SS18 33030

Name: SS18	Sequence: fasta or formatted (387aa)		NCBI GI: 56117844
Description: synovial sarcoma translocation, chromosome 18 isoform 2		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [418aa] synovial sarcoma translocation, chromosome 18 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.6 10 2 C cysteine 0.5 2 1 D aspartate 2.6 10 2 E glutamate 1.0 4 1 F phenylalanine 0.3 1 1 G glycine 14.7 57 3 H histidine 2.8 11 1 I isoleucine 1.6 6 1 K lysine 1.0 4 1 L leucine 2.1 8 2 M methionine 8.8 34 2 N asparagine 7.2 28 2 P proline 16.0 62 5 Q glutamine 19.4 75 4 R arginine 2.1 8 1 S serine 6.7 26 3 T threonine 2.1 8 1 V valine 1.6 6 1 W tryptophan 0.0 0 0 Y tyrosine 7.0 27 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma translocation, chromosome 18 isofor... SS18 0.981 synovial sarcoma translocation, chromosome 18 isofor... SS18L1 0.476 SS18-like protein 1 PRB2 0.097 proline-rich protein BstNI subfamily 2 PRB1 0.097 proline-rich protein BstNI subfamily 1 isoform 1 pre... PRB3 0.078 proline-rich protein BstNI subfamily 3 precursor [H... WDR33 0.076 WD repeat domain 33 isoform 1 SS18L2 0.070 synovial sarcoma translocation gene on chromosome 18... ARID1A 0.066 AT rich interactive domain 1A isoform a ARID1A 0.066 AT rich interactive domain 1A isoform b PRB4 0.062 proline-rich protein BstNI subfamily 4 precursor [Ho... ATN1 0.058 atrophin-1 ATN1 0.058 atrophin-1 SMARCA2 0.055 SWI/SNF-related matrix-associated actin-dependent re... SMARCA2 0.055 SWI/SNF-related matrix-associated actin-dependent re... PRB1 0.055 proline-rich protein BstNI subfamily 1 isoform 2 pre... SYN1 0.052 synapsin I isoform Ia SYN1 0.052 synapsin I isoform Ib MED12 0.050 mediator complex subunit 12 FUS 0.050 fusion (involved in t(12;16) in malignant liposarcoma... PRH2 0.049 proline-rich protein HaeIII subfamily 2 PRH2 0.049 proline-rich protein HaeIII subfamily 2 PRH1 0.049 proline-rich protein HaeIII subfamily 1 ARID1B 0.047 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.047 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.047 AT rich interactive domain 1B (SWI1-like) isoform 3 ... COL5A1 0.047 alpha 1 type V collagen preproprotein CREBBP 0.046 CREB binding protein isoform b CREBBP 0.046 CREB binding protein isoform a PRB1 0.046 proline-rich protein BstNI subfamily 1 isoform 3 pre... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.