Guide to the Human Genome
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Name: HS3ST3B1 Sequence: fasta or formatted (390aa) NCBI GI: 5174467
Description:

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         31           3
 C cysteine            1.5          6           1
 D aspartate           5.1         20           1
 E glutamate           4.4         17           2
 F phenylalanine       5.4         21           2
 G glycine             7.9         31           2
 H histidine           2.6         10           1
 I isoleucine          4.6         18           3
 K lysine              5.4         21           2
 L leucine            10.0         39           4
 M methionine          2.3          9           1
 N asparagine          0.8          3           1
 P proline            10.0         39           7
 Q glutamine           2.8         11           1
 R arginine            8.2         32           2
 S serine              7.4         29           2
 T threonine           5.4         21           1
 V valine              4.4         17           3
 W tryptophan          1.3          5           1
 Y tyrosine            2.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 
HS3ST3A1              0.667   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST4                0.541   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
HS3ST6                0.528   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
HS3ST2                0.526   heparan sulfate D-glucosaminyl  3-O-sulfotransferase ...
HS3ST5                0.281   heparan sulfate (glucosamine) 3-O-sulfotransferase 5...
HS3ST1                0.258   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...
NDST3                 0.132   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
NDST4                 0.127   heparan sulfate N-deacetylase/N-sulfotransferase 4 [...
NDST2                 0.125   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
NDST1                 0.122   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
CHST15                0.035   B cell RAG associated protein 
CNGB1                 0.022   cyclic nucleotide gated channel beta 1 isoform a [H...
RNF215                0.019   ring finger protein 215 
PRR12                 0.019   proline rich 12 
ZNF628                0.018   zinc finger protein 628 
SAMD1                 0.018   sterile alpha motif domain containing 1 
JSRP1                 0.018   junctional sarcoplasmic reticulum protein 1 
WAS                   0.015   Wiskott-Aldrich syndrome protein 
CASKIN1               0.015   CASK interacting protein 1 
WIPF3                 0.015   WAS/WASL interacting protein family, member 3 [Homo...
HCN2                  0.014   hyperpolarization activated cyclic nucleotide-gated...
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
SON                   0.014   SON DNA-binding protein isoform F 
SON                   0.014   SON DNA-binding protein isoform B 
FMN1                  0.013   formin 1 
MCL1                  0.013   myeloid cell leukemia sequence 1 isoform 1 
MCL1                  0.013   myeloid cell leukemia sequence 1 isoform 2 
ATG9B                 0.013   ATG9 autophagy related 9 homolog B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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