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Search of human proteins with 54112113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens] 281 1e-76
gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens] 274 2e-74
gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens] 274 2e-74
gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens] 274 2e-74
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 274 2e-74
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 274 2e-74
gi|14249622 ajuba isoform 1 [Homo sapiens] 37 0.005
gi|38194224 G protein-coupled receptor 25 [Homo sapiens] 35 0.018
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.041
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.054
gi|116812620 hypothetical protein LOC147965 [Homo sapiens] 33 0.054
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 33 0.070
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 33 0.070
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 33 0.070
gi|61744445 ficolin 2 isoform a precursor [Homo sapiens] 32 0.12
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 32 0.12
gi|122937215 prospero homeobox 2 [Homo sapiens] 32 0.12
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 32 0.16
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 32 0.16
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 32 0.16
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 32 0.16
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 32 0.16
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.20
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 32 0.20
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 31 0.27
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 31 0.27
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 31 0.27
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 31 0.27
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 31 0.27
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 31 0.35
>gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens]
Length = 135
Score = 281 bits (719), Expect = 1e-76
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQGHQ 135
AALHSDSQDGHQGHQ
Sbjct: 121 AALHSDSQDGHQGHQ 135
>gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens]
Length = 142
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens]
Length = 147
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens]
Length = 178
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 37.0 bits (84), Expect = 0.005
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 64 LRSELRRERGAESRLGGSGTPGT-SGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAA 122
L + R +G SR G GTPG G LS LGG P + G P +PLEP
Sbjct: 11 LLEKFGRRKGESSRSGSDGTPGPGKGRLSGLGGPRKSGPRGATGG---PGDEPLEPAREQ 67
Query: 123 LHSDSQDGHQG 133
D++ +G
Sbjct: 68 GSLDAERNQRG 78
>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
Length = 361
Score = 35.0 bits (79), Expect = 0.018
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 2 GYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCY 61
G P + R L P G Q CG P+ A +G S LL L F L L ++TL CY
Sbjct: 171 GLPSLVYRGLQPLP-----GGQDSQCGEEPSHAFQGLSLLLLLLTFVLPL---VVTLFCY 222
Query: 62 LELRSELRR 70
+ LRR
Sbjct: 223 CRISRRLRR 231
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 33.9 bits (76), Expect = 0.041
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP-----ITSHLGQPSPKQQPLEPGEAALHS 125
ERG + +G G PG G LG P P +T GQP PK GE
Sbjct: 662 ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG--P 719
Query: 126 DSQDGHQGHQ 135
Q G+ G Q
Sbjct: 720 PGQQGNPGAQ 729
Score = 28.1 bits (61), Expect = 2.3
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 29/103 (28%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRE 71
P P E+G G G G P R G S +GF G
Sbjct: 857 PLGPPGEKGKLGVPGLPGYPGRQGPKGS----IGFPGFP--------------------- 891
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDP--DSPITSHLGQPSPK 112
GA GG GTPG G G P + G+P PK
Sbjct: 892 -GANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPK 933
Score = 27.7 bits (60), Expect = 2.9
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R E+G G +G PG G G P+ G P P EPG A Q
Sbjct: 1308 RGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV----GFPGDPGPPGEPGPA-----GQ 1358
Query: 129 DGHQG 133
DG G
Sbjct: 1359 DGPPG 1363
Score = 27.3 bits (59), Expect = 3.8
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG-EAALHSDSQD 129
E+G + G G G+SG G P PI G P P P PG + A S
Sbjct: 1496 EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI----GPPGPPGLPGPPGPKGAKGSSGPT 1551
Query: 130 GHQG 133
G +G
Sbjct: 1552 GPKG 1555
Score = 26.9 bits (58), Expect = 5.0
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP--ITSHLGQPSPKQQPLEPGEA 121
E+G +G G PG G G D P +G P + EPGEA
Sbjct: 1238 EKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEA 1290
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.5 bits (75), Expect = 0.054
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 72 RGAESRLGGSGTPGTSGTLSS--LGGLDPDSPITSHLGQPSPKQQPLEPGE 120
+G+ LG +G PG G L G D I LG P PK + E GE
Sbjct: 1284 KGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGE 1334
Score = 30.8 bits (68), Expect = 0.35
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGEAALHS 125
E G + G G PG G G PD P G P P+ +P PG+ +
Sbjct: 1043 EPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAG 1102
Query: 126 DSQDGHQG 133
+ GH G
Sbjct: 1103 ER--GHLG 1108
Score = 30.8 bits (68), Expect = 0.35
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHSD 126
RG G SG PGT G G P PI G P +P PGEA + D
Sbjct: 1110 RGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGD 1169
>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
Length = 349
Score = 33.5 bits (75), Expect = 0.054
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 26 GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRERGAESRLGGSGTPG 85
G GG P A G SC F G + LA L TL E +RE GAE G G
Sbjct: 22 GYGGVPGAASRGASCPDFRGLC-VRLAAELATLGAL-----EQQREAGAEVLSAGDGPGA 75
Query: 86 TSGTLSSLGGL 96
L LG L
Sbjct: 76 EEDFLRQLGSL 86
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 33.1 bits (74), Expect = 0.070
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 64 LRSE--LRRERGAESRLGGSGTPGTSG-TLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
LR E +R ++G G G PG SG T+ G G+P P+ +P PG+
Sbjct: 142 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGD 201
Query: 121 AALHSDSQDGHQG 133
L D+ G G
Sbjct: 202 RGLKGDNGVGQPG 214
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 33.1 bits (74), Expect = 0.070
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
++ GA+ G G PG G + S G +S + +G PK QP +PG
Sbjct: 726 IQGHHGAKGERGEKGEPGVRGAIGSKG----ESGVDGLMGPAGPKGQPGDPG 773
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 33.1 bits (74), Expect = 0.070
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G + G G PG SG + G SH G P PK +P PG
Sbjct: 1048 GDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPG 1094
Score = 29.3 bits (64), Expect = 1.0
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G G GTPG G G P H G+P K QP PG
Sbjct: 984 GFPGERGDKGTPGMQGRRGEPGRYGPPG---FHRGEPGEKGQPGPPG 1027
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHS-DSQDGH 131
G + G G PG G++ L G D + G P P P PG D +DG
Sbjct: 1267 GPDGPRGAPGPPGLPGSVDLLRGEPGDCGLP---GPPGPPGPPGPPGYKGFPGCDGKDGQ 1323
Query: 132 QG 133
+G
Sbjct: 1324 KG 1325
Score = 27.7 bits (60), Expect = 2.9
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 73 GAESRLGGSGTPGTS---------GTLSS--LGGLDPDSPITSHLGQPSPKQQPLEPGEA 121
G++ G GTPGT+ G + GG SP+ G P P P G+
Sbjct: 701 GSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPV----GPPGPPGSPGVNGQK 756
Query: 122 ALHSDSQDGHQG 133
+ D GH G
Sbjct: 757 GIPGDPAFGHLG 768
>gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]
Length = 313
Score = 32.3 bits (72), Expect = 0.12
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 42 LFLGFFGLSLALHLLTLC-----CYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGL 96
L L F G++ AL C LE +L RG G G G +GT G
Sbjct: 15 LLLSFLGMAWALQAADTCPEVKMVGLEGSDKLTILRGCPGLPGAPGPKGEAGTNGKRGER 74
Query: 97 DPDSPITSHLGQPSPKQQPLEP 118
P P G P P P EP
Sbjct: 75 GPPGP-PGKAGPPGPNGAPGEP 95
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.3 bits (72), Expect = 0.12
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPG 119
++G G +G PG G S+G + P P H G P P P PG
Sbjct: 1375 QKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPG 1425
Score = 29.6 bits (65), Expect = 0.78
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQG 133
G +G PG G ++G P H+G P P P +PG A + + G +G
Sbjct: 1267 GSTGRPGAEGEPGAMGPQGRPGP-PGHVGPPGP---PGQPGPAGISAVGLKGDRG 1317
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLG--GLDPD---SPITSHLGQPSPKQQPLEPG 119
RG+ G G PG G + S G GL + + +T G+P P QP PG
Sbjct: 1041 RGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPG 1093
Score = 26.2 bits (56), Expect = 8.6
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 73 GAESRLGGSGTPGTSGTLS-SLGGLDPDSPITSHLG------QPSPKQQPLEPGEAALHS 125
G +G G PG G S GL D T G QP P P PGE +
Sbjct: 1288 GPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPG--T 1345
Query: 126 DSQDGHQG 133
D G +G
Sbjct: 1346 DGAAGKEG 1353
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 32.3 bits (72), Expect = 0.12
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 8 RRELLPAAAPRE--RGSQGCGCGGAPARAGEGNSC 40
+ +L AA PR+ +G GCG G P A +GN C
Sbjct: 147 QEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGC 181
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.0 bits (71), Expect = 0.16
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG-EAALHSDS 127
R ERG G +GTPG G + G P P+ G P EPG E +D
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPV----GPPGSNGPVGEPGPEGPAGNDG 1056
Query: 128 QDGHQG 133
G G
Sbjct: 1057 TPGRDG 1062
Score = 30.0 bits (66), Expect = 0.59
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAAL 123
R ERG G G G G GG PD P G P P P + G L
Sbjct: 710 RGERGNPGERGEPGITGLPGEKGMAGGHGPDGP----KGSPGPSGTPGDTGPPGL 760
Score = 29.3 bits (64), Expect = 1.0
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPG 119
+RG G GT G G G L P P T G+P P+ PG
Sbjct: 778 DRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPG 828
Score = 29.3 bits (64), Expect = 1.0
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
G G G+ G +G ++G P P GQP K +P EPG+
Sbjct: 825 GPPGSRGNPGSRGENGPTGAVGFAGPQGPD----GQPGVKGEPGEPGQ 868
Score = 28.5 bits (62), Expect = 1.7
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDS-QD 129
E G E G GTPG G + G P G P + P PG D+ Q
Sbjct: 1045 EPGPEGPAGNDGTPGRDGAVGERGDRGDPGP----AGLPGSQGAPGTPGPVGAPGDAGQR 1100
Query: 130 GHQG 133
G G
Sbjct: 1101 GDPG 1104
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 73 GAESRLGGSGTPGTSGTLSSLG-----------GLDPDSPITSHLGQPSPKQQPLEPGEA 121
G R G +G PG+ G G G+D + + G P P P PG
Sbjct: 126 GIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPD 185
Query: 122 AL 123
L
Sbjct: 186 GL 187
Score = 26.9 bits (58), Expect = 5.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPK---QQPLEPGEA 121
+G E +LG G PG G G + S +G P PK P +PGEA
Sbjct: 581 QGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGS-MGLPGPKGSSGDPGKPGEA 632
Score = 26.9 bits (58), Expect = 5.0
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALH 124
L+ RG + G +G PG++G + G P LG+P + P G+ H
Sbjct: 895 LKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP-AGPLGEPGKEGPPGLRGDPGSH 950
Score = 26.2 bits (56), Expect = 8.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSP-ITSHLGQPSPKQQPLEPG 119
G G +G+PGTSG S G P SP G + QP +PG
Sbjct: 426 GTPGAKGPTGSPGTSGPPGSAG--PPGSPGPQGSTGPQGIRGQPGDPG 471
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 32.0 bits (71), Expect = 0.16
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPG 119
E G++ G G PG SG L GL D+ T + G P PK QP E G
Sbjct: 1046 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESG 1091
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 460 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 499
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 32.0 bits (71), Expect = 0.16
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPG 119
E G++ G G PG SG L GL D+ T + G P PK QP E G
Sbjct: 1045 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESG 1090
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 459 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 498
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 32.0 bits (71), Expect = 0.16
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 32.0 bits (71), Expect = 0.16
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
ERG G G PG +G + G P P G+ K +P PG+ A+ + G
Sbjct: 1496 ERGPPGPAGSRGLPGVAGRPGAKGPEGPPGP----TGRQGEKGEPGRPGDPAVVGPAVAG 1551
Query: 131 HQGHQ 135
+G +
Sbjct: 1552 PKGEK 1556
Score = 30.0 bits (66), Expect = 0.59
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
E GA ++ G PG G G P P LG P P+ P PG A G
Sbjct: 1348 EPGAPGQVIGGEGPGLPGRKGDPGPSGPPGP-RGPLGDPGPRGPPGLPGTAMKGDKGDRG 1406
Query: 131 HQG 133
+G
Sbjct: 1407 ERG 1409
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPGEAALHSDSQDG 130
+G + G G PG GG+ P P L G P P+ PG+ DS+DG
Sbjct: 1399 KGDKGDRGERGPPGPGE-----GGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDG 1453
Query: 131 HQG 133
G
Sbjct: 1454 APG 1456
Score = 26.9 bits (58), Expect = 5.0
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGL----DPDSPITSHLGQPSPKQQPLEPG 119
ERG + R G G PGT G G +P ++ G P K EPG
Sbjct: 2068 ERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPG 2120
Score = 26.6 bits (57), Expect = 6.6
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R E+G G G PG GT P P G P PK EPG
Sbjct: 2063 RGEKGERGEQGRDGPPGLPGT--------PGPP-----GPPGPKVSVDEPGPGLSGEQGP 2109
Query: 129 DGHQG 133
G +G
Sbjct: 2110 PGLKG 2114
Score = 26.2 bits (56), Expect = 8.6
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQ---PSPKQQPLEPGEAAL 123
E+G + G G PG G G P P LG+ P P EPG+ +
Sbjct: 1986 EQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGI 2041
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 31.6 bits (70), Expect = 0.20
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDS 127
L + RG G G PG G S G+D D+ G P PK EPG+A D
Sbjct: 22 LAQIRGPPGERGPPGPPGPPGVPGS-DGIDGDNGPPGKAGPPGPKG---EPGKAG--PDG 75
Query: 128 QDGHQG 133
DG G
Sbjct: 76 PDGKPG 81
Score = 30.0 bits (66), Expect = 0.59
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGL----------DPDSPITSHLGQPSPKQQPLEPGE 120
++G G G PG G + +G DP H G P P P PG
Sbjct: 569 KQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGR 628
Query: 121 AALHSDSQDGHQG 133
+ +DG +G
Sbjct: 629 PGQAINGKDGDRG 641
Score = 27.7 bits (60), Expect = 2.9
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 79 GGSGTPGTSGTLSSLGGL-DPDSP----ITSHLGQPSPKQQPLEPGE 120
G GTPGT G S G P SP + GQP K P + GE
Sbjct: 307 GKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGE 353
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 31.2 bits (69), Expect = 0.27
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGH 131
+G+ G G PG GT + G P I H G+ P+ +P PG SD GH
Sbjct: 550 KGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH-GEKGPQGKPGLPGMPG--SDGPPGH 606
Query: 132 QGHQ 135
G +
Sbjct: 607 PGKE 610
Score = 31.2 bits (69), Expect = 0.27
Identities = 45/135 (33%), Positives = 49/135 (36%), Gaps = 22/135 (16%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSEL--- 68
P E+G G G G P R G S L F GF G S L R E
Sbjct: 699 PPGLMGEKGKLGVPGLPGYPGRQGPKGS-LGFPGFPGASGEKGARGLSGKSGPRGERGPT 757
Query: 69 --RRERGAESRLGGSGTPGTSGTLSSLG-----GL-DPDSPITSHLGQPSPKQQPLEPGE 120
R +RG G SG GTSG G GL P P G P PK P PG+
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGP----NGFPGPKGPPGPPGK 813
Query: 121 AALHSDSQDGHQGHQ 135
D GH G +
Sbjct: 814 -----DGLPGHPGQR 823
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD------ 126
G + G SG PG +G+ G PI G+P P+ P GE + +
Sbjct: 914 GLKGNEGPSGPPGPAGSPGERGAAGSGGPI-GPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972
Query: 127 -SQDGHQG 133
+DG QG
Sbjct: 973 TGRDGVQG 980
Score = 28.1 bits (61), Expect = 2.3
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
E G + +G G GT G G P PI +GQP EPG G
Sbjct: 996 EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGAR--------G 1046
Query: 131 HQGH 134
QGH
Sbjct: 1047 PQGH 1050
Score = 28.1 bits (61), Expect = 2.3
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD-SQDG 130
RG G SG PG G G D P G P P P +PG QDG
Sbjct: 1147 RGERGEKGESGQPGEPGPPGPKGPTGDDGP----KGNPGPVGFPGDPGPPGEGGPRGQDG 1202
Query: 131 HQG 133
+G
Sbjct: 1203 AKG 1205
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
G+E R GG G G G + + G P P G+P P
Sbjct: 1241 GSEGRQGGKGAKGDPGAIGAPGKTGPVGP-AGPAGKPGP 1278
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHS 125
E+G +G G PG G G D P +LG P K +P E G +
Sbjct: 1080 EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQG 1139
Query: 126 D 126
+
Sbjct: 1140 E 1140
Score = 27.3 bits (59), Expect = 3.8
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLG--------------GLD-PDSPITS--HLGQPSPKQ 113
ERG + +G G PG SG LG G+D P P S G+P P
Sbjct: 504 ERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPG 563
Query: 114 QPLEPGEAAL 123
Q PG L
Sbjct: 564 QQGTPGTQGL 573
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 31.2 bits (69), Expect = 0.27
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGH 131
+G+ G G PG GT + G P I H G+ P+ +P PG SD GH
Sbjct: 529 KGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH-GEKGPQGKPGLPGMPG--SDGPPGH 585
Query: 132 QGHQ 135
G +
Sbjct: 586 PGKE 589
Score = 31.2 bits (69), Expect = 0.27
Identities = 45/135 (33%), Positives = 49/135 (36%), Gaps = 22/135 (16%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSEL--- 68
P E+G G G G P R G S L F GF G S L R E
Sbjct: 678 PPGLMGEKGKLGVPGLPGYPGRQGPKGS-LGFPGFPGASGEKGARGLSGKSGPRGERGPT 736
Query: 69 --RRERGAESRLGGSGTPGTSGTLSSLG-----GL-DPDSPITSHLGQPSPKQQPLEPGE 120
R +RG G SG GTSG G GL P P G P PK P PG+
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGP----NGFPGPKGPPGPPGK 792
Query: 121 AALHSDSQDGHQGHQ 135
D GH G +
Sbjct: 793 -----DGLPGHPGQR 802
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD------ 126
G + G SG PG +G+ G PI G+P P+ P GE + +
Sbjct: 893 GLKGNEGPSGPPGPAGSPGERGAAGSGGPI-GPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951
Query: 127 -SQDGHQG 133
+DG QG
Sbjct: 952 TGRDGVQG 959
Score = 28.1 bits (61), Expect = 2.3
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
E G + +G G GT G G P PI +GQP EPG G
Sbjct: 975 EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGAR--------G 1025
Query: 131 HQGH 134
QGH
Sbjct: 1026 PQGH 1029
Score = 28.1 bits (61), Expect = 2.3
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD-SQDG 130
RG G SG PG G G D P G P P P +PG QDG
Sbjct: 1126 RGERGEKGESGQPGEPGPPGPKGPTGDDGP----KGNPGPVGFPGDPGPPGEGGPRGQDG 1181
Query: 131 HQG 133
+G
Sbjct: 1182 AKG 1184
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
G+E R GG G G G + + G P P G+P P
Sbjct: 1220 GSEGRQGGKGAKGDPGAIGAPGKTGPVGP-AGPAGKPGP 1257
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHS 125
E+G +G G PG G G D P +LG P K +P E G +
Sbjct: 1059 EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQG 1118
Query: 126 D 126
+
Sbjct: 1119 E 1119
Score = 27.3 bits (59), Expect = 3.8
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLG--------------GLD-PDSPITS--HLGQPSPKQ 113
ERG + +G G PG SG LG G+D P P S G+P P
Sbjct: 483 ERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPG 542
Query: 114 QPLEPGEAAL 123
Q PG L
Sbjct: 543 QQGTPGTQGL 552
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 31.2 bits (69), Expect = 0.27
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGH 131
+G+ G G PG GT + G P I H G+ P+ +P PG SD GH
Sbjct: 636 KGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH-GEKGPQGKPGLPGMPG--SDGPPGH 692
Query: 132 QGHQ 135
G +
Sbjct: 693 PGKE 696
Score = 31.2 bits (69), Expect = 0.27
Identities = 45/135 (33%), Positives = 49/135 (36%), Gaps = 22/135 (16%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSEL--- 68
P E+G G G G P R G S L F GF G S L R E
Sbjct: 785 PPGLMGEKGKLGVPGLPGYPGRQGPKGS-LGFPGFPGASGEKGARGLSGKSGPRGERGPT 843
Query: 69 --RRERGAESRLGGSGTPGTSGTLSSLG-----GL-DPDSPITSHLGQPSPKQQPLEPGE 120
R +RG G SG GTSG G GL P P G P PK P PG+
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGP----NGFPGPKGPPGPPGK 899
Query: 121 AALHSDSQDGHQGHQ 135
D GH G +
Sbjct: 900 -----DGLPGHPGQR 909
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD------ 126
G + G SG PG +G+ G PI G+P P+ P GE + +
Sbjct: 1000 GLKGNEGPSGPPGPAGSPGERGAAGSGGPI-GPPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058
Query: 127 -SQDGHQG 133
+DG QG
Sbjct: 1059 TGRDGVQG 1066
Score = 28.1 bits (61), Expect = 2.3
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
E G + +G G GT G G P PI +GQP EPG G
Sbjct: 1082 EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPI-GPVGQPGAAGADGEPGAR--------G 1132
Query: 131 HQGH 134
QGH
Sbjct: 1133 PQGH 1136
Score = 28.1 bits (61), Expect = 2.3
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD-SQDG 130
RG G SG PG G G D P G P P P +PG QDG
Sbjct: 1233 RGERGEKGESGQPGEPGPPGPKGPTGDDGP----KGNPGPVGFPGDPGPPGEGGPRGQDG 1288
Query: 131 HQG 133
+G
Sbjct: 1289 AKG 1291
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
G+E R GG G G G + + G P P G+P P
Sbjct: 1327 GSEGRQGGKGAKGDPGAIGAPGKTGPVGP-AGPAGKPGP 1364
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHS 125
E+G +G G PG G G D P +LG P K +P E G +
Sbjct: 1166 EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQG 1225
Query: 126 D 126
+
Sbjct: 1226 E 1226
Score = 27.3 bits (59), Expect = 3.8
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLG--------------GLD-PDSPITS--HLGQPSPKQ 113
ERG + +G G PG SG LG G+D P P S G+P P
Sbjct: 590 ERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPG 649
Query: 114 QPLEPGEAAL 123
Q PG L
Sbjct: 650 QQGTPGTQGL 659
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 31.2 bits (69), Expect = 0.27
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEA 121
ERG G GTPGT G G P G+ P P +PGEA
Sbjct: 423 ERGGPGERGPRGTPGTRGPRGDPGEAGPQ----GDQGREGPVGVPGDPGEA 469
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 31.2 bits (69), Expect = 0.27
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 66 SELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
S+ ERG G G PG G + + G+D D G P P +P +PG
Sbjct: 262 SQTTDERGPPGEQGPPGPPGPPG-VPGIDGIDGDRGPKGPPGPPGPAGEPGKPG 314
Score = 29.3 bits (64), Expect = 1.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAAL 123
+RGAE G G PG G + L G+D I G +P PG+A L
Sbjct: 518 DRGAEGARGIPGLPGPKGD-TGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGL 569
Score = 27.3 bits (59), Expect = 3.8
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 73 GAESRLGGSGTPGTSGTLSSLG-----------GLDPDSPITSHLGQPSPKQQPLEPGE 120
G+ LG G+PG G L SLG GL +G+P PK + GE
Sbjct: 625 GSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGE 683
Score = 27.3 bits (59), Expect = 3.8
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDS----------PITSHLGQPSPKQQPLEPGE 120
E G ++G G PG G +LG P P G P P +PG
Sbjct: 806 ENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGP 865
Query: 121 AALHSDSQDGHQG 133
A+ + +DG +G
Sbjct: 866 ASYGRNGRDGERG 878
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 30.8 bits (68), Expect = 0.35
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDG 130
+RGA+ G G PG ++ GL + G P P P + A H + G
Sbjct: 1501 DRGAKGLRGDPGAPGVDSSIEGPTGLKGERGRQGRRGWPGPPGTPGSRRKTAAH--GRRG 1558
Query: 131 HQGHQ 135
H G Q
Sbjct: 1559 HTGPQ 1563
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 68 LRRERGAESRLGGSGTPGTSGT 89
L+ ERG + R G G PGT G+
Sbjct: 1526 LKGERGRQGRRGWPGPPGTPGS 1547
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,837,142
Number of Sequences: 37866
Number of extensions: 356349
Number of successful extensions: 2003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 603
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.