Guide to the Human Genome
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Name: GNB4 Sequence: fasta or formatted (340aa) NCBI GI: 11055998
Description:

guanine nucleotide-binding protein, beta-4 subunit

Referenced in:

G Proteins
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         26           1
 C cysteine            3.8         13           2
 D aspartate           8.8         30           2
 E glutamate           2.4          8           1
 F phenylalanine       3.2         11           2
 G glycine             7.9         27           2
 H histidine           2.4          8           1
 I isoleucine          5.0         17           2
 K lysine              2.4          8           1
 L leucine             9.1         31           3
 M methionine          2.9         10           1
 N asparagine          4.4         15           1
 P proline             1.5          5           1
 Q glutamine           3.8         13           2
 R arginine            6.8         23           2
 S serine             10.0         34           2
 T threonine           7.4         25           3
 V valine              5.3         18           1
 W tryptophan          2.4          8           1
 Y tyrosine            2.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide-binding protein, beta-4 subunit [... 
GNB1                  0.922   guanine nucleotide-binding protein, beta-1 subunit [...
GNB2                  0.919   guanine nucleotide-binding protein, beta-2 subunit [...
GNB3                  0.832   guanine nucleotide-binding protein, beta-3 subunit [H...
GNB5                  0.513   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.513   guanine nucleotide-binding protein, beta-5 subunit i...
WDR69                 0.143   WD repeat domain 69 
PRPF4                 0.142   PRP4 pre-mRNA processing factor 4 homolog 
WDR5B                 0.130   WD repeat domain 5B 
WDR5                  0.127   WD repeat domain 5 
WDR5                  0.127   WD repeat domain 5 
WDR38                 0.127   WD repeat domain 38 
TAF5L                 0.127   PCAF associated factor 65 beta isoform a 
TAF5                  0.121   TBP-associated factor 5 
NLE1                  0.121   Notchless gene homolog isoform a 
WDR51A                0.117   WD repeat domain 51A isoform 2 
WDR51A                0.117   WD repeat domain 51A isoform 1 
WDR51B                0.114   WD repeat domain 51B 
WDR61                 0.111   WD repeat domain 61 
FBXW7                 0.109   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.109   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.109   F-box and WD repeat domain containing 7 isoform 2 [H...
SPAG16                0.109   sperm associated antigen 16 isoform 1 
GNB2L1                0.105   guanine nucleotide binding protein (G protein), beta ...
WDR51A                0.102   WD repeat domain 51A isoform 3 
TBL1Y                 0.102   transducin beta-like 1Y 
TBL1Y                 0.102   transducin beta-like 1Y 
TBL1Y                 0.102   transducin beta-like 1Y 
PWP2                  0.100   PWP2 periodic tryptophan protein homolog 
KATNB1                0.100   katanin p80 subunit B 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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