQ--------YGQQGVSG-----------YCQQGQQPYYSQQPQPPH 551
Query: 308 PPPQQGYPPQQQQYPGQQGYPGQQQGYGP-SQGGPGPQYPNY 348
PPQ Y P Q Q Q Q+GYG SQ P PN+
Sbjct: 552 LPPQAQYLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKPNH 593
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 242 NHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQ 301
NH + P PP Q + ++ + H + +NQ Q QQ
Sbjct: 8 NHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQ 67
Query: 302 QDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRP 361
Q QQQQ+P G G Q GP + P + + GG
Sbjct: 68 QQ-------------QQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGG--- 111
Query: 362 TQPGPPQPP 370
Q PP PP
Sbjct: 112 -QADPPGPP 119
Score = 33.9 bits (76), Expect = 0.26
Identities = 41/175 (23%), Positives = 59/175 (33%), Gaps = 27/175 (15%)
Query: 210 PPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQED 269
PP QQ++ H+ + +H Q+Q+ ++ QQ QQ Q+
Sbjct: 21 PPHQQHHHHHHAHHHHHHAH---------HLHHHHALQQQLNQFQQQQQQQQQQQQQQQQ 71
Query: 270 YYGDQYSHGGQGPPEGMNQQYYPDGNS-QYGQQQDAYQGP------PPQQGYPPQQQQYP 322
++ G G Q PD Q+G +D+ G PP P + P
Sbjct: 72 QQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 323 GQQGYPGQQQGYGPSQGGPGPQYP--NYPQGQG---------QQYGGYRPTQPGP 366
+ G P + P G G Q P P G G YG P GP
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGP 186
Score = 33.9 bits (76), Expect = 0.26
Identities = 55/226 (24%), Positives = 71/226 (31%), Gaps = 32/226 (14%)
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
N Q Q P S++ S+GG P Q Q ++ G
Sbjct: 53 NQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQ 112
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQG------QQPPMGMMGQVNQGNHM 244
P + G P + P GG + G QQPP+ + G
Sbjct: 113 ADPPGPPLLSKPGDEDDAPPKMGE---PAGGRYEHPGLGALGTQQPPVAVPGGGG----- 164
Query: 245 MGQRQIPPYR------PPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQY 298
G +P + P G P G+ DQ HGGQ P GM + +
Sbjct: 165 -GPAAVPEFNNYYGSAAPASGGP---GGRAGPCFDQ--HGGQQSP-GMGMMHSASAAAAG 217
Query: 299 GQ-QQDAYQGPPPQQGYPPQQ-QQYPGQQGYPGQQQGYGPSQGGPG 342
D Q +GYP Q YPG PG G G GG G
Sbjct: 218 APGSMDPLQNS--HEGYPNSQCNHYPG-YSRPGAGGGGGGGGGGGG 260
Score = 28.9 bits (63), Expect = 8.2
Identities = 49/206 (23%), Positives = 67/206 (32%), Gaps = 39/206 (18%)
Query: 71 MQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGP 130
+Q P P ++ GPG + G PP + S G P +M N MP P
Sbjct: 1348 IQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEG---PQQNMWAARN-DMPYP 1403
Query: 131 NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
+ QGPG MN + M V +Q + Q +
Sbjct: 1404 -YQNRQGPGGPTQAPPYPGMN-----------------RTDDMMVPDQRINHESQWPSHV 1445
Query: 191 GPR-PNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM----- 244
R P MS + P+ +PP Y P H P Q + N M
Sbjct: 1446 SQRQPYMSSSASMQPI--TRPPQPSYQTPPSLPNHISRAPSPASF--QRSLENRMSPSKS 1501
Query: 245 -----MGQRQIPPYRPPQQ--GPPQQ 263
M +++ P P Q GPP Q
Sbjct: 1502 PFLPSMKMQKVMPTVPTSQVTGPPPQ 1527
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 63.9 bits (154), Expect = 2e-10
Identities = 80/305 (26%), Positives = 109/305 (35%), Gaps = 32/305 (10%)
Query: 85 MGPGGMNQSGPPPPPRSHNMPSDGMVGGGP---PAPHMQNQMNGQM--PG-PNHMPMQGP 138
MG G PP PR + P GGP P P G++ PG P + QGP
Sbjct: 822 MGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGP 881
Query: 139 GPNQLNMTNSSMNMPS--SSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP-----MGNYG 191
S+ P ++G GG P Q T +G+ G G
Sbjct: 882 --------KGSIGFPGFPGANGEKGG--RGTPGKPGPRGQRGPTGPRGERGPRGITGKPG 931
Query: 192 PRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIP 251
P+ N GP + P Q G + G G+ G Q Q +
Sbjct: 932 PKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG 991
Query: 252 PYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQ 311
P PP PQ +G+ G++ G GPP +Q P + G + D P
Sbjct: 992 PPGPPGVVGPQGPTGETGPMGERGHPGPPGPP---GEQGLPGLAGKEGTKGDPGPAGLPG 1048
Query: 312 QGYPPQQQQYPGQQGYPGQQQGYG--PSQGGPGPQYPNYPQGQGQQYGGYRPT----QPG 365
+ PP + +PG +G PG G ++G PGP P G+ G P +PG
Sbjct: 1049 KDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG 1108
Query: 366 PPQPP 370
P PP
Sbjct: 1109 PQGPP 1113
Score = 57.4 bits (137), Expect = 2e-08
Identities = 81/343 (23%), Positives = 107/343 (31%), Gaps = 54/343 (15%)
Query: 76 PAPPTQNMPMGPGG-------MNQSGPPPPPRSHNMPSDGMVGG----GPPAPHMQNQMN 124
P PP P GP G GPP PP +P G+ G G P P +
Sbjct: 993 PGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP--GLAGKEGTKGDPGPAGLPGKD 1050
Query: 125 GQ-----------MPGP--------NHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNH 165
G +PGP N P PGP + P+ + G +G
Sbjct: 1051 GPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGP----AGSPGERGPAGAAGPIGIPGR 1106
Query: 166 SVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHY 225
P P + + P G G GP PP + + + G
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQ 1166
Query: 226 QGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
+G + G G Q P + P+ G GD+ G GPP
Sbjct: 1167 KGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGP 1226
Query: 286 MNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYG---------- 335
+ Q P + G+ D Q PP P PG G G G G
Sbjct: 1227 VGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGE 1286
Query: 336 PSQGG----PGPQYPNYPQGQGQQYGGYRPT----QPGPPQPP 370
P + G PG P P+G+ + G P+ PGP PP
Sbjct: 1287 PGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329
Score = 56.6 bits (135), Expect = 4e-08
Identities = 80/311 (25%), Positives = 104/311 (33%), Gaps = 46/311 (14%)
Query: 87 PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP-GPNQLNM 145
PG + + G P +P +G GPP P + G+ GP GP +
Sbjct: 1278 PGAVGEKGEPGEAGEPGLPGEG----GPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDG 1333
Query: 146 TNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPM 205
S P G G P+ Q P ++ G+P P P P+ GP
Sbjct: 1334 PKGSPG-PVGFPGDPGPPGEPGPAGQDGPPGDKG--DDGEPGQTGSPGPTGEPGPS-GPP 1389
Query: 206 MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYS 265
+ PP P G +G+Q G G+ I P P + P
Sbjct: 1390 GKRGPPG-----PAGP----EGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLR 1440
Query: 266 GQEDYYGDQY---SHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGY--PPQQQQ 320
G G+Q S G GPP M P G + + +G P G PP +Q
Sbjct: 1441 GIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGE--KGHPGLIGLIGPPGEQG 1498
Query: 321 YPGQQGYPGQQQGYGPS--QGGPGPQYPNYPQGQ-------------------GQQYGGY 359
G +G PG Q GP QG GP P P G G +
Sbjct: 1499 EKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG 1558
Query: 360 RPTQPGPPQPP 370
P PGPP PP
Sbjct: 1559 HPGPPGPPGPP 1569
Score = 55.8 bits (133), Expect = 6e-08
Identities = 91/338 (26%), Positives = 122/338 (36%), Gaps = 62/338 (18%)
Query: 81 QNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGP--NHMPMQGP 138
+ +P PG GP PP GPP P M+GQ PGP N P P
Sbjct: 672 RGLPGEPGPRGLLGPKGPP-------------GPPGPPGVTGMDGQ-PGPKGNVGPQGEP 717
Query: 139 GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSM 198
GP + +P G++G P + P M + G P G+ G
Sbjct: 718 GPPGQQGNPGAQGLPGPQ-GAIGPPGEKGPLGK--PGLPGMPGADGPP-GHPGKEGPPGE 773
Query: 199 QPNQGPMMHQQPPSQQYNMPQG-----------------GGQHYQGQQPPMGMMGQVNQ- 240
+ QGP Q P Y P+G G + G + MG+ G +
Sbjct: 774 KGGQGPPGPQGPIG--YPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEI 831
Query: 241 ---------GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYY 291
G R P P GPP + G+ G G QGP + +
Sbjct: 832 GPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGE-KGKLGVPGLPGYPGRQGPKGSIGFPGF 890
Query: 292 PDGNSQYGQQ-QDAYQGPPPQQGYP-PQQQQYP----GQQGYPGQQQGYGPSQGGPGPQY 345
P N + G + GP Q+G P+ ++ P G+ G G G GP+ G PG +
Sbjct: 891 PGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPA-GPPGERG 949
Query: 346 PNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 383
PN PQG G+ P GPP PP + GQ G
Sbjct: 950 PNGPQGPT----GF-PGPKGPPGPPGKDGLPGHPGQRG 982
Score = 55.1 bits (131), Expect = 1e-07
Identities = 89/338 (26%), Positives = 117/338 (34%), Gaps = 63/338 (18%)
Query: 75 LPAPPTQNMPMGP-GGMNQSGPPPPPRSHNMP-SDGMVGGGPPAPHMQNQMNGQMPGPNH 132
LP PP P G G + GPP P +P +DG+ G + + G +
Sbjct: 479 LPGPPGTMGPTGQVGDPGERGPPGRP---GLPGADGLPGPPGTMLMLPFRFGGGGDAGSK 535
Query: 133 MPMQGPGPNQ----LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMG 188
PM +Q L ++ P+ G G P P + +G+P G
Sbjct: 536 GPMVSAQESQAQAILQQARLALRGPAGPMGLTGR-----PGPVGPPGSGGL---KGEP-G 586
Query: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMG------MMGQVNQGN 242
+ GP+ +Q GP P ++ G + GQ P G + G +
Sbjct: 587 DVGPQGPRGVQGPPGPA---GKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKG 643
Query: 243 HMMGQRQIPPYRPP-------------QQGPPQQYSGQEDYYGDQYSHGGQGPP--EGMN 287
H P PP +G P + G G + G GPP GM+
Sbjct: 644 HRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGE-PGPRGLLGPKGPPGPPGPPGVTGMD 702
Query: 288 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGP-QYP 346
Q P GN GP + G PP QQ PG QG PG Q GP G GP P
Sbjct: 703 GQPGPKGNV----------GPQGEPG-PPGQQGNPGAQGLPGPQGAIGP-PGEKGPLGKP 750
Query: 347 NYPQGQGQQYGGYRPTQPGPP-------QPPQQRPYGY 377
P G P + GPP P Q P GY
Sbjct: 751 GLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGY 788
Score = 55.1 bits (131), Expect = 1e-07
Identities = 81/324 (25%), Positives = 107/324 (33%), Gaps = 50/324 (15%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMP 134
LP PP + G G Q GPP PP PS GP P G + P +
Sbjct: 1232 LPGPPGEKGETGDVG--QMGPPGPPGPRG-PSGAPGADGPQGPP------GGIGNPGAVG 1282
Query: 135 MQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+G P G G S PS + P + P G+ GP
Sbjct: 1283 EKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP-- 1340
Query: 195 NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYR 254
+ + GP P Q G GQ G G+ PP +
Sbjct: 1341 -VGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSG--------PPGK 1391
Query: 255 --PPQQGPPQQYSGQEDYYGDQYSHGGQGP-----PEGMNQQYYPDG----NSQYGQQ-- 301
PP P+ G++ G+ G G P+G + PDG G+Q
Sbjct: 1392 RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGL 1451
Query: 302 --QDAYQGPPPQQGYP-----PQQQQYPGQQGYPGQ--------QQGYGPSQGGPGPQYP 346
GPP G P G++G+PG +QG +G PGPQ
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGS 1511
Query: 347 NYPQGQGQQYGGYRPTQPGPPQPP 370
+ P+G+ G P GPP PP
Sbjct: 1512 SGPKGEQGITGPSGPI--GPPGPP 1533
Score = 28.9 bits (63), Expect = 8.2
Identities = 39/162 (24%), Positives = 53/162 (32%), Gaps = 18/162 (11%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMP 134
L PP + P+GP G G P P DG+ G P P + + G PGP+ P
Sbjct: 1415 LEGPPGKTGPIGPQGA--PGKPGP--------DGL--RGIPGPVGEQGLPGS-PGPDGPP 1461
Query: 135 MQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
P + S H + G P Q + P G+ GP+
Sbjct: 1462 GPMGPPGLPGLKGDSGPKGEKGHPGLIGLI-GPPGEQGEKGDRGLP----GPQGSSGPKG 1516
Query: 195 NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 236
+ GP+ PP G + G P G G
Sbjct: 1517 EQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG 1558
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 63.2 bits (152), Expect = 4e-10
Identities = 98/336 (29%), Positives = 114/336 (33%), Gaps = 43/336 (12%)
Query: 69 QNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP 128
Q Q L +MP G GM G P S N+P V G P P M Q P
Sbjct: 1929 QQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSG-PVMPSMPPGQWQQAP 1987
Query: 129 GPNHMPMQG-PGP---NQLNMTNSSMNMPSS------SHGSMGGYNHSVPSSQSMPVQNQ 178
P PM G P P Q + MPS S ++ ++ S S Q Q
Sbjct: 1988 LPQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQ 2047
Query: 179 MT---MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM 235
+ S Q M + + NQ M PQ G Q G QP GM
Sbjct: 2048 VLNILKSNPQLMAAFIKQRTAKYVANQPGMQ-----------PQPGLQSQPGMQPQPGMH 2096
Query: 236 GQVNQGNHMMGQRQIP-PYRPPQQGPPQQYSGQEDYYGDQYS--HGGQGPP-EGMNQQYY 291
Q + N Q +P P PPQQ Q G + G + + G P MN QY
Sbjct: 2097 QQPSLQNLNAMQAGVPRPGVPPQQ----QAMGGLNPQGQALNIMNPGHNPNMASMNPQYR 2152
Query: 292 PDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQG 351
Q QQQ Q QQ QQQ G G G G+G Q GP YP
Sbjct: 2153 EMLRRQLLQQQQQQQQQQQQQ-----QQQQQGSAGMAGGMAGHGQFQQPQGP--GGYPPA 2205
Query: 352 QGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
QQ R Q P Q GQ G Q
Sbjct: 2206 MQQQ---QRMQQHLPLQGSSMGQMAAQMGQLGQMGQ 2238
Score = 33.9 bits (76), Expect = 0.26
Identities = 39/151 (25%), Positives = 48/151 (31%), Gaps = 36/151 (23%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNH 132
S LP PP P+ P PPP + MPS + P P
Sbjct: 803 SQLPCPPVTQSPLHP------TPPPASTAAGMPS----------------LQHTTP-PGM 839
Query: 133 MPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYG 191
P Q P Q PS+ S G P S Q Q T + Q
Sbjct: 840 TPPQPAAPTQ----------PSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVT 889
Query: 192 PRPNMSMQPNQ--GPMMHQQPPSQQYNMPQG 220
P+P +QP P QQ P+ + P G
Sbjct: 890 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPG 920
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 25/170 (14%)
Query: 188 GNYGPRPNMSMQPNQGPMMHQ----QPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNH 243
G G +P + Q P++ Q +PP+ ++P Q QG M ++ GN
Sbjct: 639 GILGNQPALPAPGAQPPVIPQAQPVRPPNGPLSLPVNRMQVSQG----MNSFNPMSLGNV 694
Query: 244 MMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD 303
+ Q + P + P +S Q + G P ++ P + G +
Sbjct: 695 QLPQAPMGP----RAASPMNHSVQMNSMGSV-------PGMAISPSRMPQPPNMMGAHTN 743
Query: 304 AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGG------PGPQYPN 347
P Q Q Q+P G G P+Q G PG PN
Sbjct: 744 NMMAQAPAQSQFLPQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPN 793
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 24/155 (15%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
ADS N+Q L Q M Q G P P P Q+ ++
Sbjct: 2243 ADSTPNIQQALQQRILQQQQM----KQQIGSPGQPN--------------PMSPQQHMLS 2284
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
GQ P +H+P Q + N S + S S ++ P Q P + ++ G
Sbjct: 2285 GQ-PQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTG 2343
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
P + G M+ +QG H P Q +PQ
Sbjct: 2344 SP--HPGLAVTMASSIDQG---HLGNPEQSAMLPQ 2373
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 63.2 bits (152), Expect = 4e-10
Identities = 98/336 (29%), Positives = 114/336 (33%), Gaps = 43/336 (12%)
Query: 69 QNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP 128
Q Q L +MP G GM G P S N+P V G P P M Q P
Sbjct: 1967 QQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSG-PVMPSMPPGQWQQAP 2025
Query: 129 GPNHMPMQG-PGP---NQLNMTNSSMNMPSS------SHGSMGGYNHSVPSSQSMPVQNQ 178
P PM G P P Q + MPS S ++ ++ S S Q Q
Sbjct: 2026 LPQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQ 2085
Query: 179 MT---MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM 235
+ S Q M + + NQ M PQ G Q G QP GM
Sbjct: 2086 VLNILKSNPQLMAAFIKQRTAKYVANQPGMQ-----------PQPGLQSQPGMQPQPGMH 2134
Query: 236 GQVNQGNHMMGQRQIP-PYRPPQQGPPQQYSGQEDYYGDQYS--HGGQGPP-EGMNQQYY 291
Q + N Q +P P PPQQ Q G + G + + G P MN QY
Sbjct: 2135 QQPSLQNLNAMQAGVPRPGVPPQQ----QAMGGLNPQGQALNIMNPGHNPNMASMNPQYR 2190
Query: 292 PDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQG 351
Q QQQ Q QQ QQQ G G G G+G Q GP YP
Sbjct: 2191 EMLRRQLLQQQQQQQQQQQQQ-----QQQQQGSAGMAGGMAGHGQFQQPQGP--GGYPPA 2243
Query: 352 QGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
QQ R Q P Q GQ G Q
Sbjct: 2244 MQQQ---QRMQQHLPLQGSSMGQMAAQMGQLGQMGQ 2276
Score = 33.9 bits (76), Expect = 0.26
Identities = 39/151 (25%), Positives = 48/151 (31%), Gaps = 36/151 (23%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNH 132
S LP PP P+ P PPP + MPS + P P
Sbjct: 841 SQLPCPPVTQSPLHP------TPPPASTAAGMPS----------------LQHTTP-PGM 877
Query: 133 MPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYG 191
P Q P Q PS+ S G P S Q Q T + Q
Sbjct: 878 TPPQPAAPTQ----------PSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVT 927
Query: 192 PRPNMSMQPNQ--GPMMHQQPPSQQYNMPQG 220
P+P +QP P QQ P+ + P G
Sbjct: 928 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPG 958
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 25/170 (14%)
Query: 188 GNYGPRPNMSMQPNQGPMMHQ----QPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNH 243
G G +P + Q P++ Q +PP+ ++P Q QG M ++ GN
Sbjct: 677 GILGNQPALPAPGAQPPVIPQAQPVRPPNGPLSLPVNRMQVSQG----MNSFNPMSLGNV 732
Query: 244 MMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD 303
+ Q + P + P +S Q + G P ++ P + G +
Sbjct: 733 QLPQAPMGP----RAASPMNHSVQMNSMGSV-------PGMAISPSRMPQPPNMMGAHTN 781
Query: 304 AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGG------PGPQYPN 347
P Q Q Q+P G G P+Q G PG PN
Sbjct: 782 NMMAQAPAQSQFLPQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPN 831
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 24/155 (15%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
ADS N+Q L Q M Q G P P P Q+ ++
Sbjct: 2281 ADSTPNIQQALQQRILQQQQM----KQQIGSPGQPN--------------PMSPQQHMLS 2322
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
GQ P +H+P Q + N S + S S ++ P Q P + ++ G
Sbjct: 2323 GQ-PQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTG 2381
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
P + G M+ +QG H P Q +PQ
Sbjct: 2382 SP--HPGLAVTMASSIDQG---HLGNPEQSAMLPQ 2411
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 63.2 bits (152), Expect = 4e-10
Identities = 55/153 (35%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQI 250
GP P +P QGP PP + P GG QG PP G QG+ R
Sbjct: 38 GPSPQGGNKP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Query: 251 P--PYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGP 308
P P PP QG Q + Q + G P+G QQ +GN+ QGP
Sbjct: 94 PGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ---EGNNP--------QGP 142
Query: 309 PPQQGYPPQQQQYP--GQ-QGYPGQQQGYGPSQ 338
PP G PQQ Q P GQ QG P QG PS+
Sbjct: 143 PPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 175
Score = 55.8 bits (133), Expect = 6e-08
Identities = 62/178 (34%), Positives = 70/178 (39%), Gaps = 45/178 (25%)
Query: 208 QQPPSQQYNMPQG----GGQHYQGQQPPMGM-MGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
++ PS PQG GG QG PP G G QG + Q PP +P QGPP
Sbjct: 26 EESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKP-QGPPPPGKP--QGPPP 82
Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP 322
Q GD+ S + PP G Q P G QGPP Q G Q + P
Sbjct: 83 Q--------GDK-SRSPRSPP-GKPQGPPPQGGKP--------QGPPAQGGSKSQSARSP 124
Query: 323 GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQG 380
PG+ QG P Q G PQ P P G G PQ PQ P G QG
Sbjct: 125 -----PGKPQG-PPQQEGNNPQGPPPPAG-------------GNPQQPQAPPAGQPQG 163
Score = 53.5 bits (127), Expect = 3e-07
Identities = 61/221 (27%), Positives = 77/221 (34%), Gaps = 60/221 (27%)
Query: 53 MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGP---GGMNQSGPPPPPRSHN--MPSD 107
+L L+ L++ + N+++ P GP GG GPPPPP P
Sbjct: 5 LLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQG 64
Query: 108 GMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSV 167
G GPP P G+ GP P Q + + S + P G
Sbjct: 65 GNKPQGPPPP-------GKPQGP---------PPQGDKSRSPRSPPGKPQG--------- 99
Query: 168 PSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQG-----GG 222
P Q G+P G + S P Q PP Q+ N PQG GG
Sbjct: 100 PPPQG-----------GKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGG 148
Query: 223 QHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQ 263
Q Q PP GQ Q PP RPPQ G P +
Sbjct: 149 NPQQPQAPP-------------AGQPQGPP-RPPQGGRPSR 175
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,982,493
Number of Sequences: 37866
Number of extensions: 1873157
Number of successful extensions: 17294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 942
Number of HSP's that attempted gapping in prelim test: 7618
Number of HSP's gapped (non-prelim): 5167
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.