Guide to the Human Genome
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Name: GNB2 Sequence: fasta or formatted (340aa) NCBI GI: 20357529
Description:

guanine nucleotide-binding protein, beta-2 subunit

Referenced in:

G Proteins
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         28           1
 C cysteine            3.8         13           2
 D aspartate           8.8         30           2
 E glutamate           2.6          9           1
 F phenylalanine       3.5         12           2
 G glycine             9.1         31           2
 H histidine           2.4          8           1
 I isoleucine          5.9         20           2
 K lysine              2.4          8           1
 L leucine             8.8         30           3
 M methionine          2.6          9           1
 N asparagine          3.8         13           1
 P proline             1.8          6           1
 Q glutamine           3.5         12           2
 R arginine            7.1         24           2
 S serine              8.8         30           2
 T threonine           7.1         24           2
 V valine              5.0         17           1
 W tryptophan          2.4          8           1
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide-binding protein, beta-2 subunit [... 
GNB1                  0.920   guanine nucleotide-binding protein, beta-1 subunit [...
GNB4                  0.919   guanine nucleotide-binding protein, beta-4 subunit [...
GNB3                  0.839   guanine nucleotide-binding protein, beta-3 subunit [H...
GNB5                  0.508   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.508   guanine nucleotide-binding protein, beta-5 subunit i...
WDR69                 0.139   WD repeat domain 69 
PRPF4                 0.139   PRP4 pre-mRNA processing factor 4 homolog 
TAF5                  0.129   TBP-associated factor 5 
WDR5                  0.126   WD repeat domain 5 
WDR5                  0.126   WD repeat domain 5 
WDR5B                 0.124   WD repeat domain 5B 
WDR38                 0.124   WD repeat domain 38 
WDR51A                0.123   WD repeat domain 51A isoform 2 
WDR51A                0.123   WD repeat domain 51A isoform 1 
TAF5L                 0.117   PCAF associated factor 65 beta isoform a 
NLE1                  0.114   Notchless gene homolog isoform a 
WDR51B                0.114   WD repeat domain 51B 
WDR61                 0.111   WD repeat domain 61 
SPAG16                0.109   sperm associated antigen 16 isoform 1 
FBXW7                 0.106   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.106   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.106   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR51A                0.106   WD repeat domain 51A isoform 3 
TBL1Y                 0.105   transducin beta-like 1Y 
TBL1Y                 0.105   transducin beta-like 1Y 
TBL1Y                 0.105   transducin beta-like 1Y 
TBL1XR1               0.103   transducin (beta)-like 1 X-linked receptor 1 
TBL1X                 0.103   transducin beta-like 1X isoform b 
TBL1X                 0.103   transducin beta-like 1X isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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