Guide to the Human Genome
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Name: WDR5 Sequence: fasta or formatted (334aa) NCBI GI: 16554629
Description:

WD repeat domain 5

Referenced in:

Cullins and SCF Complexes
Histones, Related Proteins, and Modifying Enzymes
WD Repeat Proteins

Other entries for this name:
alt mRNA [334aa] WD repeat domain 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         23           2
 C cysteine            3.0         10           2
 D aspartate           6.6         22           3
 E glutamate           3.6         12           2
 F phenylalanine       3.3         11           1
 G glycine             6.0         20           2
 H histidine           2.4          8           1
 I isoleucine          5.7         19           2
 K lysine             10.5         35           2
 L leucine             8.1         27           2
 M methionine          0.3          1           1
 N asparagine          5.1         17           1
 P proline             4.2         14           2
 Q glutamine           2.1          7           1
 R arginine            1.2          4           1
 S serine             12.0         40           3
 T threonine           7.2         24           1
 V valine              6.3         21           2
 W tryptophan          3.0         10           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 5 
WDR5                  1.000   WD repeat domain 5 
WDR5B                 0.845   WD repeat domain 5B 
PAFAH1B1              0.244   platelet-activating factor acetylhydrolase, isoform I...
WDR69                 0.242   WD repeat domain 69 
SNRNP40               0.221   WD repeat domain 57 (U5 snRNP specific) 
FBXW7                 0.217   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.217   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.217   F-box and WD repeat domain containing 7 isoform 2 [H...
MORG1                 0.197   mitogen-activated protein kinase organizer 1 
MORG1                 0.197   mitogen-activated protein kinase organizer 1 
WDR51A                0.192   WD repeat domain 51A isoform 3 
WDR51B                0.186   WD repeat domain 51B 
TAF5                  0.182   TBP-associated factor 5 
SMU1                  0.180   smu-1 suppressor of mec-8 and unc-52 homolog 
PLRG1                 0.171   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
SPAG16                0.170   sperm associated antigen 16 isoform 1 
WDR51A                0.167   WD repeat domain 51A isoform 2 
WDR51A                0.167   WD repeat domain 51A isoform 1 
PRPF4                 0.165   PRP4 pre-mRNA processing factor 4 homolog 
WDR38                 0.164   WD repeat domain 38 
CDC40                 0.161   cell division cycle 40 homolog 
NLE1                  0.161   Notchless gene homolog isoform a 
TBL1XR1               0.153   transducin (beta)-like 1 X-linked receptor 1 
FBXW11                0.152   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.152   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.152   F-box and WD repeat domain containing 11 isoform B [...
WDR88                 0.149   PQQ repeat and WD repeat domain containing 
GNB2L1                0.147   guanine nucleotide binding protein (G protein), beta ...
APAF1                 0.147   apoptotic peptidase activating factor 1 isoform c [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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