Guide to the Human Genome
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Name: HS3ST2 Sequence: fasta or formatted (367aa) NCBI GI: 5174463
Description:

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         20           3
 C cysteine            2.5          9           3
 D aspartate           4.4         16           2
 E glutamate           4.1         15           1
 F phenylalanine       5.4         20           2
 G glycine             7.6         28           2
 H histidine           1.9          7           1
 I isoleucine          4.4         16           1
 K lysine              5.2         19           2
 L leucine            10.6         39           2
 M methionine          1.4          5           1
 N asparagine          2.2          8           1
 P proline             8.2         30           2
 Q glutamine           3.5         13           1
 R arginine            9.8         36           2
 S serine              7.4         27           2
 T threonine           6.0         22           1
 V valine              5.4         20           3
 W tryptophan          1.1          4           1
 Y tyrosine            3.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate D-glucosaminyl  3-O-sulfotransferase ... 
HS3ST4                0.576   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
HS3ST3B1              0.560   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST3A1              0.540   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST6                0.518   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
HS3ST5                0.302   heparan sulfate (glucosamine) 3-O-sulfotransferase 5...
HS3ST1                0.285   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...
NDST3                 0.142   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
NDST2                 0.141   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
NDST4                 0.140   heparan sulfate N-deacetylase/N-sulfotransferase 4 [...
NDST1                 0.126   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
CHST15                0.022   B cell RAG associated protein 
ASCL2                 0.014   achaete-scute complex homolog-like 2 
HCN2                  0.014   hyperpolarization activated cyclic nucleotide-gated...
ABCA2                 0.014   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.014   ATP-binding cassette, sub-family A, member 2 isoform...
SEMA6C                0.014   semaphorin Y 
LOC100292339          0.012   PREDICTED: hypothetical protein 
LOC100288937          0.012   PREDICTED: hypothetical protein XP_002343343 
ATP11B                0.012   ATPase, class VI, type 11B 
LOC390595             0.011   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.011   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.011   PREDICTED: hypothetical protein 
SMARCA2               0.011   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.011   SWI/SNF-related matrix-associated actin-dependent re...
PAWR                  0.011   PRKC, apoptosis, WT1, regulator 
ATXN2                 0.011   ataxin 2 
TNRC18                0.011   trinucleotide repeat containing 18 
C9orf140              0.011   tumor specificity and mitosis phase-dependent expre...
ZIC5                  0.011   zinc finger protein of the cerebellum 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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