Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FMN1 Sequence: fasta or formatted (1196aa) NCBI GI: 157168329
Description:

formin 1

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         70           2
 C cysteine            1.1         13           1
 D aspartate           5.3         63           3
 E glutamate          10.0        120           3
 F phenylalanine       3.1         37           2
 G glycine             5.7         68           2
 H histidine           1.5         18           1
 I isoleucine          3.7         44           2
 K lysine              9.0        108           3
 L leucine             9.2        110           3
 M methionine          1.6         19           1
 N asparagine          3.3         39           1
 P proline            10.1        121           9
 Q glutamine           4.8         58           2
 R arginine            4.2         50           2
 S serine              9.4        113           4
 T threonine           5.4         64           2
 V valine              4.7         56           3
 W tryptophan          0.5          6           1
 Y tyrosine            1.6         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   formin 1 
FMN2                  0.225   formin 2 
DIAPH1                0.086   diaphanous 1 isoform 2 
DIAPH1                0.086   diaphanous 1 isoform 1 
DIAPH3                0.074   diaphanous homolog 3 isoform b 
DIAPH3                0.074   diaphanous homolog 3 isoform a 
DAAM1                 0.070   dishevelled-associated activator of morphogenesis 1 ...
FMNL1                 0.069   formin-like 1 
DIAPH2                0.068   diaphanous 2 isoform 12C 
DIAPH2                0.068   diaphanous 2 isoform 156 
DAAM2                 0.067   dishevelled associated activator of morphogenesis 2 ...
FMNL2                 0.065   formin-like 2 
INF2                  0.060   inverted formin 2 isoform 2 
INF2                  0.060   inverted formin 2 isoform 1 
FHDC1                 0.053   FH2 domain containing 1 
FMNL3                 0.048   formin-like 3 isoform 2 
FMNL3                 0.048   formin-like 3 isoform 1 
GRID2IP               0.043   glutamate receptor, ionotropic, delta 2 (Grid2) int...
FHOD3                 0.040   formin homology 2 domain containing 3 
FHOD1                 0.037   formin homology 2 domain containing 1 
WASF2                 0.034   WAS protein family, member 2 
WASL                  0.032   Wiskott-Aldrich syndrome gene-like protein 
CPSF6                 0.030   cleavage and polyadenylation specific factor 6, 68 ...
PRR12                 0.029   proline rich 12 
WAS                   0.028   Wiskott-Aldrich syndrome protein 
SETD1B                0.027   SET domain containing 1B 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
ESX1                  0.026   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
WBP11                 0.026   WW domain binding protein 11 
CCNK                  0.026   cyclin K isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press