SS18 33031

Name: SS18	Sequence: fasta or formatted (418aa)		NCBI GI: 56117846
Description: synovial sarcoma translocation, chromosome 18 isoform 1		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [387aa] synovial sarcoma translocation, chromosome 18 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.4 10 2 C cysteine 0.5 2 1 D aspartate 3.1 13 2 E glutamate 1.7 7 1 F phenylalanine 0.2 1 1 G glycine 14.6 61 3 H histidine 3.1 13 1 I isoleucine 1.4 6 1 K lysine 1.0 4 1 L leucine 1.9 8 2 M methionine 8.1 34 2 N asparagine 6.9 29 2 P proline 15.6 65 5 Q glutamine 18.9 79 4 R arginine 2.2 9 1 S serine 6.9 29 3 T threonine 1.9 8 1 V valine 1.4 6 1 W tryptophan 0.0 0 0 Y tyrosine 8.1 34 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma translocation, chromosome 18 isofor... SS18 0.893 synovial sarcoma translocation, chromosome 18 isofor... SS18L1 0.513 SS18-like protein 1 PRB2 0.097 proline-rich protein BstNI subfamily 2 PRB1 0.081 proline-rich protein BstNI subfamily 1 isoform 1 pre... WDR33 0.074 WD repeat domain 33 isoform 1 PRB3 0.070 proline-rich protein BstNI subfamily 3 precursor [H... SS18L2 0.065 synovial sarcoma translocation gene on chromosome 18... PRB4 0.061 proline-rich protein BstNI subfamily 4 precursor [Ho... ATN1 0.055 atrophin-1 ATN1 0.055 atrophin-1 ARID1A 0.052 AT rich interactive domain 1A isoform a ARID1A 0.052 AT rich interactive domain 1A isoform b CREBBP 0.050 CREB binding protein isoform b CREBBP 0.050 CREB binding protein isoform a EP300 0.049 E1A binding protein p300 SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.047 SWI/SNF-related matrix-associated actin-dependent re... SMARCA2 0.046 SWI/SNF-related matrix-associated actin-dependent re... SMARCA2 0.046 SWI/SNF-related matrix-associated actin-dependent re... RBM33 0.046 RNA binding motif protein 33 FUS 0.045 fusion (involved in t(12;16) in malignant liposarcoma... PRH1 0.045 proline-rich protein HaeIII subfamily 1 COL5A3 0.042 collagen, type V, alpha 3 preproprotein PRH2 0.042 proline-rich protein HaeIII subfamily 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.