Guide to the Human Genome
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Name: TAF5 Sequence: fasta or formatted (800aa) NCBI GI: 21071067
Description:

TBP-associated factor 5

Referenced in:

RNA Polymerase and General Transcription Factors
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         71           3
 C cysteine            1.1          9           1
 D aspartate           6.6         53           2
 E glutamate           6.5         52           2
 F phenylalanine       3.5         28           2
 G glycine             9.0         72           4
 H histidine           2.8         22           1
 I isoleucine          2.9         23           1
 K lysine              5.5         44           4
 L leucine             9.5         76           3
 M methionine          1.6         13           1
 N asparagine          3.6         29           2
 P proline             6.0         48           2
 Q glutamine           3.5         28           2
 R arginine            4.5         36           2
 S serine              8.0         64           3
 T threonine           5.9         47           2
 V valine              6.5         52           2
 W tryptophan          1.0          8           1
 Y tyrosine            3.1         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBP-associated factor 5 
TAF5L                 0.218   PCAF associated factor 65 beta isoform a 
WDR5                  0.076   WD repeat domain 5 
WDR5                  0.076   WD repeat domain 5 
WDR5B                 0.075   WD repeat domain 5B 
WDR38                 0.070   WD repeat domain 38 
KATNB1                0.070   katanin p80 subunit B 1 
WDR51B                0.070   WD repeat domain 51B 
WDR69                 0.069   WD repeat domain 69 
WDR51A                0.063   WD repeat domain 51A isoform 3 
WDR51A                0.063   WD repeat domain 51A isoform 2 
WDR51A                0.063   WD repeat domain 51A isoform 1 
TBL1XR1               0.061   transducin (beta)-like 1 X-linked receptor 1 
FBXW7                 0.058   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.058   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.058   F-box and WD repeat domain containing 7 isoform 2 [H...
GNB5                  0.058   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.058   guanine nucleotide-binding protein, beta-5 subunit i...
TBL1Y                 0.057   transducin beta-like 1Y 
TBL1Y                 0.057   transducin beta-like 1Y 
TBL1Y                 0.057   transducin beta-like 1Y 
SPAG16                0.056   sperm associated antigen 16 isoform 1 
PAFAH1B1              0.056   platelet-activating factor acetylhydrolase, isoform I...
GNB1                  0.056   guanine nucleotide-binding protein, beta-1 subunit [...
TBL1X                 0.055   transducin beta-like 1X isoform b 
TBL1X                 0.055   transducin beta-like 1X isoform b 
TBL1X                 0.055   transducin beta-like 1X isoform a 
TBL1X                 0.055   transducin beta-like 1X isoform a 
GNB2                  0.055   guanine nucleotide-binding protein, beta-2 subunit [...
PRPF4                 0.055   PRP4 pre-mRNA processing factor 4 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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