Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PARD3B Sequence: fasta or formatted (1104aa) NCBI GI: 119120907
Description:

par-3 partitioning defective 3 homolog B isoform a

Referenced in:

Gene Structure
G Proteins
Gap Junctions and Tight Junctions
PDZ Domain

Other entries for this name:
alt prot [1143aa] par-3 partitioning defective 3 homolog B isoform b
alt prot [1136aa] par-3 partitioning defective 3 homolog B isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         62           2
 C cysteine            1.0         11           2
 D aspartate           5.5         61           2
 E glutamate           8.1         89           3
 F phenylalanine       2.7         30           2
 G glycine             9.5        105           2
 H histidine           2.4         27           2
 I isoleucine          3.6         40           2
 K lysine              7.9         87           3
 L leucine             8.8         97           3
 M methionine          1.8         20           1
 N asparagine          3.5         39           2
 P proline             8.7         96           4
 Q glutamine           4.3         47           2
 R arginine            6.6         73           2
 S serine              8.0         88           3
 T threonine           4.3         48           2
 V valine              5.3         59           2
 W tryptophan          0.3          3           1
 Y tyrosine            2.0         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   par-3 partitioning defective 3 homolog B isoform a ... 
PARD3B                0.732   par-3 partitioning defective 3 homolog B isoform b ...
PARD3B                0.695   par-3 partitioning defective 3 homolog B isoform c ...
PARD3                 0.232   partitioning-defective protein 3 homolog 
MPDZ                  0.037   multiple PDZ domain protein 
INADL                 0.037   InaD-like 
SCRIB                 0.030   scribble isoform b 
SCRIB                 0.030   scribble isoform a 
DLG3                  0.028   synapse-associated protein 102 isoform a 
LNX2                  0.027   ligand of numb-protein X 2 
DLG1                  0.026   discs, large homolog 1 isoform 2 
PTPN13                0.026   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.026   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.026   protein tyrosine phosphatase, non-receptor type 13 is...
DLG1                  0.026   discs, large homolog 1 isoform 1 
DLG4                  0.026   post-synaptic density protein 95 isoform 1 
DLG4                  0.026   post-synaptic density protein 95 isoform 2 
IL16                  0.026   interleukin 16 isoform 2 
DLG2                  0.025   chapsyn-110 isoform 3 
DLG2                  0.025   chapsyn-110 isoform 1 
DLG2                  0.025   chapsyn-110 isoform 2 
PTPN13                0.025   protein tyrosine phosphatase, non-receptor type 13 i...
LNX1                  0.025   ligand of numb-protein X 1 isoform a 
LNX1                  0.025   ligand of numb-protein X 1 isoform b 
PDZD2                 0.023   PDZ domain containing 2 
MAGI3                 0.022   membrane-associated guanylate kinase-related  3 iso...
IL16                  0.021   interleukin 16 isoform 1 precursor 
FRMPD2                0.021   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.021   FERM and PDZ domain containing 2 isoform 3 
MAGI3                 0.020   membrane-associated guanylate kinase-related  3 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press