Guide to the Human Genome
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Name: SMARCA2 Sequence: fasta or formatted (1572aa) NCBI GI: 48255898
Description:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b

Referenced in:

Bromodomain Family
Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [1590aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         94           3
 C cysteine            0.6         10           1
 D aspartate           5.2         81           2
 E glutamate           9.7        153           6
 F phenylalanine       2.2         34           1
 G glycine             5.7         90           3
 H histidine           2.5         39           2
 I isoleucine          4.5         71           2
 K lysine              7.8        123           3
 L leucine             9.1        143           2
 M methionine          3.1         48           2
 N asparagine          3.4         53           3
 P proline             7.6        120           2
 Q glutamine           7.8        122          23
 R arginine            6.7        106           4
 S serine              6.5        102           3
 T threonine           4.0         63           2
 V valine              4.3         67           2
 W tryptophan          0.8         12           1
 Y tyrosine            2.6         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related matrix-associated actin-dependent re... 
SMARCA2               0.996   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.765   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.764   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.763   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.762   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.758   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.758   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.753   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.135   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.132   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.130   SWI/SNF-related matrix-associated actin-dependent re...
CHD2                  0.122   chromodomain helicase DNA binding protein 2 isoform...
CHD3                  0.120   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.120   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.120   chromodomain helicase DNA binding protein 3 isoform...
CHD4                  0.117   chromodomain helicase DNA binding protein 4 
CHD1                  0.117   chromodomain helicase DNA binding protein 1 
CHD7                  0.116   chromodomain helicase DNA binding protein 7 
CHD5                  0.115   chromodomain helicase DNA binding protein 5 
HELLS                 0.113   helicase, lymphoid-specific 
CHD8                  0.112   chromodomain helicase DNA binding protein 8 
CHD6                  0.108   chromodomain helicase DNA binding protein 6 
CHD9                  0.107   chromodomain helicase DNA binding protein 9 
CHD1L                 0.103   chromodomain helicase DNA binding protein 1-like [H...
SMARCAD1              0.089   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.088   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.088   SWI/SNF-related, matrix-associated actin-dependent ...
SRCAP                 0.078   Snf2-related CBP activator protein 
ERCC6                 0.076   excision repair cross-complementing rodent repair def...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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