Guide to the Human Genome
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Name: HS3ST6 Sequence: fasta or formatted (311aa) NCBI GI: 116089312
Description:

heparan sulfate (glucosamine) 3-O-sulfotransferase 6

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         28           2
 C cysteine            1.9          6           1
 D aspartate           3.5         11           1
 E glutamate           2.9          9           1
 F phenylalanine       5.8         18           2
 G glycine             9.0         28           2
 H histidine           3.2         10           1
 I isoleucine          1.9          6           1
 K lysine              3.9         12           2
 L leucine            10.9         34           2
 M methionine          1.6          5           1
 N asparagine          1.0          3           1
 P proline            10.0         31           2
 Q glutamine           3.2         10           1
 R arginine           10.9         34           3
 S serine              5.8         18           3
 T threonine           4.2         13           1
 V valine              6.8         21           3
 W tryptophan          1.3          4           1
 Y tyrosine            3.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate (glucosamine) 3-O-sulfotransferase ... 
HS3ST3B1              0.661   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST3A1              0.648   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST2                0.609   heparan sulfate D-glucosaminyl  3-O-sulfotransferase ...
HS3ST4                0.606   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
HS3ST5                0.333   heparan sulfate (glucosamine) 3-O-sulfotransferase 5...
HS3ST1                0.326   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...
NDST3                 0.159   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
NDST4                 0.151   heparan sulfate N-deacetylase/N-sulfotransferase 4 [...
NDST2                 0.150   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
NDST1                 0.148   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
CHST15                0.047   B cell RAG associated protein 
SULT2B1               0.024   sulfotransferase family, cytosolic, 2B, member 1 iso...
SULT2B1               0.024   sulfotransferase family, cytosolic, 2B, member 1 iso...
LOC100293124          0.023   PREDICTED: similar to patatin-like phospholipase do...
FGF2                  0.018   fibroblast growth factor 2 
SHC2                  0.018   SHC (Src homology 2 domain containing) transforming...
JSRP1                 0.018   junctional sarcoplasmic reticulum protein 1 
C22orf26              0.018   hypothetical protein LOC55267 
EIF3F                 0.016   eukaryotic translation initiation factor 3, subunit 5...
RANBP9                0.016   RAN binding protein 9 
PNPLA2                0.016   patatin-like phospholipase domain containing 2 [Homo...
SMARCD2               0.016   SWI/SNF-related matrix-associated actin-dependent r...
LOC441086             0.014   PREDICTED: hypothetical protein 
LOC100131102          0.014   PREDICTED: hypothetical protein 
LOC100131102          0.014   PREDICTED: hypothetical protein 
CHST2                 0.014   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
SALL3                 0.014   sal-like 3 
WDR81                 0.013   PREDICTED: WD repeat domain 81 
LOC728931             0.013   PREDICTED: similar to hCG17429 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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