Guide to the Human Genome
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Name: WDR3 Sequence: fasta or formatted (943aa) NCBI GI: 5803221
Description:

WD repeat-containing protein 3

Referenced in:

Nucleus and Nucleolus
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         55           3
 C cysteine            2.0         19           1
 D aspartate           6.4         60           2
 E glutamate           8.0         75           3
 F phenylalanine       3.9         37           2
 G glycine             6.4         60           2
 H histidine           2.7         25           2
 I isoleucine          6.4         60           2
 K lysine              8.4         79           2
 L leucine            10.9        103           2
 M methionine          1.9         18           1
 N asparagine          2.2         21           2
 P proline             3.2         30           1
 Q glutamine           3.4         32           1
 R arginine            4.8         45           1
 S serine              7.8         74           3
 T threonine           5.4         51           2
 V valine              6.8         64           2
 W tryptophan          1.4         13           2
 Y tyrosine            2.3         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat-containing protein 3 
WDR69                 0.046   WD repeat domain 69 
TBL3                  0.044   transducin beta-like 3 
WDR61                 0.043   WD repeat domain 61 
APAF1                 0.042   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.042   apoptotic peptidase activating factor 1 isoform b [Ho...
FBXW11                0.040   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.040   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.040   F-box and WD repeat domain containing 11 isoform B [...
WDR5B                 0.039   WD repeat domain 5B 
BTRC                  0.038   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.038   beta-transducin repeat containing protein isoform 1 ...
APAF1                 0.038   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.038   apoptotic peptidase activating factor 1 isoform a [Ho...
KATNB1                0.037   katanin p80 subunit B 1 
WDR51A                0.037   WD repeat domain 51A isoform 2 
WDR51A                0.037   WD repeat domain 51A isoform 1 
WDR38                 0.037   WD repeat domain 38 
FBXW7                 0.036   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.036   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.036   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR5                  0.036   WD repeat domain 5 
WDR5                  0.036   WD repeat domain 5 
WDR51A                0.035   WD repeat domain 51A isoform 3 
WDR88                 0.034   PQQ repeat and WD repeat domain containing 
PAFAH1B1              0.033   platelet-activating factor acetylhydrolase, isoform I...
PLRG1                 0.033   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
GNB3                  0.033   guanine nucleotide-binding protein, beta-3 subunit [H...
CIAO1                 0.033   WD repeat domain 39 
TAF5L                 0.032   PCAF associated factor 65 beta isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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