| Name: SS18L1 | Sequence: fasta or formatted (396aa) | NCBI GI: 39777614 | |
|
Description: SS18-like protein 1
|
Referenced in: Additional Genes in Development
| ||
|
Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.1 28 2 C cysteine 0.5 2 1 D aspartate 1.5 6 1 E glutamate 3.3 13 2 F phenylalanine 0.5 2 1 G glycine 12.1 48 2 H histidine 2.8 11 2 I isoleucine 2.8 11 1 K lysine 1.0 4 1 L leucine 4.3 17 2 M methionine 4.0 16 2 N asparagine 3.5 14 1 P proline 6.6 26 2 Q glutamine 19.4 77 3 R arginine 2.3 9 1 S serine 13.1 52 2 T threonine 4.8 19 2 V valine 1.8 7 1 W tryptophan 0.0 0 0 Y tyrosine 8.6 34 2 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 SS18-like protein 1 SS18 0.585 synovial sarcoma translocation, chromosome 18 isofor... SS18 0.499 synovial sarcoma translocation, chromosome 18 isofor... SS18L2 0.088 synovial sarcoma translocation gene on chromosome 18... ARID1A 0.053 AT rich interactive domain 1A isoform a ARID1A 0.053 AT rich interactive domain 1A isoform b FLG2 0.052 filaggrin family member 2 HRNR 0.051 hornerin TAF15 0.051 TBP-associated factor 15 isoform 1 ILF3 0.048 interleukin enhancer binding factor 3 isoform d [Ho... ILF3 0.048 interleukin enhancer binding factor 3 isoform a [Hom... RPTN 0.048 repetin TAF15 0.045 TBP-associated factor 15 isoform 2 ARID1B 0.043 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.043 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.043 AT rich interactive domain 1B (SWI1-like) isoform 3 ... EWSR1 0.038 Ewing sarcoma breakpoint region 1 isoform 4 EWSR1 0.038 Ewing sarcoma breakpoint region 1 isoform 1 FUS 0.038 fusion (involved in t(12;16) in malignant liposarcoma... PAXIP1 0.037 PAX interacting protein 1 TCF20 0.037 transcription factor 20 isoform 2 TCF20 0.037 transcription factor 20 isoform 1 FLG 0.037 filaggrin MAML2 0.034 mastermind-like 2 EWSR1 0.034 Ewing sarcoma breakpoint region 1 isoform 5 EWSR1 0.034 Ewing sarcoma breakpoint region 1 isoform 3 EWSR1 0.034 Ewing sarcoma breakpoint region 1 isoform 2 MLL2 0.034 myeloid/lymphoid or mixed-lineage leukemia 2 MED12 0.032 mediator complex subunit 12 GRINA 0.031 glutamate receptor, ionotropic, N-methyl D-aspartate...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
