PAAF1 3228

Name: PAAF1	Sequence: fasta or formatted (392aa)		NCBI GI: 13376751
Description: proteasomal ATPase-associated factor 1		Referenced in: Proteasome WD Repeat Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 29 2 C cysteine 4.3 17 2 D aspartate 6.6 26 1 E glutamate 4.1 16 1 F phenylalanine 3.6 14 2 G glycine 9.9 39 2 H histidine 1.5 6 1 I isoleucine 5.4 21 1 K lysine 4.1 16 2 L leucine 10.2 40 3 M methionine 1.3 5 1 N asparagine 2.8 11 1 P proline 3.6 14 2 Q glutamine 4.3 17 2 R arginine 5.6 22 2 S serine 9.9 39 3 T threonine 4.8 19 2 V valine 7.1 28 2 W tryptophan 1.5 6 1 Y tyrosine 1.8 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasomal ATPase-associated factor 1 TBL3 0.087 transducin beta-like 3 WDR5 0.080 WD repeat domain 5 WDR5 0.080 WD repeat domain 5 WDR69 0.078 WD repeat domain 69 WDR5B 0.077 WD repeat domain 5B TAF5 0.071 TBP-associated factor 5 PAFAH1B1 0.069 platelet-activating factor acetylhydrolase, isoform I... FBXW7 0.067 F-box and WD repeat domain containing 7 isoform 3 [H... FBXW7 0.067 F-box and WD repeat domain containing 7 isoform 1 [H... FBXW7 0.067 F-box and WD repeat domain containing 7 isoform 2 [H... TAF5L 0.066 PCAF associated factor 65 beta isoform a WDR88 0.064 PQQ repeat and WD repeat domain containing WDR86 0.064 WD repeat domain 86 GNB2 0.062 guanine nucleotide-binding protein, beta-2 subunit [... PRPF19 0.060 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom... FBXW11 0.060 F-box and WD repeat domain containing 11 isoform C [... SPAG16 0.060 sperm associated antigen 16 isoform 1 FBXW11 0.060 F-box and WD repeat domain containing 11 isoform A [... FBXW11 0.060 F-box and WD repeat domain containing 11 isoform B [... GNB1 0.058 guanine nucleotide-binding protein, beta-1 subunit [... GNB4 0.057 guanine nucleotide-binding protein, beta-4 subunit [... WDR51A 0.057 WD repeat domain 51A isoform 3 WDR51A 0.057 WD repeat domain 51A isoform 2 WDR51A 0.057 WD repeat domain 51A isoform 1 PLRG1 0.057 pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [... WDR61 0.057 WD repeat domain 61 GNB3 0.057 guanine nucleotide-binding protein, beta-3 subunit [H... WDR3 0.056 WD repeat-containing protein 3 KATNB1 0.056 katanin p80 subunit B 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.